Wall clock time and date at job start Tue Mar 31 2020 06:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35689 * 117.00111 * 2 1 4 4 C 1.38776 * 119.63253 * 180.02562 * 3 2 1 5 5 C 1.39441 * 118.97553 * 180.02562 * 4 3 2 6 6 C 1.48497 * 120.87496 * 180.02562 * 5 4 3 7 7 N 1.30722 * 126.40500 * 0.02562 * 6 5 4 8 8 O 1.21293 * 110.10222 * 179.97438 * 7 6 5 9 9 C 1.33662 * 110.02041 * 0.02562 * 8 7 6 10 10 C 1.50707 * 126.44389 * 180.02562 * 9 8 7 11 11 S 1.80990 * 109.47089 * 269.97739 * 10 9 8 12 12 C 1.76202 * 99.99876 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00064 * 359.97438 * 12 11 10 14 14 C 1.38805 * 119.99842 * 180.02562 * 12 11 10 15 15 N 1.31635 * 119.99648 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00392 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46894 * 90.00297 * 16 14 12 18 18 H 1.48492 * 109.47333 * 210.00643 * 16 14 12 19 19 H 1.48507 * 109.46991 * 330.00740 * 16 14 12 20 20 N 1.30981 * 107.11378 * 0.02562 * 9 8 7 21 21 C 1.39869 * 118.25523 * 0.26678 * 5 4 3 22 22 C 1.37883 * 119.15231 * 359.48452 * 21 5 4 23 23 N 1.31976 * 120.95628 * 0.53268 * 22 21 5 24 24 H 1.09003 * 109.46691 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46542 * 299.99921 * 1 2 3 26 26 H 1.08990 * 109.46852 * 59.99825 * 1 2 3 27 27 H 1.08000 * 120.50997 * 0.02562 * 4 3 2 28 28 H 1.08999 * 109.46884 * 29.97556 * 10 9 8 29 29 H 1.08997 * 109.46914 * 149.97004 * 10 9 8 30 30 H 0.96998 * 119.99969 * 179.97438 * 15 14 12 31 31 H 1.08001 * 120.41822 * 179.72586 * 21 5 4 32 32 H 1.08000 * 119.51850 * 180.24272 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4314 1.2727 -0.0005 5 6 4.0502 2.5223 0.0000 6 6 5.5305 2.6396 -0.0011 7 7 6.3870 1.6521 -0.0031 8 8 7.5206 2.0835 -0.0040 9 6 7.5016 3.4199 -0.0021 10 6 8.7012 4.3323 -0.0030 11 16 9.1840 4.6957 1.7031 12 6 10.5664 5.7488 1.4121 13 1 10.8663 5.9791 0.4005 14 6 11.2706 6.2815 2.4831 15 7 12.3030 7.0687 2.2657 16 14 10.7523 5.8827 4.2329 17 1 11.4627 4.6627 4.6935 18 1 11.0955 7.0210 5.1225 19 1 9.2866 5.6471 4.2735 20 7 6.2445 3.7876 0.0007 21 6 3.2399 3.6624 0.0068 22 6 1.8693 3.5124 0.0019 23 7 1.3176 2.3135 0.0014 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8899 27 1 4.0218 0.3684 -0.0014 28 1 9.5283 3.8444 -0.5186 29 1 8.4508 5.2611 -0.5155 30 1 12.7949 7.4413 3.0141 31 1 3.6823 4.6476 0.0119 32 1 1.2381 4.3887 0.0031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114058362.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:10 Heat of formation + Delta-G solvation = 69.091373 kcal Electronic energy + Delta-G solvation = -19411.769582 eV Core-core repulsion = 16081.844508 eV Total energy + Delta-G solvation = -3329.925074 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.51858 -40.87581 -38.26835 -35.97954 -34.03606 -32.60853 -32.05843 -31.06797 -28.76600 -27.59928 -25.81235 -25.24192 -24.03083 -22.79456 -21.46472 -18.85327 -18.14557 -17.84367 -17.48239 -16.68917 -16.30369 -16.17150 -15.28804 -15.15486 -14.62728 -14.52249 -14.27235 -13.99378 -13.84316 -13.24628 -12.96820 -12.57332 -12.24490 -12.20219 -12.01937 -11.64853 -11.46071 -11.23092 -11.14428 -11.02040 -10.38255 -10.06292 -9.99593 -9.45056 -9.17213 -8.85174 -8.82982 -7.21009 -6.44113 -4.21729 0.35668 0.87258 1.21549 2.29588 2.65602 2.74020 2.93140 3.20211 3.33973 3.35483 3.41026 3.52856 3.85759 4.00941 4.16443 4.51386 4.68605 4.74704 4.92126 4.93971 4.95733 4.98128 5.00740 5.28591 5.36131 5.37536 5.51472 5.65399 5.88809 5.93650 6.00106 6.05172 6.89092 7.49200 7.78629 8.11722 8.27866 8.99560 10.64601 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.033720 B = 0.002953 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.166202 B = 9479.363293 C = 9662.528499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.306 6.306 3 C 0.321 3.679 4 C -0.159 4.159 5 C 0.070 3.930 6 C 0.197 3.803 7 N -0.369 5.369 8 O 0.092 5.908 9 C 0.229 3.771 10 C -0.014 4.014 11 S -0.162 6.162 12 C -0.513 4.513 13 H 0.097 0.903 14 C 0.099 3.901 15 N -0.872 5.872 16 Si 0.856 3.144 17 H -0.265 1.265 18 H -0.271 1.271 19 H -0.238 1.238 20 N -0.464 5.464 21 C -0.167 4.167 22 C 0.141 3.859 23 N -0.533 5.533 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.149 0.851 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.274 0.726 31 H 0.154 0.846 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.788 -9.579 -5.297 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.213 6.213 3 C 0.142 3.858 4 C -0.181 4.181 5 C 0.061 3.939 6 C -0.073 4.073 7 N -0.075 5.075 8 O 0.029 5.971 9 C 0.009 3.991 10 C -0.163 4.163 11 S 0.063 5.937 12 C -0.661 4.661 13 H 0.115 0.885 14 C -0.111 4.111 15 N -0.507 5.507 16 Si 0.680 3.320 17 H -0.190 1.190 18 H -0.196 1.196 19 H -0.162 1.162 20 N -0.198 5.198 21 C -0.189 4.189 22 C -0.014 4.014 23 N -0.257 5.257 24 H 0.115 0.885 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.167 0.833 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -21.449 -10.719 -4.262 24.354 hybrid contribution 1.434 0.653 -0.246 1.595 sum -20.015 -10.067 -4.507 22.853 Atomic orbital electron populations 1.22879 0.76991 1.03039 1.02549 1.86252 1.23060 1.24168 1.87851 1.19510 0.88684 0.84898 0.92695 1.20976 0.92361 0.98574 1.06235 1.17303 0.86138 0.93330 0.97146 1.23559 0.95810 0.84693 1.03258 1.74859 0.90015 1.22577 1.20019 1.85313 1.23712 1.22978 1.65131 1.28223 0.95085 0.82501 0.93326 1.21769 0.91574 0.98088 1.04857 1.84692 1.41788 1.65279 1.01967 1.22066 1.12886 1.33082 0.98020 0.88536 1.24697 0.93734 0.93417 0.99271 1.69913 1.17943 1.30217 1.32676 0.86766 0.81791 0.79218 0.84207 1.19040 1.19613 1.16173 1.72020 1.01061 1.26124 1.20619 1.22131 0.94242 0.99723 1.02810 1.22382 0.92333 0.93631 0.93099 1.67257 1.41113 0.98890 1.18487 0.88536 0.92181 0.92200 0.83279 0.86923 0.86115 0.91623 0.82865 0.81381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.41 10.47 -18.77 -0.20 -3.60 16 3 C 0.32 3.90 7.49 -17.17 -0.13 3.77 16 4 C -0.16 -2.03 9.72 -38.93 -0.38 -2.41 16 5 C 0.07 0.95 5.91 -104.61 -0.62 0.34 16 6 C 0.20 3.14 7.83 -156.14 -1.22 1.91 16 7 N -0.37 -6.07 11.94 30.96 0.37 -5.70 16 8 O 0.09 1.52 11.29 18.06 0.20 1.72 16 9 C 0.23 3.86 7.75 -12.99 -0.10 3.75 16 10 C -0.01 -0.25 6.30 36.01 0.23 -0.02 16 11 S -0.16 -3.65 19.39 -107.50 -2.08 -5.74 16 12 C -0.51 -13.58 10.04 30.94 0.31 -13.27 16 13 H 0.10 2.66 8.03 -52.49 -0.42 2.24 16 14 C 0.10 2.70 5.50 -17.43 -0.10 2.60 16 15 N -0.87 -24.87 13.97 55.49 0.78 -24.09 16 16 Si 0.86 20.27 27.74 -169.99 -4.72 15.55 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.24 -5.55 6.74 56.52 0.38 -5.17 16 20 N -0.46 -7.85 11.35 -9.89 -0.11 -7.96 16 21 C -0.17 -1.91 9.79 -39.10 -0.38 -2.30 16 22 C 0.14 1.38 11.16 -17.62 -0.20 1.19 16 23 N -0.53 -6.06 9.19 -13.40 -0.12 -6.18 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 26 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 27 H 0.15 1.85 7.95 -52.49 -0.42 1.44 16 28 H 0.11 1.75 8.14 -51.92 -0.42 1.33 16 29 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.15 1.65 7.96 -52.49 -0.42 1.24 16 32 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 309.13 15.07 4.66 4.66 Total: -1.00 -30.11 309.13 -5.71 -35.81 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -2.94 Total: -1.38 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.54 Total: -3.08 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.91 Total: -43.94 kcal Atomic # 8 Polarization: -1.89 SS G_CDS: 0.01 Total: -1.88 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.72 Total: 15.55 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -2.08 Total: -5.74 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.11 -5.71 -35.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114058362.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.904 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds