Wall clock time and date at job start Tue Mar 31 2020 06:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35689 * 117.00111 * 2 1 4 4 C 1.38776 * 119.63253 * 180.02562 * 3 2 1 5 5 C 1.39441 * 118.97553 * 180.02562 * 4 3 2 6 6 C 1.48497 * 120.87496 * 180.02562 * 5 4 3 7 7 N 1.30722 * 126.40500 * 0.02562 * 6 5 4 8 8 O 1.21293 * 110.10222 * 179.97438 * 7 6 5 9 9 C 1.33662 * 110.02041 * 0.02562 * 8 7 6 10 10 C 1.50707 * 126.44389 * 180.02562 * 9 8 7 11 11 S 1.80990 * 109.47089 * 269.97739 * 10 9 8 12 12 C 1.76202 * 99.99876 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00064 * 359.97438 * 12 11 10 14 14 C 1.38805 * 119.99842 * 180.02562 * 12 11 10 15 15 N 1.31635 * 119.99648 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00392 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46894 * 90.00297 * 16 14 12 18 18 H 1.48492 * 109.47333 * 210.00643 * 16 14 12 19 19 H 1.48507 * 109.46991 * 330.00740 * 16 14 12 20 20 N 1.30981 * 107.11378 * 0.02562 * 9 8 7 21 21 C 1.39869 * 118.25523 * 0.26678 * 5 4 3 22 22 C 1.37883 * 119.15231 * 359.48452 * 21 5 4 23 23 N 1.31976 * 120.95628 * 0.53268 * 22 21 5 24 24 H 1.09003 * 109.46691 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46542 * 299.99921 * 1 2 3 26 26 H 1.08990 * 109.46852 * 59.99825 * 1 2 3 27 27 H 1.08000 * 120.50997 * 0.02562 * 4 3 2 28 28 H 1.08999 * 109.46884 * 29.97556 * 10 9 8 29 29 H 1.08997 * 109.46914 * 149.97004 * 10 9 8 30 30 H 0.96998 * 119.99969 * 179.97438 * 15 14 12 31 31 H 1.08001 * 120.41822 * 179.72586 * 21 5 4 32 32 H 1.08000 * 119.51850 * 180.24272 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4314 1.2727 -0.0005 5 6 4.0502 2.5223 0.0000 6 6 5.5305 2.6396 -0.0011 7 7 6.3870 1.6521 -0.0031 8 8 7.5206 2.0835 -0.0040 9 6 7.5016 3.4199 -0.0021 10 6 8.7012 4.3323 -0.0030 11 16 9.1840 4.6957 1.7031 12 6 10.5664 5.7488 1.4121 13 1 10.8663 5.9791 0.4005 14 6 11.2706 6.2815 2.4831 15 7 12.3030 7.0687 2.2657 16 14 10.7523 5.8827 4.2329 17 1 11.4627 4.6627 4.6935 18 1 11.0955 7.0210 5.1225 19 1 9.2866 5.6471 4.2735 20 7 6.2445 3.7876 0.0007 21 6 3.2399 3.6624 0.0068 22 6 1.8693 3.5124 0.0019 23 7 1.3176 2.3135 0.0014 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8899 27 1 4.0218 0.3684 -0.0014 28 1 9.5283 3.8444 -0.5186 29 1 8.4508 5.2611 -0.5155 30 1 12.7949 7.4413 3.0141 31 1 3.6823 4.6476 0.0119 32 1 1.2381 4.3887 0.0031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114058362.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:10 Heat of formation + Delta-G solvation = 47.347726 kcal Electronic energy + Delta-G solvation = -19412.712457 eV Core-core repulsion = 16081.844508 eV Total energy + Delta-G solvation = -3330.867949 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.81123 -41.73998 -39.10598 -37.21457 -35.24584 -34.67821 -33.14834 -31.91994 -30.13137 -28.31177 -27.87699 -26.31117 -25.08005 -23.85094 -22.59521 -20.16697 -19.46928 -19.41652 -18.50804 -17.77430 -17.14609 -17.08533 -17.08268 -16.37931 -16.20030 -15.76809 -15.21946 -14.96540 -14.89855 -14.68263 -14.52453 -13.64260 -13.51150 -13.33259 -13.30826 -13.04406 -13.00003 -12.72732 -12.32609 -12.22589 -11.99191 -11.60871 -11.17617 -10.93670 -10.78536 -10.49802 -9.68476 -9.08559 -8.51060 -6.25949 -0.70729 -0.12012 0.01050 0.97311 1.28179 1.33169 1.44350 1.48430 1.71776 1.80483 2.22612 2.30205 2.54066 2.62139 2.70103 2.87820 3.21865 3.61496 3.80944 3.90120 4.00746 4.07265 4.28056 4.41553 4.43954 4.53035 4.53627 4.56631 4.74385 4.80216 5.05916 5.20451 5.71653 6.09357 6.15366 6.63432 6.82809 6.92301 8.60866 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.033720 B = 0.002953 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.166202 B = 9479.363293 C = 9662.528499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.319 6.319 3 C 0.316 3.684 4 C -0.168 4.168 5 C 0.048 3.952 6 C 0.200 3.800 7 N -0.378 5.378 8 O 0.089 5.911 9 C 0.226 3.774 10 C 0.001 3.999 11 S -0.177 6.177 12 C -0.519 4.519 13 H 0.073 0.927 14 C 0.048 3.952 15 N -0.912 5.912 16 Si 0.911 3.089 17 H -0.262 1.262 18 H -0.263 1.263 19 H -0.233 1.233 20 N -0.470 5.470 21 C -0.167 4.167 22 C 0.153 3.847 23 N -0.535 5.535 24 H 0.123 0.877 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.145 0.855 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.278 0.722 31 H 0.160 0.840 32 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.049 -9.971 -5.051 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.226 6.226 3 C 0.137 3.863 4 C -0.191 4.191 5 C 0.039 3.961 6 C -0.070 4.070 7 N -0.085 5.085 8 O 0.028 5.972 9 C 0.005 3.995 10 C -0.147 4.147 11 S 0.049 5.951 12 C -0.666 4.666 13 H 0.091 0.909 14 C -0.158 4.158 15 N -0.550 5.550 16 Si 0.733 3.267 17 H -0.186 1.186 18 H -0.187 1.187 19 H -0.157 1.157 20 N -0.204 5.204 21 C -0.189 4.189 22 C -0.002 4.002 23 N -0.259 5.259 24 H 0.141 0.859 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.163 0.837 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.087 0.913 31 H 0.178 0.822 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -23.715 -11.132 -4.022 26.504 hybrid contribution 1.987 0.724 -0.454 2.163 sum -21.728 -10.408 -4.477 24.504 Atomic orbital electron populations 1.23140 0.75149 1.04915 1.02697 1.86241 1.24919 1.23832 1.87609 1.19591 0.88572 0.85539 0.92555 1.20954 0.92905 0.98240 1.07006 1.17452 0.85103 0.94509 0.99013 1.23966 0.96844 0.84099 1.02096 1.74858 0.90060 1.22829 1.20747 1.85307 1.23928 1.22753 1.65231 1.28007 0.94896 0.82637 0.93931 1.21680 0.92544 0.99108 1.01405 1.84457 1.39903 1.64241 1.06526 1.22237 1.14113 1.33245 0.97048 0.90916 1.25530 0.93818 0.93422 1.03058 1.70001 1.19305 1.31672 1.34011 0.85924 0.81653 0.79286 0.79850 1.18631 1.18700 1.15654 1.72014 1.01149 1.26646 1.20579 1.22297 0.94830 0.99277 1.02463 1.23008 0.92113 0.94287 0.90826 1.67379 1.41035 0.99155 1.18363 0.85924 0.92065 0.91922 0.83728 0.84935 0.84984 0.91264 0.82216 0.77470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.38 113.37 1.18 1.64 16 2 O -0.32 -6.67 10.47 -90.08 -0.94 -7.62 16 3 C 0.32 7.25 7.49 84.76 0.63 7.88 16 4 C -0.17 -4.19 9.72 22.69 0.22 -3.97 16 5 C 0.05 1.27 5.91 -19.86 -0.12 1.15 16 6 C 0.20 6.20 7.83 137.34 1.08 7.27 16 7 N -0.38 -12.21 11.94 -59.21 -0.71 -12.92 16 8 O 0.09 2.88 11.29 74.67 0.84 3.72 16 9 C 0.23 7.34 7.75 88.36 0.68 8.02 16 10 C 0.00 0.04 6.30 71.24 0.45 0.49 16 11 S -0.18 -7.79 19.39 -56.49 -1.10 -8.89 16 12 C -0.52 -27.57 10.04 67.96 0.68 -26.89 16 13 H 0.07 4.09 8.03 -2.91 -0.02 4.06 16 14 C 0.05 2.62 5.50 84.86 0.47 3.09 16 15 N -0.91 -52.68 13.97 21.65 0.30 -52.38 16 16 Si 0.91 41.49 27.74 68.60 1.90 43.39 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 19 H -0.23 -10.32 6.74 99.48 0.67 -9.65 16 20 N -0.47 -15.29 11.35 -302.57 -3.44 -18.73 16 21 C -0.17 -3.48 9.79 22.58 0.22 -3.26 16 22 C 0.15 2.57 11.16 84.59 0.94 3.51 16 23 N -0.53 -10.93 9.19 -309.16 -2.84 -13.77 16 24 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 26 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 27 H 0.14 3.61 7.95 -2.91 -0.02 3.59 16 28 H 0.13 3.93 8.14 -2.40 -0.02 3.91 16 29 H 0.13 4.17 8.14 -2.40 -0.02 4.15 16 30 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.16 3.10 7.96 -2.91 -0.02 3.07 16 32 H 0.21 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -64.11 309.13 1.59 -62.52 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 1.12 Total: 5.73 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 6.44 Total: -1.07 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -6.68 Total: -97.80 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.10 Total: -3.89 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.90 Total: 43.39 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.10 Total: -8.89 kcal Total: -64.11 1.59 -62.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114058362.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.870 kcal (2) G-P(sol) polarization free energy of solvation -64.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds