Wall clock time and date at job start Tue Mar 31 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99811 * 2 1 4 4 H 1.48505 * 109.47151 * 270.00190 * 3 2 1 5 5 H 1.48497 * 109.47399 * 30.00006 * 3 2 1 6 6 H 1.48502 * 109.47172 * 150.00248 * 3 2 1 7 7 C 1.37874 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00027 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99881 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46952 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.46999 * 179.97438 * 10 9 7 12 12 O 1.42105 * 109.47059 * 70.94681 * 11 10 9 13 13 C 1.76200 * 103.00100 * 180.02562 * 11 10 9 14 14 C 1.38224 * 119.61901 * 89.99962 * 13 11 10 15 15 C 1.38630 * 119.16347 * 180.02562 * 14 13 11 16 16 C 1.38675 * 118.41860 * 0.25530 * 15 14 13 17 17 C 1.50699 * 120.41772 * 179.74920 * 16 15 14 18 18 F 1.39904 * 109.47095 * 89.99873 * 17 16 15 19 19 F 1.39902 * 109.47114 * 209.99712 * 17 16 15 20 20 F 1.39901 * 109.47159 * 330.00006 * 17 16 15 21 21 C 1.38180 * 119.16315 * 359.51902 * 16 15 14 22 22 N 1.31856 * 119.61944 * 270.02630 * 13 11 10 23 23 H 0.96998 * 120.00460 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47042 * 59.99784 * 9 7 2 25 25 H 1.08991 * 109.46773 * 299.99278 * 9 7 2 26 26 H 1.09000 * 109.46925 * 59.99756 * 10 9 7 27 27 H 1.08995 * 109.47000 * 299.99964 * 10 9 7 28 28 H 1.07997 * 120.41892 * 0.02562 * 14 13 11 29 29 H 1.08002 * 120.78834 * 179.97438 * 15 14 13 30 30 H 1.07999 * 119.62145 * 180.20788 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 16 5.8355 -2.6364 -0.0025 12 8 6.3102 -2.1986 1.2634 13 6 6.2320 -4.3532 -0.0029 14 6 6.3847 -5.0188 -1.2047 15 6 6.6961 -6.3696 -1.1940 16 6 6.8376 -7.0046 0.0306 17 6 7.1701 -8.4731 0.0948 18 9 8.5594 -8.6362 0.1170 19 9 6.6170 -9.0262 1.2547 20 9 6.6425 -9.1201 -1.0278 21 6 6.6746 -6.2728 1.1914 22 7 6.3790 -4.9884 1.1432 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8744 -0.6800 -0.8911 26 1 3.6579 -3.1505 -0.8907 27 1 3.6586 -3.1501 0.8892 28 1 6.2630 -4.4931 -2.1402 29 1 6.8210 -6.9155 -2.1176 30 1 6.7865 -6.7592 2.1492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123364916.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:47 Heat of formation + Delta-G solvation = -155.525021 kcal Electronic energy + Delta-G solvation = -20302.254660 eV Core-core repulsion = 16388.439997 eV Total energy + Delta-G solvation = -3913.814663 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.044 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.53941 -48.05128 -48.00281 -40.46862 -35.47777 -33.78203 -33.41341 -32.26404 -31.31139 -26.88691 -25.66651 -24.25688 -23.07399 -20.99252 -18.98140 -18.87653 -18.80564 -18.29789 -17.19273 -16.69530 -16.21024 -15.13059 -14.93471 -14.78005 -14.73023 -14.45971 -14.43176 -14.21096 -14.15268 -14.11879 -13.89141 -13.69654 -13.54165 -12.70693 -12.35073 -12.15721 -11.64810 -11.12670 -10.84543 -10.52853 -10.33546 -10.24908 -9.93182 -9.85583 -9.51444 -9.35282 -8.63325 -8.18797 -6.12949 -4.13242 0.09802 0.79108 1.82153 2.22788 2.70360 3.21468 3.24631 3.29576 3.34253 3.37729 3.59069 3.86439 4.01872 4.25661 4.37476 4.38113 4.66692 4.70609 5.17916 5.19580 5.32230 5.42443 5.77545 5.85522 5.98466 6.47908 6.95943 7.09214 7.41217 7.62392 8.42455 8.89991 9.47171 11.00004 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.033464 B = 0.003322 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.510638 B = 8426.298336 C = 8742.972935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.874 3.126 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.519 4.519 8 H 0.074 0.926 9 C 0.003 3.997 10 C -0.412 4.412 11 S 1.317 4.683 12 O -0.825 6.825 13 C -0.195 4.195 14 C -0.112 4.112 15 C -0.037 4.037 16 C -0.222 4.222 17 C 0.515 3.485 18 F -0.174 7.174 19 F -0.173 7.173 20 F -0.174 7.174 21 C 0.136 3.864 22 N -0.419 5.419 23 H 0.265 0.735 24 H 0.023 0.977 25 H 0.025 0.975 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.165 0.835 29 H 0.153 0.847 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.792 -14.654 -6.962 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.558 4.558 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.551 4.551 11 S 1.512 4.488 12 O -0.820 6.820 13 C -0.423 4.423 14 C -0.133 4.133 15 C -0.064 4.064 16 C -0.226 4.226 17 C 0.460 3.540 18 F -0.155 7.155 19 F -0.154 7.154 20 F -0.156 7.156 21 C -0.025 4.025 22 N -0.127 5.127 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.130 0.870 27 H 0.105 0.895 28 H 0.182 0.818 29 H 0.171 0.829 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 17.218 -13.382 -6.146 22.656 hybrid contribution -0.445 -1.233 0.993 1.644 sum 16.774 -14.614 -5.153 22.836 Atomic orbital electron populations 1.69894 1.06304 1.27126 1.50435 1.25015 0.94782 0.99191 0.94331 0.86859 0.80675 0.83623 0.78805 1.19752 1.21081 1.18740 1.20979 0.88520 0.94682 1.51652 0.90819 1.19274 0.98542 0.88604 0.97140 1.27527 1.13773 1.06323 1.07516 1.69836 0.90548 0.78604 1.09796 1.93149 1.74254 1.70865 1.43776 1.31436 0.99467 1.19906 0.91520 1.22010 0.97653 0.94007 0.99586 1.21524 0.92690 0.95188 0.97018 1.21199 1.10188 0.93144 0.98073 1.18100 0.74656 0.87356 0.73871 1.93242 1.29857 1.96305 1.96138 1.93217 1.85375 1.87282 1.49576 1.93206 1.86367 1.83608 1.52398 1.22975 0.91570 0.90568 0.97374 1.68407 1.08123 1.07891 1.28296 0.92512 0.95854 0.95682 0.86984 0.89486 0.81797 0.82938 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 20.89 27.47 -169.99 -4.67 16.23 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.52 -14.36 9.66 -34.44 -0.33 -14.69 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.78 16 9 C 0.00 0.08 4.05 -27.88 -0.11 -0.03 16 10 C -0.41 -7.36 5.82 37.16 0.22 -7.15 16 11 S 1.32 18.65 13.58 -107.50 -1.46 17.19 16 12 O -0.83 -17.10 17.59 -35.23 -0.62 -17.72 16 13 C -0.20 -2.59 6.48 -17.55 -0.11 -2.70 16 14 C -0.11 -1.00 9.80 -39.44 -0.39 -1.39 16 15 C -0.04 -0.32 9.52 -39.27 -0.37 -0.70 16 16 C -0.22 -2.33 5.46 -104.48 -0.57 -2.90 16 17 C 0.52 4.97 3.38 36.01 0.12 5.09 16 18 F -0.17 -1.71 17.30 2.25 0.04 -1.67 16 19 F -0.17 -1.78 16.49 2.25 0.04 -1.74 16 20 F -0.17 -1.64 16.53 2.25 0.04 -1.60 16 21 C 0.14 1.71 10.56 -17.55 -0.19 1.52 16 22 N -0.42 -6.59 9.96 -12.45 -0.12 -6.72 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 24 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 25 H 0.03 0.50 7.57 -51.93 -0.39 0.10 16 26 H 0.11 1.69 8.14 -51.92 -0.42 1.27 16 27 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 29 H 0.15 0.85 7.69 -52.49 -0.40 0.44 16 30 H 0.17 1.76 7.62 -52.49 -0.40 1.36 16 LS Contribution 294.57 15.07 4.44 4.44 Total: -1.00 -37.32 294.57 -5.81 -43.12 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: -2.42 Total: -4.05 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -1.84 Total: -21.08 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.65 Total: -33.12 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.62 Total: -17.72 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.11 Total: -5.01 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.23 kcal Atomic # 16 Polarization: 18.65 SS G_CDS: -1.46 Total: 17.19 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -37.32 -5.81 -43.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123364916.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.401 kcal (2) G-P(sol) polarization free energy of solvation -37.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds