Wall clock time and date at job start Tue Mar 31 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99811 * 2 1 4 4 H 1.48505 * 109.47151 * 270.00190 * 3 2 1 5 5 H 1.48497 * 109.47399 * 30.00006 * 3 2 1 6 6 H 1.48502 * 109.47172 * 150.00248 * 3 2 1 7 7 C 1.37874 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00027 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99881 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46952 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.46999 * 179.97438 * 10 9 7 12 12 O 1.42105 * 109.47059 * 70.94681 * 11 10 9 13 13 C 1.76200 * 103.00100 * 180.02562 * 11 10 9 14 14 C 1.38224 * 119.61901 * 89.99962 * 13 11 10 15 15 C 1.38630 * 119.16347 * 180.02562 * 14 13 11 16 16 C 1.38675 * 118.41860 * 0.25530 * 15 14 13 17 17 C 1.50699 * 120.41772 * 179.74920 * 16 15 14 18 18 F 1.39904 * 109.47095 * 89.99873 * 17 16 15 19 19 F 1.39902 * 109.47114 * 209.99712 * 17 16 15 20 20 F 1.39901 * 109.47159 * 330.00006 * 17 16 15 21 21 C 1.38180 * 119.16315 * 359.51902 * 16 15 14 22 22 N 1.31856 * 119.61944 * 270.02630 * 13 11 10 23 23 H 0.96998 * 120.00460 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47042 * 59.99784 * 9 7 2 25 25 H 1.08991 * 109.46773 * 299.99278 * 9 7 2 26 26 H 1.09000 * 109.46925 * 59.99756 * 10 9 7 27 27 H 1.08995 * 109.47000 * 299.99964 * 10 9 7 28 28 H 1.07997 * 120.41892 * 0.02562 * 14 13 11 29 29 H 1.08002 * 120.78834 * 179.97438 * 15 14 13 30 30 H 1.07999 * 119.62145 * 180.20788 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 16 5.8355 -2.6364 -0.0025 12 8 6.3102 -2.1986 1.2634 13 6 6.2320 -4.3532 -0.0029 14 6 6.3847 -5.0188 -1.2047 15 6 6.6961 -6.3696 -1.1940 16 6 6.8376 -7.0046 0.0306 17 6 7.1701 -8.4731 0.0948 18 9 8.5594 -8.6362 0.1170 19 9 6.6170 -9.0262 1.2547 20 9 6.6425 -9.1201 -1.0278 21 6 6.6746 -6.2728 1.1914 22 7 6.3790 -4.9884 1.1432 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8744 -0.6800 -0.8911 26 1 3.6579 -3.1505 -0.8907 27 1 3.6586 -3.1501 0.8892 28 1 6.2630 -4.4931 -2.1402 29 1 6.8210 -6.9155 -2.1176 30 1 6.7865 -6.7592 2.1492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123364916.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:47 Heat of formation + Delta-G solvation = -183.677363 kcal Electronic energy + Delta-G solvation = -20303.475437 eV Core-core repulsion = 16388.439997 eV Total energy + Delta-G solvation = -3915.035440 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.044 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.31121 -48.82446 -48.77147 -41.35114 -36.92382 -35.70798 -34.29613 -33.26570 -33.08995 -27.84600 -27.43232 -25.12103 -23.95329 -22.76185 -19.79881 -19.64358 -19.58391 -19.34156 -19.14267 -17.61129 -17.47368 -16.34790 -16.11677 -15.80747 -15.70197 -15.60253 -15.51804 -15.21266 -15.01471 -14.96564 -14.91267 -14.89954 -14.61017 -14.35486 -13.77778 -13.38586 -13.06345 -12.82557 -12.52566 -12.05857 -11.79021 -11.62155 -11.41583 -11.33311 -10.76736 -10.74434 -10.59403 -9.53814 -8.29971 -6.35839 -0.80406 0.00346 0.71527 1.37471 1.42159 1.42418 1.52900 1.58321 2.27681 2.37183 2.50613 2.75940 2.82270 3.05208 3.24419 3.40663 3.60008 3.89207 3.92872 4.21719 4.34643 4.48216 4.56042 4.71548 4.80955 5.23670 5.31359 5.33219 5.59617 6.25395 6.50271 6.71361 7.28771 8.86623 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.033464 B = 0.003322 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.510638 B = 8426.298336 C = 8742.972935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.943 3.057 4 H -0.242 1.242 5 H -0.288 1.288 6 H -0.253 1.253 7 C -0.531 4.531 8 H 0.031 0.969 9 C -0.001 4.001 10 C -0.425 4.425 11 S 1.417 4.583 12 O -0.896 6.896 13 C -0.230 4.230 14 C -0.087 4.087 15 C -0.031 4.031 16 C -0.217 4.217 17 C 0.522 3.478 18 F -0.174 7.174 19 F -0.179 7.179 20 F -0.169 7.169 21 C 0.116 3.884 22 N -0.472 5.472 23 H 0.267 0.733 24 H 0.004 0.996 25 H 0.064 0.936 26 H 0.140 0.860 27 H 0.049 0.951 28 H 0.221 0.779 29 H 0.195 0.805 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.105 -14.993 -9.698 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.765 3.235 4 H -0.165 1.165 5 H -0.214 1.214 6 H -0.176 1.176 7 C -0.570 4.570 8 H 0.050 0.950 9 C -0.040 4.040 10 C -0.562 4.562 11 S 1.614 4.386 12 O -0.891 6.891 13 C -0.459 4.459 14 C -0.107 4.107 15 C -0.057 4.057 16 C -0.221 4.221 17 C 0.467 3.533 18 F -0.155 7.155 19 F -0.160 7.160 20 F -0.150 7.150 21 C -0.045 4.045 22 N -0.181 5.181 23 H 0.076 0.924 24 H 0.022 0.978 25 H 0.082 0.918 26 H 0.158 0.842 27 H 0.068 0.932 28 H 0.238 0.762 29 H 0.212 0.788 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 19.512 -13.696 -8.892 25.444 hybrid contribution -1.136 -1.403 1.821 2.564 sum 18.377 -15.100 -7.072 24.814 Atomic orbital electron populations 1.70061 1.08393 1.28326 1.52337 1.26046 0.95655 1.03660 0.93921 0.85772 0.79241 0.78026 0.80491 1.16511 1.21435 1.17649 1.21378 0.91595 0.93163 1.50913 0.95033 1.19234 0.95061 0.91920 0.97786 1.27602 1.18182 1.03329 1.07123 1.68851 0.85301 0.78126 1.06370 1.93000 1.74746 1.74411 1.46976 1.30999 1.02642 1.19295 0.92988 1.22632 0.94099 0.94156 0.99862 1.22101 0.90711 0.95213 0.97706 1.21345 1.09026 0.93402 0.98331 1.17942 0.74578 0.86936 0.73817 1.93247 1.29856 1.96271 1.96136 1.93211 1.85474 1.87331 1.50004 1.93219 1.86294 1.83462 1.52029 1.23055 0.92710 0.89973 0.98753 1.68243 1.09944 1.09641 1.30227 0.92378 0.97786 0.91797 0.84201 0.93169 0.76227 0.78814 0.81145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 2 C 0.00 0.25 5.47 84.65 0.46 0.71 16 3 Si 0.94 42.71 27.47 68.60 1.88 44.59 16 4 H -0.24 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.25 -10.96 6.54 99.48 0.65 -10.30 16 7 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 8 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 9 C 0.00 -0.06 4.05 29.85 0.12 0.06 16 10 C -0.42 -15.09 5.82 71.98 0.42 -14.67 16 11 S 1.42 37.98 13.58 -56.49 -0.77 37.21 16 12 O -0.90 -37.30 17.59 -148.98 -2.62 -39.92 16 13 C -0.23 -5.63 6.48 84.69 0.55 -5.08 16 14 C -0.09 -1.16 9.80 22.36 0.22 -0.94 16 15 C -0.03 -0.39 9.52 22.47 0.21 -0.18 16 16 C -0.22 -4.00 5.46 -19.77 -0.11 -4.11 16 17 C 0.52 8.85 3.38 71.24 0.24 9.09 16 18 F -0.17 -3.02 17.30 44.97 0.78 -2.24 16 19 F -0.18 -3.44 16.49 44.97 0.74 -2.70 16 20 F -0.17 -2.63 16.53 44.97 0.74 -1.88 16 21 C 0.12 2.85 10.56 84.67 0.89 3.75 16 22 N -0.47 -14.72 9.96 -193.32 -1.93 -16.64 16 23 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 24 H 0.00 0.18 7.20 -2.39 -0.02 0.17 16 25 H 0.06 2.36 7.57 -2.39 -0.02 2.34 16 26 H 0.14 4.02 8.14 -2.39 -0.02 4.00 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.22 0.31 8.06 -2.91 -0.02 0.29 16 29 H 0.19 0.92 7.69 -2.91 -0.02 0.89 16 30 H 0.17 3.70 7.62 -2.91 -0.02 3.67 16 Total: -1.00 -86.99 294.57 3.52 -83.47 By element: Atomic # 1 Polarization: -2.77 SS G_CDS: 1.13 Total: -1.64 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 3.26 Total: -41.33 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -1.63 Total: -75.56 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -2.62 Total: -39.92 kcal Atomic # 9 Polarization: -9.09 SS G_CDS: 2.26 Total: -6.83 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.88 Total: 44.59 kcal Atomic # 16 Polarization: 37.98 SS G_CDS: -0.77 Total: 37.21 kcal Total: -86.99 3.52 -83.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123364916.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.205 kcal (2) G-P(sol) polarization free energy of solvation -86.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds