Wall clock time and date at job start Tue Mar 31 2020 07:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46623 * 179.75013 * 3 2 1 5 5 N 1.46506 * 109.46681 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99912 * 271.84385 * 5 4 3 7 7 C 1.50705 * 109.47366 * 265.05194 * 6 5 4 8 8 H 1.08005 * 119.99848 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00149 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00277 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00101 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47229 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47319 * 119.99959 * 11 9 7 14 14 H 1.48496 * 109.47295 * 240.00459 * 11 9 7 15 15 C 1.34772 * 119.99776 * 91.84921 * 5 4 3 16 16 O 1.21522 * 120.00401 * 354.61247 * 15 5 4 17 17 C 1.48118 * 119.99990 * 174.88810 * 15 5 4 18 18 C 1.39342 * 119.70768 * 173.35608 * 17 15 5 19 19 C 1.38525 * 119.07546 * 179.97438 * 18 17 15 20 20 C 1.38763 * 118.47873 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 120.33935 * 179.97438 * 20 19 18 22 22 C 1.38716 * 119.32619 * 359.97438 * 20 19 18 23 23 N 1.31495 * 120.87614 * 359.74530 * 22 20 19 24 24 H 1.09002 * 109.47134 * 59.75469 * 3 2 1 25 25 H 1.08995 * 109.47452 * 299.74854 * 3 2 1 26 26 H 1.08993 * 109.46954 * 60.00170 * 4 3 2 27 27 H 1.08991 * 109.47293 * 299.99608 * 4 3 2 28 28 H 1.08990 * 109.47471 * 25.05623 * 6 5 4 29 29 H 1.09006 * 109.47077 * 145.05745 * 6 5 4 30 30 H 0.96992 * 120.00325 * 179.97438 * 10 9 7 31 31 H 1.08007 * 120.46214 * 359.95689 * 18 17 15 32 32 H 1.08007 * 120.75912 * 180.02562 * 19 18 17 33 33 H 1.08005 * 119.56377 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1172 1.4435 -0.0063 5 7 4.5823 1.4441 -0.0057 6 6 5.3142 1.4094 1.2629 7 6 5.6708 2.8142 1.6759 8 1 5.3807 3.6494 1.0556 9 6 6.3672 3.0332 2.8454 10 7 6.7208 2.0161 3.6005 11 14 6.8084 4.7745 3.3577 12 1 6.2991 5.7328 2.3439 13 1 6.1920 5.0742 4.6750 14 1 8.2843 4.9010 3.4615 15 6 5.2566 1.4768 -1.1721 16 8 4.6535 1.4069 -2.2248 17 6 6.7333 1.5918 -1.1709 18 6 7.4352 1.4857 -2.3700 19 6 8.8159 1.5958 -2.3538 20 6 9.4486 1.8081 -1.1371 21 17 11.1769 1.9527 -1.0609 22 6 8.6859 1.9035 0.0176 23 7 7.3758 1.8006 -0.0285 24 1 2.9716 -0.5168 -0.8878 25 1 2.9716 -0.5091 0.8922 26 1 2.7537 1.9609 0.8814 27 1 2.7537 1.9532 -0.8985 28 1 4.6897 0.9525 2.0303 29 1 6.2258 0.8243 1.1404 30 1 7.2111 2.1701 4.4231 31 1 6.9100 1.3196 -3.2990 32 1 9.3870 1.5182 -3.2673 33 1 9.1743 2.0691 0.9666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134666204.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:20 Heat of formation + Delta-G solvation = 39.984964 kcal Electronic energy + Delta-G solvation = -20711.310255 eV Core-core repulsion = 17378.079326 eV Total energy + Delta-G solvation = -3333.230929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35430 -38.66945 -36.70607 -36.47947 -35.35857 -32.89545 -32.23496 -31.41412 -30.38470 -27.17117 -25.09304 -23.61228 -23.14361 -22.53245 -19.39897 -17.56025 -16.99055 -16.78586 -16.43317 -16.14401 -15.29495 -14.89062 -14.59739 -14.53882 -14.15036 -13.84204 -13.37201 -13.17701 -13.05003 -12.45264 -12.36373 -12.23269 -12.10287 -11.83448 -11.66243 -11.42036 -11.09986 -10.95241 -10.82012 -10.65937 -10.19996 -9.78308 -9.66253 -9.59321 -8.74726 -8.64095 -8.33588 -7.91463 -6.08299 -4.05379 0.81509 1.43997 2.10160 2.82446 2.93301 3.12687 3.24068 3.33731 3.37478 3.54720 4.16818 4.31222 4.38854 4.68882 4.88118 4.96990 5.12469 5.23573 5.29231 5.30351 5.40753 5.64609 5.90978 5.93701 6.07654 6.12319 6.20382 6.58701 6.67926 7.34924 7.50439 7.69090 7.82521 8.06905 8.17944 8.21721 8.69026 8.92584 9.53177 11.00102 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.006162 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.485067 B = 4542.836974 C = 6386.955473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.124 3.876 5 N -0.575 5.575 6 C 0.236 3.764 7 C -0.490 4.490 8 H 0.053 0.947 9 C 0.069 3.931 10 N -0.890 5.890 11 Si 0.881 3.119 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.569 3.431 16 O -0.563 6.563 17 C 0.078 3.922 18 C -0.109 4.109 19 C -0.091 4.091 20 C -0.075 4.075 21 Cl -0.067 7.067 22 C 0.109 3.891 23 N -0.354 5.354 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.260 0.740 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.684 -2.958 -7.872 10.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C -0.087 4.087 4 C -0.001 4.001 5 N -0.303 5.303 6 C 0.117 3.883 7 C -0.529 4.529 8 H 0.071 0.929 9 C -0.133 4.133 10 N -0.530 5.530 11 Si 0.710 3.290 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.210 1.210 15 C 0.356 3.644 16 O -0.444 6.444 17 C -0.061 4.061 18 C -0.130 4.130 19 C -0.118 4.118 20 C -0.105 4.105 21 Cl -0.039 7.039 22 C -0.051 4.051 23 N -0.064 5.064 24 H 0.128 0.872 25 H 0.132 0.868 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.390 -2.955 -7.435 8.690 hybrid contribution 1.625 1.064 -0.218 1.955 sum 5.016 -1.891 -7.653 9.344 Atomic orbital electron populations 1.81182 1.13074 1.08812 1.09679 1.29100 0.95108 0.92940 0.92519 1.19771 0.81328 1.01401 1.06156 1.21218 0.81214 0.93443 1.04262 1.48228 1.05265 1.68220 1.08567 1.19958 0.92257 0.98613 0.77475 1.21206 1.34367 0.91913 1.05414 0.92871 1.24715 0.95869 0.96252 0.96433 1.69909 1.39504 1.29625 1.13939 0.86708 0.78275 0.85553 0.78480 1.20049 1.21165 1.20986 1.17840 0.85695 0.77088 0.83796 1.90707 1.69020 1.53096 1.31561 1.21380 0.95192 0.99754 0.89737 1.22054 0.93223 0.98069 0.99681 1.21344 0.94324 0.99138 0.96948 1.22551 0.85577 1.05403 0.96936 1.98361 1.10541 1.96235 1.98728 1.23186 0.89544 0.95324 0.97047 1.69121 1.07337 1.04873 1.25110 0.87217 0.86848 0.89043 0.89884 0.95114 0.91349 0.92983 0.83384 0.83960 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.31 18.54 42.15 0.78 -6.53 16 2 C 0.22 3.07 15.43 -20.76 -0.32 2.75 16 3 C -0.05 -0.56 6.03 -29.52 -0.18 -0.73 16 4 C 0.12 1.88 5.32 -4.04 -0.02 1.85 16 5 N -0.57 -10.46 2.47 -176.08 -0.43 -10.89 16 6 C 0.24 4.97 4.75 -5.19 -0.02 4.94 16 7 C -0.49 -11.63 7.44 -34.44 -0.26 -11.88 16 8 H 0.05 1.33 7.81 -52.48 -0.41 0.92 16 9 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -22.72 13.29 55.43 0.74 -21.98 16 11 Si 0.88 19.79 29.54 -169.99 -5.02 14.77 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 C 0.57 10.57 7.61 -12.21 -0.09 10.48 16 16 O -0.56 -10.85 15.95 5.35 0.09 -10.77 16 17 C 0.08 1.38 6.55 -83.01 -0.54 0.84 16 18 C -0.11 -1.58 9.63 -39.06 -0.38 -1.96 16 19 C -0.09 -1.16 9.97 -39.28 -0.39 -1.55 16 20 C -0.08 -1.06 6.35 -39.21 -0.25 -1.31 16 21 Cl -0.07 -0.83 28.99 -51.86 -1.50 -2.33 16 22 C 0.11 1.83 10.98 -17.52 -0.19 1.64 16 23 N -0.35 -6.74 4.79 -9.77 -0.05 -6.79 16 24 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 27 H 0.08 1.27 7.45 -51.93 -0.39 0.89 16 28 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 29 H 0.07 1.53 5.73 -51.93 -0.30 1.23 16 30 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 31 H 0.15 1.93 7.65 -52.48 -0.40 1.53 16 32 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 33 H 0.17 2.78 8.06 -52.48 -0.42 2.36 16 LS Contribution 315.87 15.07 4.76 4.76 Total: -1.00 -27.56 315.87 -6.55 -34.11 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.16 Total: -1.00 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -2.74 Total: 6.65 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 1.04 Total: -46.19 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.56 -6.55 -34.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134666204.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.090 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds