Wall clock time and date at job start Tue Mar 31 2020 07:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46623 * 179.75013 * 3 2 1 5 5 N 1.46506 * 109.46681 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99912 * 271.84385 * 5 4 3 7 7 C 1.50705 * 109.47366 * 265.05194 * 6 5 4 8 8 H 1.08005 * 119.99848 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00149 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00277 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00101 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47229 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47319 * 119.99959 * 11 9 7 14 14 H 1.48496 * 109.47295 * 240.00459 * 11 9 7 15 15 C 1.34772 * 119.99776 * 91.84921 * 5 4 3 16 16 O 1.21522 * 120.00401 * 354.61247 * 15 5 4 17 17 C 1.48118 * 119.99990 * 174.88810 * 15 5 4 18 18 C 1.39342 * 119.70768 * 173.35608 * 17 15 5 19 19 C 1.38525 * 119.07546 * 179.97438 * 18 17 15 20 20 C 1.38763 * 118.47873 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 120.33935 * 179.97438 * 20 19 18 22 22 C 1.38716 * 119.32619 * 359.97438 * 20 19 18 23 23 N 1.31495 * 120.87614 * 359.74530 * 22 20 19 24 24 H 1.09002 * 109.47134 * 59.75469 * 3 2 1 25 25 H 1.08995 * 109.47452 * 299.74854 * 3 2 1 26 26 H 1.08993 * 109.46954 * 60.00170 * 4 3 2 27 27 H 1.08991 * 109.47293 * 299.99608 * 4 3 2 28 28 H 1.08990 * 109.47471 * 25.05623 * 6 5 4 29 29 H 1.09006 * 109.47077 * 145.05745 * 6 5 4 30 30 H 0.96992 * 120.00325 * 179.97438 * 10 9 7 31 31 H 1.08007 * 120.46214 * 359.95689 * 18 17 15 32 32 H 1.08007 * 120.75912 * 180.02562 * 19 18 17 33 33 H 1.08005 * 119.56377 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1172 1.4435 -0.0063 5 7 4.5823 1.4441 -0.0057 6 6 5.3142 1.4094 1.2629 7 6 5.6708 2.8142 1.6759 8 1 5.3807 3.6494 1.0556 9 6 6.3672 3.0332 2.8454 10 7 6.7208 2.0161 3.6005 11 14 6.8084 4.7745 3.3577 12 1 6.2991 5.7328 2.3439 13 1 6.1920 5.0742 4.6750 14 1 8.2843 4.9010 3.4615 15 6 5.2566 1.4768 -1.1721 16 8 4.6535 1.4069 -2.2248 17 6 6.7333 1.5918 -1.1709 18 6 7.4352 1.4857 -2.3700 19 6 8.8159 1.5958 -2.3538 20 6 9.4486 1.8081 -1.1371 21 17 11.1769 1.9527 -1.0609 22 6 8.6859 1.9035 0.0176 23 7 7.3758 1.8006 -0.0285 24 1 2.9716 -0.5168 -0.8878 25 1 2.9716 -0.5091 0.8922 26 1 2.7537 1.9609 0.8814 27 1 2.7537 1.9532 -0.8985 28 1 4.6897 0.9525 2.0303 29 1 6.2258 0.8243 1.1404 30 1 7.2111 2.1701 4.4231 31 1 6.9100 1.3196 -3.2990 32 1 9.3870 1.5182 -3.2673 33 1 9.1743 2.0691 0.9666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134666204.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:19 Heat of formation + Delta-G solvation = 26.236105 kcal Electronic energy + Delta-G solvation = -20711.906450 eV Core-core repulsion = 17378.079326 eV Total energy + Delta-G solvation = -3333.827124 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.65989 -40.00058 -37.92038 -37.58474 -36.80667 -34.54699 -33.54415 -32.70895 -31.63306 -28.88477 -26.34421 -25.04779 -24.57543 -23.86235 -20.74467 -18.85774 -18.36324 -18.11054 -18.01706 -17.38909 -16.64231 -16.35047 -15.99801 -15.97634 -15.45487 -15.06889 -14.67483 -14.40440 -14.30218 -14.12526 -13.63113 -13.51457 -13.42629 -13.10561 -13.00148 -12.82540 -12.65371 -12.51927 -12.17446 -12.04464 -11.77514 -11.53722 -11.12931 -10.80883 -10.37020 -9.96556 -9.79897 -9.43363 -7.96583 -5.96882 -0.41448 0.29584 0.99232 1.43060 1.49789 1.55151 1.63565 1.79258 1.80394 2.23034 2.54784 2.89576 3.14634 3.36075 3.41324 3.74550 3.80231 3.97516 4.11132 4.15255 4.21492 4.56390 4.76137 4.80827 4.91353 4.97798 5.02999 5.09489 5.43925 5.63143 5.90637 5.97140 6.36565 6.54041 6.56881 6.88628 7.06322 7.30165 7.64316 9.11060 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.006162 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.485067 B = 4542.836974 C = 6386.955473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.246 3.754 3 C -0.030 4.030 4 C 0.120 3.880 5 N -0.577 5.577 6 C 0.253 3.747 7 C -0.484 4.484 8 H 0.036 0.964 9 C 0.037 3.963 10 N -0.914 5.914 11 Si 0.923 3.077 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.281 1.281 15 C 0.566 3.434 16 O -0.573 6.573 17 C 0.051 3.949 18 C -0.099 4.099 19 C -0.073 4.073 20 C -0.067 4.067 21 Cl -0.047 7.047 22 C 0.092 3.908 23 N -0.390 5.390 24 H 0.124 0.876 25 H 0.130 0.870 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.023 0.977 29 H 0.060 0.940 30 H 0.259 0.741 31 H 0.166 0.834 32 H 0.183 0.817 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.808 -3.194 -9.389 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.071 4.071 3 C -0.071 4.071 4 C -0.004 4.004 5 N -0.305 5.305 6 C 0.133 3.867 7 C -0.523 4.523 8 H 0.054 0.946 9 C -0.162 4.162 10 N -0.555 5.555 11 Si 0.752 3.248 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.207 1.207 15 C 0.354 3.646 16 O -0.454 6.454 17 C -0.087 4.087 18 C -0.120 4.120 19 C -0.099 4.099 20 C -0.096 4.096 21 Cl -0.018 7.018 22 C -0.068 4.068 23 N -0.101 5.101 24 H 0.141 0.859 25 H 0.147 0.853 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.184 0.816 32 H 0.200 0.800 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.503 -3.185 -8.958 10.520 hybrid contribution 1.387 1.153 0.155 1.810 sum 5.890 -2.032 -8.803 10.785 Atomic orbital electron populations 1.81211 1.14287 1.10063 1.11211 1.29195 0.95044 0.91700 0.91178 1.19689 0.80107 0.99690 1.07591 1.21307 0.79692 0.95295 1.04105 1.48131 1.06284 1.68441 1.07675 1.19562 0.92006 0.96861 0.78317 1.21263 1.33590 0.92640 1.04825 0.94614 1.25106 0.96246 0.98097 0.96765 1.69967 1.40675 1.30573 1.14321 0.86064 0.78007 0.83080 0.77692 1.20712 1.21387 1.20741 1.18060 0.86337 0.76629 0.83576 1.90688 1.69444 1.53726 1.31579 1.21423 0.94857 1.01725 0.90710 1.22255 0.93961 0.96650 0.99089 1.21743 0.93736 0.96682 0.97747 1.22513 0.86537 1.04011 0.96573 1.98374 1.08690 1.96024 1.98708 1.23068 0.89310 0.96618 0.97846 1.68878 1.08620 1.06138 1.26452 0.85856 0.85265 0.89292 0.90026 0.95889 0.92248 0.93161 0.81605 0.79964 0.82707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.58 18.54 20.01 0.37 -15.21 16 2 C 0.25 6.53 15.43 89.44 1.38 7.91 16 3 C -0.03 -0.69 6.03 28.79 0.17 -0.52 16 4 C 0.12 3.57 5.32 86.38 0.46 4.03 16 5 N -0.58 -20.83 2.47 -829.27 -2.05 -22.87 16 6 C 0.25 10.71 4.75 85.64 0.41 11.12 16 7 C -0.48 -23.22 7.44 25.60 0.19 -23.03 16 8 H 0.04 1.81 7.81 -2.91 -0.02 1.79 16 9 C 0.04 1.83 5.46 84.65 0.46 2.29 16 10 N -0.91 -47.10 13.29 21.44 0.28 -46.82 16 11 Si 0.92 40.85 29.54 68.60 2.03 42.88 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 15 C 0.57 20.64 7.61 86.87 0.66 21.30 16 16 O -0.57 -21.33 15.95 -3.79 -0.06 -21.39 16 17 C 0.05 1.76 6.55 41.90 0.27 2.03 16 18 C -0.10 -2.61 9.63 22.60 0.22 -2.40 16 19 C -0.07 -1.62 9.97 22.46 0.22 -1.39 16 20 C -0.07 -1.74 6.35 22.51 0.14 -1.60 16 21 Cl -0.05 -1.04 28.99 -2.72 -0.08 -1.12 16 22 C 0.09 3.05 10.98 84.86 0.93 3.98 16 23 N -0.39 -14.84 4.79 -184.82 -0.89 -15.72 16 24 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.09 2.66 8.08 -2.39 -0.02 2.64 16 27 H 0.08 2.45 7.45 -2.39 -0.02 2.43 16 28 H 0.02 1.01 8.03 -2.39 -0.02 0.99 16 29 H 0.06 2.69 5.73 -2.38 -0.01 2.68 16 30 H 0.26 12.94 8.31 -92.71 -0.77 12.17 16 31 H 0.17 3.79 7.65 -2.91 -0.02 3.77 16 32 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.16 5.31 8.06 -2.91 -0.02 5.29 16 Total: -1.00 -58.74 315.87 6.28 -52.46 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.15 Total: 4.06 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 5.52 Total: 23.73 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -2.28 Total: -100.62 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.06 Total: -21.39 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -58.74 6.28 -52.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134666204.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.694 kcal (2) G-P(sol) polarization free energy of solvation -58.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds