Wall clock time and date at job start Tue Mar 31 2020 07:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33423 * 122.71259 * 2 1 4 4 S 1.76177 * 108.06474 * 179.74652 * 3 2 1 5 5 C 1.70966 * 90.34460 * 0.32609 * 4 3 2 6 6 N 1.38992 * 124.94433 * 179.97438 * 5 4 3 7 7 C 1.34774 * 119.99816 * 359.69257 * 6 5 4 8 8 O 1.21599 * 120.00311 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00154 * 180.02562 * 7 6 5 10 10 C 1.40646 * 120.00478 * 180.02562 * 9 7 6 11 11 C 1.40643 * 126.07636 * 359.95847 * 10 9 7 12 12 N 1.30923 * 108.38969 * 179.79102 * 11 10 9 13 13 N 1.40067 * 108.40102 * 0.38338 * 12 11 10 14 14 C 1.37320 * 126.07294 * 179.87921 * 13 12 11 15 15 H 1.08002 * 120.00430 * 179.69232 * 14 13 12 16 16 C 1.38987 * 120.00018 * 359.41109 * 14 13 12 17 17 N 1.31304 * 119.99809 * 0.27648 * 16 14 13 18 18 Si 1.86798 * 120.00460 * 180.27801 * 16 14 13 19 19 H 1.48508 * 109.46605 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 119.99867 * 18 16 14 21 21 H 1.48498 * 109.47150 * 240.00077 * 18 16 14 22 22 C 1.35660 * 126.08139 * 180.02562 * 10 9 7 23 23 N 1.29629 * 110.10810 * 359.66772 * 5 4 3 24 24 H 1.09007 * 109.47453 * 269.97775 * 1 2 3 25 25 H 1.08998 * 109.47711 * 29.97850 * 1 2 3 26 26 H 1.09001 * 109.47485 * 149.98016 * 1 2 3 27 27 H 1.08000 * 125.96561 * 359.97329 * 3 2 1 28 28 H 0.96993 * 120.00145 * 179.70185 * 6 5 4 29 29 H 0.97006 * 119.99502 * 0.02562 * 9 7 6 30 30 H 1.07994 * 125.80382 * 0.02562 * 11 10 9 31 31 H 0.96996 * 120.00269 * 179.97438 * 17 16 14 32 32 H 1.07994 * 126.24787 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2280 1.1226 0.0000 4 16 3.9325 0.6771 0.0074 5 6 3.5101 -0.9795 0.0001 6 7 4.4175 -2.0325 0.0010 7 6 5.7415 -1.7810 0.0018 8 8 6.1424 -0.6329 0.0022 9 7 6.6214 -2.8019 0.0021 10 6 8.0032 -2.5395 0.0035 11 6 8.6048 -1.2682 0.0038 12 7 9.9044 -1.4263 0.0098 13 7 10.1829 -2.7990 0.0046 14 6 11.4314 -3.3708 0.0059 15 1 11.5330 -4.4460 0.0065 16 6 12.5644 -2.5658 0.0006 17 7 12.4409 -1.2585 -0.0002 18 14 14.2628 -3.3434 -0.0054 19 1 14.1298 -4.8226 -0.0028 20 1 14.9994 -2.9143 -1.2213 21 1 15.0091 -2.9119 1.2037 22 6 8.9926 -3.4676 0.0035 23 7 2.2205 -1.1107 0.0001 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.8353 2.1287 -0.0004 28 1 4.0977 -2.9482 0.0009 29 1 6.3016 -3.7177 0.0014 30 1 8.0833 -0.3225 0.0034 31 1 13.2316 -0.6967 -0.0036 32 1 8.8625 -4.5396 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147679229.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:56 Heat of formation + Delta-G solvation = 112.533074 kcal Electronic energy + Delta-G solvation = -19846.491264 eV Core-core repulsion = 16550.742715 eV Total energy + Delta-G solvation = -3295.748549 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63076 -39.68954 -39.00988 -35.06445 -34.49109 -33.25546 -31.16367 -30.26090 -27.94109 -27.44672 -25.14962 -24.03247 -21.73482 -21.05490 -20.26617 -19.49990 -18.19544 -17.88851 -17.04970 -16.51031 -15.84000 -15.53090 -15.06190 -14.59709 -14.56535 -13.99123 -13.84262 -13.37862 -13.01385 -12.95717 -12.77973 -12.57137 -11.74724 -11.63391 -11.33923 -11.24489 -10.89835 -10.80380 -10.53988 -10.39411 -9.69862 -9.61791 -9.27619 -9.05136 -8.89323 -8.17473 -8.08881 -6.81249 -6.60753 -4.28709 0.91062 1.29472 2.03103 2.41148 2.65023 2.91606 3.02993 3.08719 3.18787 3.64030 3.76619 4.14887 4.34034 4.53933 4.84294 4.97226 5.18492 5.33437 5.48693 5.63467 5.71338 5.95611 6.09879 6.20410 6.36582 6.55067 6.84179 6.88323 7.10308 7.15290 7.78163 7.82237 8.09602 8.16728 8.51302 8.69853 9.30594 9.59477 10.35162 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.060827 B = 0.002926 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.213099 B = 9567.230749 C =10012.287393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.088 3.912 3 C -0.338 4.338 4 S 0.258 5.742 5 C 0.274 3.726 6 N -0.639 5.639 7 C 0.693 3.307 8 O -0.547 6.547 9 N -0.620 5.620 10 C -0.052 4.052 11 C -0.030 4.030 12 N -0.259 5.259 13 N -0.141 5.141 14 C -0.322 4.322 15 H 0.118 0.882 16 C 0.046 3.954 17 N -0.768 5.768 18 Si 0.935 3.065 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.080 4.080 23 N -0.529 5.529 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.170 0.830 28 H 0.416 0.584 29 H 0.400 0.600 30 H 0.178 0.822 31 H 0.275 0.725 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.156 -0.802 -0.007 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.045 4.045 3 C -0.479 4.479 4 S 0.508 5.492 5 C -0.095 4.095 6 N -0.291 5.291 7 C 0.392 3.608 8 O -0.424 6.424 9 N -0.264 5.264 10 C -0.158 4.158 11 C -0.205 4.205 12 N -0.089 5.089 13 N 0.092 4.908 14 C -0.454 4.454 15 H 0.135 0.865 16 C -0.172 4.172 17 N -0.395 5.395 18 Si 0.759 3.241 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.231 4.231 23 N -0.254 5.254 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.188 0.812 28 H 0.253 0.747 29 H 0.233 0.767 30 H 0.194 0.806 31 H 0.086 0.914 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.614 0.969 0.005 13.649 hybrid contribution -1.416 -1.957 -0.007 2.416 sum -15.030 -0.989 -0.002 15.063 Atomic orbital electron populations 1.20310 0.87658 1.02925 1.02579 1.19711 0.97362 0.86110 1.01314 1.27256 0.99665 1.03575 1.17429 1.85231 1.00882 0.95851 1.67268 1.23084 0.90008 0.94276 1.02102 1.41801 1.03597 1.08132 1.75613 1.15625 0.79245 0.85869 0.80080 1.90775 1.75336 1.19351 1.56914 1.41333 1.03992 1.06912 1.74150 1.16993 0.79553 0.94432 1.24787 1.24106 0.91633 0.97024 1.07777 1.78293 1.12435 0.92540 1.25680 1.44571 1.03646 1.03688 1.38906 1.19935 0.79141 0.93026 1.53342 0.86486 1.25656 1.00766 0.95286 0.95444 1.70221 1.30802 1.03330 1.35098 0.85752 0.80286 0.79527 0.78519 1.18674 1.19880 1.19881 1.21179 0.85553 0.96476 1.19940 1.66124 1.02336 1.32742 1.24184 0.90979 0.90919 0.90983 0.81238 0.74701 0.76674 0.80561 0.91426 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.30 36.00 0.37 -0.29 16 2 C 0.09 1.10 6.74 -84.20 -0.57 0.53 16 3 C -0.34 -4.06 11.11 29.05 0.32 -3.73 16 4 S 0.26 3.72 20.21 -107.50 -2.17 1.55 16 5 C 0.27 4.06 8.19 -87.35 -0.72 3.35 16 6 N -0.64 -8.74 5.41 -17.48 -0.09 -8.83 16 7 C 0.69 11.69 8.50 -86.92 -0.74 10.95 16 8 O -0.55 -10.91 10.95 5.28 0.06 -10.85 16 9 N -0.62 -10.27 5.47 -14.36 -0.08 -10.35 16 10 C -0.05 -1.14 6.90 -83.82 -0.58 -1.72 16 11 C -0.03 -0.75 10.85 -17.03 -0.18 -0.94 16 12 N -0.26 -7.31 10.40 30.80 0.32 -6.99 16 13 N -0.14 -3.75 3.74 -11.41 -0.04 -3.79 16 14 C -0.32 -8.30 10.25 -14.82 -0.15 -8.45 16 15 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 16 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 17 N -0.77 -21.04 11.81 55.50 0.66 -20.39 16 18 Si 0.94 18.53 29.55 -169.99 -5.02 13.50 16 19 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 C -0.08 -1.80 11.49 -16.39 -0.19 -1.99 16 23 N -0.53 -7.61 10.58 -11.28 -0.12 -7.73 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.42 4.31 8.83 -40.82 -0.36 3.95 16 29 H 0.40 4.89 8.84 -40.82 -0.36 4.53 16 30 H 0.18 4.39 5.92 -52.49 -0.31 4.08 16 31 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.15 2.71 8.06 -52.49 -0.42 2.29 16 LS Contribution 299.53 15.07 4.51 4.51 Total: -1.00 -32.71 299.53 -7.20 -39.91 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -2.69 Total: 10.69 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.53 Total: -1.23 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.64 Total: -58.08 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.06 Total: -10.85 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.50 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -2.17 Total: 1.55 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.71 -7.20 -39.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147679229.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.443 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds