Wall clock time and date at job start Tue Mar 31 2020 07:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33423 * 122.71259 * 2 1 4 4 S 1.76177 * 108.06474 * 179.74652 * 3 2 1 5 5 C 1.70966 * 90.34460 * 0.32609 * 4 3 2 6 6 N 1.38992 * 124.94433 * 179.97438 * 5 4 3 7 7 C 1.34774 * 119.99816 * 359.69257 * 6 5 4 8 8 O 1.21599 * 120.00311 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00154 * 180.02562 * 7 6 5 10 10 C 1.40646 * 120.00478 * 180.02562 * 9 7 6 11 11 C 1.40643 * 126.07636 * 359.95847 * 10 9 7 12 12 N 1.30923 * 108.38969 * 179.79102 * 11 10 9 13 13 N 1.40067 * 108.40102 * 0.38338 * 12 11 10 14 14 C 1.37320 * 126.07294 * 179.87921 * 13 12 11 15 15 H 1.08002 * 120.00430 * 179.69232 * 14 13 12 16 16 C 1.38987 * 120.00018 * 359.41109 * 14 13 12 17 17 N 1.31304 * 119.99809 * 0.27648 * 16 14 13 18 18 Si 1.86798 * 120.00460 * 180.27801 * 16 14 13 19 19 H 1.48508 * 109.46605 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 119.99867 * 18 16 14 21 21 H 1.48498 * 109.47150 * 240.00077 * 18 16 14 22 22 C 1.35660 * 126.08139 * 180.02562 * 10 9 7 23 23 N 1.29629 * 110.10810 * 359.66772 * 5 4 3 24 24 H 1.09007 * 109.47453 * 269.97775 * 1 2 3 25 25 H 1.08998 * 109.47711 * 29.97850 * 1 2 3 26 26 H 1.09001 * 109.47485 * 149.98016 * 1 2 3 27 27 H 1.08000 * 125.96561 * 359.97329 * 3 2 1 28 28 H 0.96993 * 120.00145 * 179.70185 * 6 5 4 29 29 H 0.97006 * 119.99502 * 0.02562 * 9 7 6 30 30 H 1.07994 * 125.80382 * 0.02562 * 11 10 9 31 31 H 0.96996 * 120.00269 * 179.97438 * 17 16 14 32 32 H 1.07994 * 126.24787 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2280 1.1226 0.0000 4 16 3.9325 0.6771 0.0074 5 6 3.5101 -0.9795 0.0001 6 7 4.4175 -2.0325 0.0010 7 6 5.7415 -1.7810 0.0018 8 8 6.1424 -0.6329 0.0022 9 7 6.6214 -2.8019 0.0021 10 6 8.0032 -2.5395 0.0035 11 6 8.6048 -1.2682 0.0038 12 7 9.9044 -1.4263 0.0098 13 7 10.1829 -2.7990 0.0046 14 6 11.4314 -3.3708 0.0059 15 1 11.5330 -4.4460 0.0065 16 6 12.5644 -2.5658 0.0006 17 7 12.4409 -1.2585 -0.0002 18 14 14.2628 -3.3434 -0.0054 19 1 14.1298 -4.8226 -0.0028 20 1 14.9994 -2.9143 -1.2213 21 1 15.0091 -2.9119 1.2037 22 6 8.9926 -3.4676 0.0035 23 7 2.2205 -1.1107 0.0001 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.8353 2.1287 -0.0004 28 1 4.0977 -2.9482 0.0009 29 1 6.3016 -3.7177 0.0014 30 1 8.0833 -0.3225 0.0034 31 1 13.2316 -0.6967 -0.0036 32 1 8.8625 -4.5396 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147679229.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:55 Heat of formation + Delta-G solvation = 89.363173 kcal Electronic energy + Delta-G solvation = -19847.495987 eV Core-core repulsion = 16550.742715 eV Total energy + Delta-G solvation = -3296.753272 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.07053 -41.14803 -40.37958 -36.38439 -35.99369 -35.01906 -32.33530 -31.99087 -29.63114 -28.37999 -26.91337 -25.30046 -23.10140 -22.74736 -21.65761 -21.09399 -19.51449 -19.34104 -18.46514 -17.68083 -17.38810 -17.10584 -16.59239 -16.00477 -15.73792 -15.47777 -15.13520 -15.02980 -14.72166 -13.99112 -13.64890 -13.48786 -13.36544 -13.23098 -12.93961 -12.87974 -12.26400 -12.05731 -12.01959 -11.80724 -11.07113 -11.06334 -10.80295 -10.73725 -10.16924 -10.08990 -9.23088 -8.52960 -8.45545 -6.22690 -0.17278 0.21072 0.91858 1.21973 1.23912 1.42628 1.50914 1.60533 1.80347 2.03494 2.13845 2.54627 2.71290 3.10815 3.16259 3.61502 4.38287 4.43567 4.46619 4.55723 4.76794 4.85533 4.88971 4.97915 4.99891 5.04958 5.27633 5.36030 5.43662 5.67406 5.97279 6.31371 6.65512 6.75169 6.86487 7.25581 7.46847 7.68837 8.53881 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.060827 B = 0.002926 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.213099 B = 9567.230749 C =10012.287393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.070 3.930 3 C -0.318 4.318 4 S 0.212 5.788 5 C 0.256 3.744 6 N -0.622 5.622 7 C 0.696 3.304 8 O -0.579 6.579 9 N -0.609 5.609 10 C -0.032 4.032 11 C -0.053 4.053 12 N -0.309 5.309 13 N -0.169 5.169 14 C -0.352 4.352 15 H 0.142 0.858 16 C -0.007 4.007 17 N -0.824 5.824 18 Si 1.018 2.982 19 H -0.241 1.241 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.074 4.074 23 N -0.531 5.531 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.200 0.800 28 H 0.432 0.568 29 H 0.423 0.577 30 H 0.172 0.828 31 H 0.276 0.724 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.841 -2.553 -0.013 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.458 4.458 4 S 0.461 5.539 5 C -0.112 4.112 6 N -0.275 5.275 7 C 0.395 3.605 8 O -0.457 6.457 9 N -0.257 5.257 10 C -0.139 4.139 11 C -0.229 4.229 12 N -0.141 5.141 13 N 0.063 4.937 14 C -0.483 4.483 15 H 0.159 0.841 16 C -0.218 4.218 17 N -0.452 5.452 18 Si 0.837 3.163 19 H -0.163 1.163 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.224 4.224 23 N -0.256 5.256 24 H 0.102 0.898 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.218 0.782 28 H 0.273 0.727 29 H 0.261 0.739 30 H 0.189 0.811 31 H 0.086 0.914 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -15.392 -0.841 -0.001 15.415 hybrid contribution -1.191 -1.361 -0.004 1.809 sum -16.583 -2.201 -0.005 16.729 Atomic orbital electron populations 1.20433 0.84810 1.04162 1.03741 1.20393 0.99150 0.85627 1.01005 1.27509 0.97458 1.04971 1.15887 1.85401 1.03694 0.96869 1.67895 1.23206 0.90324 0.94240 1.03453 1.41414 1.02272 1.08931 1.74919 1.15680 0.80120 0.85293 0.79423 1.90779 1.76348 1.20772 1.57751 1.41045 1.01947 1.08298 1.74368 1.16963 0.81808 0.92907 1.22199 1.24195 0.91497 0.98364 1.08844 1.78189 1.13993 0.94541 1.27348 1.44843 1.05041 1.03374 1.40486 1.20640 0.79416 0.94339 1.53861 0.84087 1.26852 1.05198 0.95551 0.94235 1.70397 1.32041 1.05326 1.37446 0.84552 0.74109 0.79550 0.78104 1.16322 1.19909 1.19910 1.21929 0.84366 0.98450 1.17676 1.66182 1.02032 1.33752 1.23675 0.89757 0.88594 0.90896 0.78250 0.72728 0.73866 0.81136 0.91437 0.79246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.30 71.23 0.73 -0.31 16 2 C 0.07 1.59 6.74 41.44 0.28 1.87 16 3 C -0.32 -6.97 11.11 66.73 0.74 -6.23 16 4 S 0.21 6.07 20.21 -56.49 -1.14 4.93 16 5 C 0.26 7.35 8.19 179.21 1.47 8.82 16 6 N -0.62 -16.21 5.41 -327.46 -1.77 -17.98 16 7 C 0.70 23.01 8.50 179.06 1.52 24.53 16 8 O -0.58 -23.43 10.95 -4.03 -0.04 -23.47 16 9 N -0.61 -19.28 5.47 -317.60 -1.74 -21.01 16 10 C -0.03 -1.40 6.90 37.72 0.26 -1.14 16 11 C -0.05 -2.78 10.85 85.42 0.93 -1.85 16 12 N -0.31 -18.12 10.40 -56.47 -0.59 -18.71 16 13 N -0.17 -9.06 3.74 -190.01 -0.71 -9.77 16 14 C -0.35 -18.11 10.25 84.01 0.86 -17.25 16 15 H 0.14 6.27 7.83 -2.91 -0.02 6.24 16 16 C -0.01 -0.35 5.50 84.95 0.47 0.12 16 17 N -0.82 -46.91 11.81 21.66 0.26 -46.66 16 18 Si 1.02 37.95 29.55 68.60 2.03 39.98 16 19 H -0.24 -7.99 7.11 99.48 0.71 -7.28 16 20 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 22 C -0.07 -3.22 11.49 83.37 0.96 -2.26 16 23 N -0.53 -14.37 10.58 -189.60 -2.01 -16.38 16 24 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.10 0.94 8.12 -2.39 -0.02 0.92 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.20 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.43 8.09 8.83 -92.71 -0.82 7.27 16 29 H 0.42 9.20 8.84 -92.70 -0.82 8.38 16 30 H 0.17 8.93 5.92 -2.91 -0.02 8.92 16 31 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.19 6.38 8.06 -2.91 -0.02 6.35 16 Total: -1.00 -74.11 299.53 2.07 -72.04 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.43 Total: 30.75 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 8.22 Total: 6.30 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -6.56 Total: -130.52 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.04 Total: -23.47 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.14 Total: 4.93 kcal Total: -74.11 2.07 -72.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147679229.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.400 kcal (2) G-P(sol) polarization free energy of solvation -74.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds