Wall clock time and date at job start Tue Mar 31 2020 06:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36933 * 119.99804 * 2 1 4 4 H 1.08002 * 119.99433 * 205.11392 * 3 2 1 5 5 C 1.38808 * 120.00171 * 25.10713 * 3 2 1 6 6 N 1.31612 * 120.00193 * 10.37634 * 5 3 2 7 7 Si 1.86801 * 119.99838 * 190.37205 * 5 3 2 8 8 H 1.48504 * 109.47134 * 90.00477 * 7 5 3 9 9 H 1.48511 * 109.47074 * 210.00188 * 7 5 3 10 10 H 1.48501 * 109.47267 * 330.00105 * 7 5 3 11 11 C 1.46496 * 119.99749 * 179.97438 * 2 1 3 12 12 C 1.50694 * 109.47569 * 275.36150 * 11 2 1 13 13 C 1.38237 * 120.00699 * 99.73287 * 12 11 2 14 14 C 1.38221 * 120.01118 * 180.02562 * 13 12 11 15 15 C 1.50701 * 119.98322 * 179.97438 * 14 13 12 16 16 F 1.39896 * 109.47790 * 89.99977 * 15 14 13 17 17 F 1.39907 * 109.46935 * 209.99926 * 15 14 13 18 18 F 1.39894 * 109.47039 * 329.99395 * 15 14 13 19 19 C 1.38262 * 120.02843 * 359.70090 * 14 13 12 20 20 C 1.38190 * 120.01234 * 0.55345 * 19 14 13 21 21 C 1.38332 * 120.00625 * 279.71770 * 12 11 2 22 22 Cl 1.73601 * 120.01414 * 359.97438 * 21 12 11 23 23 H 1.08996 * 109.47507 * 266.50717 * 1 2 3 24 24 H 1.09001 * 109.46739 * 26.51513 * 1 2 3 25 25 H 1.09007 * 109.47056 * 146.50552 * 1 2 3 26 26 H 0.97006 * 120.00478 * 179.97438 * 6 5 3 27 27 H 1.09000 * 109.46865 * 155.35880 * 11 2 1 28 28 H 1.09006 * 109.47240 * 35.36733 * 11 2 1 29 29 H 1.07992 * 119.99279 * 359.97438 * 13 12 11 30 30 H 1.07999 * 119.99708 * 180.29792 * 19 14 13 31 31 H 1.07998 * 120.00867 * 179.74315 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1531 1.2300 -0.3970 5 6 1.5540 2.3312 0.5101 6 7 0.4220 2.2436 1.1756 7 14 2.3592 3.9969 0.2519 8 1 1.8584 4.5985 -1.0101 9 1 2.0271 4.8893 1.3916 10 1 3.8322 3.8272 0.1690 11 6 2.1975 -1.2687 0.0006 12 6 2.3337 -1.7696 1.4153 13 6 1.4797 -2.7488 1.8872 14 6 1.6043 -3.2079 3.1850 15 6 0.6725 -4.2751 3.6990 16 9 1.2240 -5.5361 3.4483 17 9 0.4906 -4.1112 5.0765 18 9 -0.5620 -4.1685 3.0497 19 6 2.5869 -2.6925 4.0100 20 6 3.4378 -1.7099 3.5410 21 6 3.3136 -1.2498 2.2419 22 17 4.3871 -0.0207 1.6496 23 1 -0.3634 -0.0626 1.0257 24 1 -0.3633 0.9196 -0.4588 25 1 -0.3633 -0.8571 -0.5672 26 1 0.0058 3.0440 1.5324 27 1 3.1881 -1.1165 -0.4280 28 1 1.6534 -2.0027 -0.5940 29 1 0.7146 -3.1546 1.2421 30 1 2.6868 -3.0551 5.0224 31 1 4.2026 -1.3044 4.1867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158169042.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:33 Heat of formation + Delta-G solvation = -109.439502 kcal Electronic energy + Delta-G solvation = -21584.066201 eV Core-core repulsion = 17670.206250 eV Total energy + Delta-G solvation = -3913.859951 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.03579 -47.54500 -47.50581 -39.23788 -35.91777 -35.59343 -32.29735 -31.32432 -30.29431 -26.37893 -25.69330 -25.62916 -22.36322 -21.89224 -20.46543 -18.37454 -18.24857 -17.79046 -16.80873 -16.32050 -15.28749 -14.96847 -14.44800 -14.35810 -14.21765 -13.95981 -13.83910 -13.72026 -13.66328 -13.28295 -13.10466 -12.78884 -12.66272 -12.04352 -11.52181 -11.29517 -11.12313 -11.04701 -10.88970 -10.66374 -10.42057 -10.32151 -9.98394 -9.83674 -8.71857 -8.57840 -8.35471 -6.83995 -5.81346 -3.23338 1.12666 1.50981 2.67077 2.83677 3.33980 3.40912 3.41762 3.67432 3.88770 4.17848 4.45832 4.57459 5.01836 5.02364 5.36087 5.45605 5.55795 5.64174 5.76276 6.02764 6.12436 6.27298 6.37029 6.52420 6.72868 6.77924 6.93083 7.30403 7.63841 7.77921 8.33083 9.15318 9.75285 10.24952 11.24675 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.022027 B = 0.005504 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.886730 B = 5085.550469 C = 5586.567001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.582 5.582 3 C -0.240 4.240 4 H 0.073 0.927 5 C 0.007 3.993 6 N -0.901 5.901 7 Si 0.899 3.101 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.175 3.825 12 C -0.079 4.079 13 C -0.060 4.060 14 C -0.188 4.188 15 C 0.511 3.489 16 F -0.181 7.181 17 F -0.181 7.181 18 F -0.177 7.177 19 C -0.083 4.083 20 C -0.119 4.119 21 C 0.015 3.985 22 Cl -0.043 7.043 23 H 0.019 0.981 24 H 0.061 0.939 25 H -0.003 1.003 26 H 0.254 0.746 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -11.444 3.833 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.301 5.301 3 C -0.370 4.370 4 H 0.091 0.909 5 C -0.192 4.192 6 N -0.545 5.545 7 Si 0.729 3.271 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.047 3.953 12 C -0.084 4.084 13 C -0.080 4.080 14 C -0.190 4.190 15 C 0.457 3.543 16 F -0.163 7.163 17 F -0.162 7.162 18 F -0.158 7.158 19 C -0.102 4.102 20 C -0.138 4.138 21 C -0.013 4.013 22 Cl -0.014 7.014 23 H 0.038 0.962 24 H 0.079 0.921 25 H 0.015 0.985 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.566 -11.156 3.803 12.314 hybrid contribution 0.149 0.969 0.397 1.057 sum 3.715 -10.187 4.200 11.628 Atomic orbital electron populations 1.20852 0.82087 0.97462 0.98031 1.44214 1.02039 1.00171 1.83666 1.19252 0.99809 0.84952 1.32996 0.90913 1.25074 0.97764 0.98674 0.97723 1.70043 1.18919 1.27738 1.37787 0.86331 0.79111 0.84312 0.77346 1.21360 1.21659 1.20351 1.20140 0.97861 0.88953 0.88297 1.21172 0.92196 0.92938 1.02132 1.20695 0.98268 0.95625 0.93388 1.19888 1.00444 1.01225 0.97405 1.18337 0.79582 0.81255 0.75143 1.93198 1.85450 1.43657 1.93960 1.93168 1.95592 1.95509 1.31923 1.93190 1.45291 1.96085 1.81251 1.20592 0.94022 0.96420 0.99165 1.20933 1.00677 0.97819 0.94351 1.20961 0.93985 0.92512 0.93887 1.98391 1.62769 1.52108 1.88103 0.96216 0.92071 0.98489 0.93600 0.91438 0.93095 0.84847 0.84937 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 9.03 59.85 0.54 4.33 16 2 N -0.58 -13.76 2.90 -182.50 -0.53 -14.29 16 3 C -0.24 -6.15 7.76 -15.06 -0.12 -6.26 16 4 H 0.07 1.84 7.23 -52.49 -0.38 1.46 16 5 C 0.01 0.18 5.09 -17.43 -0.09 0.09 16 6 N -0.90 -25.41 10.75 55.49 0.60 -24.81 16 7 Si 0.90 21.37 29.57 -169.99 -5.03 16.35 16 8 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.17 3.40 5.40 -5.20 -0.03 3.37 16 12 C -0.08 -1.46 5.46 -104.59 -0.57 -2.03 16 13 C -0.06 -1.01 9.02 -39.59 -0.36 -1.36 16 14 C -0.19 -2.92 5.45 -104.62 -0.57 -3.49 16 15 C 0.51 7.32 3.36 36.01 0.12 7.44 16 16 F -0.18 -2.49 17.30 2.25 0.04 -2.45 16 17 F -0.18 -2.55 16.47 2.25 0.04 -2.51 16 18 F -0.18 -2.65 16.46 2.25 0.04 -2.61 16 19 C -0.08 -1.21 9.40 -39.59 -0.37 -1.58 16 20 C -0.12 -1.86 9.83 -39.55 -0.39 -2.24 16 21 C 0.01 0.27 6.31 -39.50 -0.25 0.02 16 22 Cl -0.04 -0.81 25.05 -51.86 -1.30 -2.11 16 23 H 0.02 0.50 7.78 -51.93 -0.40 0.10 16 24 H 0.06 1.57 6.83 -51.93 -0.35 1.22 16 25 H 0.00 -0.07 7.99 -51.93 -0.41 -0.48 16 26 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.07 1.28 7.18 -51.93 -0.37 0.91 16 28 H 0.05 0.88 7.86 -51.93 -0.41 0.47 16 29 H 0.13 2.05 7.58 -52.49 -0.40 1.65 16 30 H 0.13 1.58 7.61 -52.49 -0.40 1.18 16 31 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 292.37 15.07 4.41 4.41 Total: -1.00 -27.79 292.37 -6.51 -34.30 By element: Atomic # 1 Polarization: -1.87 SS G_CDS: -2.69 Total: -4.55 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.08 Total: -1.73 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.07 Total: -39.10 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 0.11 Total: -7.57 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.30 Total: -2.11 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.79 -6.51 -34.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158169042.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.136 kcal (2) G-P(sol) polarization free energy of solvation -27.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds