Wall clock time and date at job start Tue Mar 31 2020 06:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36933 * 119.99804 * 2 1 4 4 H 1.08002 * 119.99433 * 205.11392 * 3 2 1 5 5 C 1.38808 * 120.00171 * 25.10713 * 3 2 1 6 6 N 1.31612 * 120.00193 * 10.37634 * 5 3 2 7 7 Si 1.86801 * 119.99838 * 190.37205 * 5 3 2 8 8 H 1.48504 * 109.47134 * 90.00477 * 7 5 3 9 9 H 1.48511 * 109.47074 * 210.00188 * 7 5 3 10 10 H 1.48501 * 109.47267 * 330.00105 * 7 5 3 11 11 C 1.46496 * 119.99749 * 179.97438 * 2 1 3 12 12 C 1.50694 * 109.47569 * 275.36150 * 11 2 1 13 13 C 1.38237 * 120.00699 * 99.73287 * 12 11 2 14 14 C 1.38221 * 120.01118 * 180.02562 * 13 12 11 15 15 C 1.50701 * 119.98322 * 179.97438 * 14 13 12 16 16 F 1.39896 * 109.47790 * 89.99977 * 15 14 13 17 17 F 1.39907 * 109.46935 * 209.99926 * 15 14 13 18 18 F 1.39894 * 109.47039 * 329.99395 * 15 14 13 19 19 C 1.38262 * 120.02843 * 359.70090 * 14 13 12 20 20 C 1.38190 * 120.01234 * 0.55345 * 19 14 13 21 21 C 1.38332 * 120.00625 * 279.71770 * 12 11 2 22 22 Cl 1.73601 * 120.01414 * 359.97438 * 21 12 11 23 23 H 1.08996 * 109.47507 * 266.50717 * 1 2 3 24 24 H 1.09001 * 109.46739 * 26.51513 * 1 2 3 25 25 H 1.09007 * 109.47056 * 146.50552 * 1 2 3 26 26 H 0.97006 * 120.00478 * 179.97438 * 6 5 3 27 27 H 1.09000 * 109.46865 * 155.35880 * 11 2 1 28 28 H 1.09006 * 109.47240 * 35.36733 * 11 2 1 29 29 H 1.07992 * 119.99279 * 359.97438 * 13 12 11 30 30 H 1.07999 * 119.99708 * 180.29792 * 19 14 13 31 31 H 1.07998 * 120.00867 * 179.74315 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1531 1.2300 -0.3970 5 6 1.5540 2.3312 0.5101 6 7 0.4220 2.2436 1.1756 7 14 2.3592 3.9969 0.2519 8 1 1.8584 4.5985 -1.0101 9 1 2.0271 4.8893 1.3916 10 1 3.8322 3.8272 0.1690 11 6 2.1975 -1.2687 0.0006 12 6 2.3337 -1.7696 1.4153 13 6 1.4797 -2.7488 1.8872 14 6 1.6043 -3.2079 3.1850 15 6 0.6725 -4.2751 3.6990 16 9 1.2240 -5.5361 3.4483 17 9 0.4906 -4.1112 5.0765 18 9 -0.5620 -4.1685 3.0497 19 6 2.5869 -2.6925 4.0100 20 6 3.4378 -1.7099 3.5410 21 6 3.3136 -1.2498 2.2419 22 17 4.3871 -0.0207 1.6496 23 1 -0.3634 -0.0626 1.0257 24 1 -0.3633 0.9196 -0.4588 25 1 -0.3633 -0.8571 -0.5672 26 1 0.0058 3.0440 1.5324 27 1 3.1881 -1.1165 -0.4280 28 1 1.6534 -2.0027 -0.5940 29 1 0.7146 -3.1546 1.2421 30 1 2.6868 -3.0551 5.0224 31 1 4.2026 -1.3044 4.1867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158169042.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:32 Heat of formation + Delta-G solvation = -122.776900 kcal Electronic energy + Delta-G solvation = -21584.644554 eV Core-core repulsion = 17670.206250 eV Total energy + Delta-G solvation = -3914.438304 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.17549 -48.69062 -48.63241 -40.56689 -37.44801 -37.21745 -33.95655 -32.62105 -31.95676 -28.09786 -27.42235 -26.90767 -23.85322 -23.33296 -21.94240 -19.50547 -19.40949 -19.05925 -18.67959 -17.61924 -16.82673 -16.61834 -15.72397 -15.65732 -15.49616 -15.41143 -15.09994 -14.97555 -14.88611 -14.79519 -14.58878 -14.16088 -13.99856 -13.64880 -13.16003 -12.89326 -12.74497 -12.58990 -12.44927 -12.38860 -12.13756 -11.99751 -11.81831 -11.49253 -10.52601 -10.00359 -9.75591 -8.73871 -7.78829 -5.23453 -0.17570 0.22924 1.29653 1.45603 1.47822 1.53966 1.64952 2.35011 2.56507 2.70676 3.01228 3.39865 3.42864 3.76957 3.82115 3.85396 4.13470 4.30471 4.47039 4.62553 4.83260 4.91911 4.94387 5.03698 5.11570 5.36248 5.38516 5.63258 5.69506 5.77687 6.39649 7.20629 7.88401 8.33448 9.26571 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.022027 B = 0.005504 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.886730 B = 5085.550469 C = 5586.567001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.600 5.600 3 C -0.227 4.227 4 H 0.074 0.926 5 C -0.044 4.044 6 N -0.936 5.936 7 Si 0.945 3.055 8 H -0.287 1.287 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.176 3.824 12 C -0.098 4.098 13 C -0.062 4.062 14 C -0.193 4.193 15 C 0.519 3.481 16 F -0.175 7.175 17 F -0.177 7.177 18 F -0.181 7.181 19 C -0.068 4.068 20 C -0.120 4.120 21 C -0.003 4.003 22 Cl -0.056 7.056 23 H -0.008 1.008 24 H 0.032 0.968 25 H 0.028 0.972 26 H 0.244 0.756 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.166 0.834 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -13.061 4.594 14.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.320 5.320 3 C -0.358 4.358 4 H 0.091 0.909 5 C -0.239 4.239 6 N -0.583 5.583 7 Si 0.775 3.225 8 H -0.214 1.214 9 H -0.227 1.227 10 H -0.195 1.195 11 C 0.050 3.950 12 C -0.102 4.102 13 C -0.081 4.081 14 C -0.195 4.195 15 C 0.465 3.535 16 F -0.157 7.157 17 F -0.158 7.158 18 F -0.162 7.162 19 C -0.087 4.087 20 C -0.139 4.139 21 C -0.030 4.030 22 Cl -0.027 7.027 23 H 0.010 0.990 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.163 0.837 30 H 0.183 0.817 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.384 -12.821 4.564 14.298 hybrid contribution -0.024 1.234 0.199 1.250 sum 4.360 -11.587 4.762 13.265 Atomic orbital electron populations 1.20557 0.82540 0.97252 0.96501 1.44260 1.02045 1.01130 1.84614 1.19389 0.99302 0.85874 1.31213 0.90862 1.25590 0.98519 1.01119 0.98696 1.70188 1.20508 1.27472 1.40157 0.85578 0.78779 0.81502 0.76613 1.21446 1.22699 1.19461 1.20163 0.97726 0.87706 0.89446 1.21031 0.93491 0.94555 1.01155 1.20836 0.97856 0.95168 0.94255 1.20077 1.00820 1.01430 0.97162 1.18093 0.79137 0.81083 0.75174 1.93215 1.85333 1.43178 1.93939 1.93181 1.95545 1.95501 1.31570 1.93189 1.45545 1.96108 1.81383 1.21015 0.92435 0.94942 1.00298 1.21255 1.01313 0.97696 0.93614 1.21253 0.94269 0.92425 0.95094 1.98381 1.63021 1.52866 1.88393 0.98952 0.94933 0.95348 0.94646 0.91323 0.90852 0.83749 0.81698 0.82311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.36 9.03 127.77 1.15 9.51 16 2 N -0.60 -28.10 2.90 -731.31 -2.12 -30.23 16 3 C -0.23 -11.61 7.76 84.03 0.65 -10.96 16 4 H 0.07 3.67 7.23 -2.91 -0.02 3.65 16 5 C -0.04 -2.40 5.09 84.86 0.43 -1.97 16 6 N -0.94 -54.07 10.75 21.65 0.23 -53.84 16 7 Si 0.95 44.39 29.57 68.60 2.03 46.42 16 8 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 9 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 C 0.18 6.60 5.40 85.63 0.46 7.07 16 12 C -0.10 -3.47 5.46 -19.84 -0.11 -3.58 16 13 C -0.06 -1.94 9.02 22.27 0.20 -1.73 16 14 C -0.19 -5.44 5.45 -19.86 -0.11 -5.55 16 15 C 0.52 13.35 3.36 71.24 0.24 13.59 16 16 F -0.18 -4.28 17.30 44.97 0.78 -3.50 16 17 F -0.18 -4.41 16.47 44.97 0.74 -3.67 16 18 F -0.18 -5.00 16.46 44.97 0.74 -4.26 16 19 C -0.07 -1.75 9.40 22.26 0.21 -1.54 16 20 C -0.12 -3.42 9.83 22.29 0.22 -3.20 16 21 C 0.00 -0.09 6.31 22.33 0.14 0.05 16 22 Cl -0.06 -2.05 25.05 -2.72 -0.07 -2.11 16 23 H -0.01 -0.41 7.78 -2.39 -0.02 -0.43 16 24 H 0.03 1.69 6.83 -2.39 -0.02 1.67 16 25 H 0.03 1.13 7.99 -2.38 -0.02 1.11 16 26 H 0.24 13.97 8.31 -92.70 -0.77 13.19 16 27 H 0.07 2.53 7.18 -2.39 -0.02 2.52 16 28 H 0.07 2.39 7.86 -2.38 -0.02 2.37 16 29 H 0.14 4.11 7.58 -2.91 -0.02 4.09 16 30 H 0.17 3.16 7.61 -2.91 -0.02 3.14 16 31 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -59.30 292.37 6.99 -52.30 By element: Atomic # 1 Polarization: -3.97 SS G_CDS: 1.17 Total: -2.79 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 3.49 Total: 1.68 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -1.89 Total: -84.06 kcal Atomic # 9 Polarization: -13.69 SS G_CDS: 2.26 Total: -11.44 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.07 Total: -2.11 kcal Total: -59.30 6.99 -52.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158169042.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.474 kcal (2) G-P(sol) polarization free energy of solvation -59.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds