Wall clock time and date at job start Tue Mar 31 2020 06:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36929 * 120.00305 * 2 1 4 4 H 1.08005 * 120.00605 * 202.37952 * 3 2 1 5 5 C 1.38815 * 119.99919 * 22.37821 * 3 2 1 6 6 N 1.31613 * 120.00345 * 11.32593 * 5 3 2 7 7 Si 1.86808 * 119.99751 * 191.32772 * 5 3 2 8 8 H 1.48497 * 109.47369 * 90.00261 * 7 5 3 9 9 H 1.48505 * 109.46733 * 209.99878 * 7 5 3 10 10 H 1.48493 * 109.47351 * 329.99755 * 7 5 3 11 11 C 1.46503 * 119.99705 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47131 * 269.99773 * 11 2 1 13 13 C 1.38261 * 119.98580 * 270.30028 * 12 11 2 14 14 C 1.38189 * 120.01195 * 180.25323 * 13 12 11 15 15 C 1.38374 * 119.98782 * 359.47025 * 14 13 12 16 16 Cl 1.73600 * 120.01590 * 180.23144 * 15 14 13 17 17 C 1.38335 * 119.96980 * 0.24948 * 15 14 13 18 18 C 1.50702 * 120.00023 * 180.02562 * 17 15 14 19 19 F 1.39908 * 109.46521 * 180.02562 * 18 17 15 20 20 F 1.39899 * 109.47505 * 300.00114 * 18 17 15 21 21 F 1.39903 * 109.47409 * 60.00854 * 18 17 15 22 22 C 1.38217 * 119.98467 * 89.99914 * 12 11 2 23 23 H 1.09005 * 109.46919 * 274.20561 * 1 2 3 24 24 H 1.09003 * 109.47219 * 34.19943 * 1 2 3 25 25 H 1.08994 * 109.47724 * 154.20265 * 1 2 3 26 26 H 0.96998 * 120.00526 * 179.97438 * 6 5 3 27 27 H 1.08999 * 109.47197 * 149.99671 * 11 2 1 28 28 H 1.08996 * 109.47309 * 29.99711 * 11 2 1 29 29 H 1.08001 * 119.99780 * 359.97434 * 13 12 11 30 30 H 1.08003 * 120.00779 * 179.74324 * 14 13 12 31 31 H 1.07994 * 119.99637 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2211 -0.3561 5 6 1.5341 2.3427 0.4577 6 7 0.3846 2.2688 1.0944 7 14 2.3372 4.0046 0.1698 8 1 1.8682 4.5637 -1.1235 9 1 1.9690 4.9297 1.2716 10 1 3.8127 3.8416 0.1327 11 6 2.1975 -1.2688 -0.0006 12 6 2.4487 -1.7045 1.4201 13 6 3.5980 -1.3004 2.0738 14 6 3.8314 -1.7038 3.3747 15 6 2.9093 -2.5034 4.0268 16 17 3.1990 -3.0057 5.6631 17 6 1.7568 -2.9026 3.3741 18 6 0.7519 -3.7728 4.0839 19 9 -0.3199 -4.0423 3.2260 20 9 1.3600 -4.9749 4.4614 21 9 0.2826 -3.1097 5.2229 22 6 1.5270 -2.5027 2.0710 23 1 -0.3633 0.0754 1.0250 24 1 -0.3634 0.8500 -0.5776 25 1 -0.3634 -0.9252 -0.4472 26 1 -0.0454 3.0772 1.4146 27 1 3.1498 -1.1383 -0.5144 28 1 1.6084 -2.0282 -0.5147 29 1 4.3157 -0.6730 1.5661 30 1 4.7312 -1.3916 3.8839 31 1 0.6273 -2.8143 1.5614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158226816.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:26 Heat of formation + Delta-G solvation = -109.104918 kcal Electronic energy + Delta-G solvation = -21533.897282 eV Core-core repulsion = 17620.051840 eV Total energy + Delta-G solvation = -3913.845443 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.95396 -47.48572 -47.39596 -39.28444 -36.56953 -35.54124 -32.30297 -31.62066 -30.20127 -26.41120 -25.73889 -25.69468 -22.37086 -21.93521 -20.53979 -18.28901 -18.22588 -17.87737 -16.86421 -16.28372 -15.24529 -15.03077 -14.45996 -14.38454 -14.14204 -13.87992 -13.80521 -13.68909 -13.57616 -13.43392 -13.27639 -13.04247 -12.48803 -12.18584 -11.69888 -11.34246 -11.27366 -11.02673 -10.94779 -10.75165 -10.68935 -10.40406 -10.12920 -10.02963 -8.99746 -8.70257 -8.38038 -6.96719 -5.89119 -3.33073 1.11874 1.42888 2.12315 2.86205 3.29181 3.35331 3.37381 3.69797 3.89546 4.20532 4.37946 4.61527 4.95300 5.21236 5.36050 5.46267 5.51702 5.58881 5.68250 5.89957 6.16294 6.22177 6.38295 6.46828 6.63492 6.91933 6.98443 7.25618 7.59555 7.67168 8.21607 9.05221 9.66767 10.15060 11.14658 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.020921 B = 0.005146 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.031628 B = 5440.216544 C = 5878.888889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.586 5.586 3 C -0.259 4.259 4 H 0.073 0.927 5 C 0.006 3.994 6 N -0.898 5.898 7 Si 0.908 3.092 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.177 3.823 12 C -0.076 4.076 13 C -0.061 4.061 14 C -0.112 4.112 15 C -0.013 4.013 16 Cl -0.069 7.069 17 C -0.181 4.181 18 C 0.510 3.490 19 F -0.177 7.177 20 F -0.177 7.177 21 F -0.173 7.173 22 C -0.058 4.058 23 H 0.030 0.970 24 H 0.050 0.950 25 H 0.001 0.999 26 H 0.256 0.744 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.956 -11.184 3.926 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.388 4.388 4 H 0.090 0.910 5 C -0.194 4.194 6 N -0.541 5.541 7 Si 0.737 3.263 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.203 1.203 11 C 0.050 3.950 12 C -0.081 4.081 13 C -0.081 4.081 14 C -0.130 4.130 15 C -0.041 4.041 16 Cl -0.040 7.040 17 C -0.183 4.183 18 C 0.456 3.544 19 F -0.158 7.158 20 F -0.158 7.158 21 F -0.155 7.155 22 C -0.077 4.077 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.019 0.981 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.789 -11.057 4.104 12.388 hybrid contribution 0.112 0.922 0.545 1.077 sum 3.900 -10.135 4.649 11.813 Atomic orbital electron populations 1.20900 0.81958 0.96064 0.99620 1.44234 1.02169 1.00249 1.83949 1.19263 0.98543 0.84913 1.36113 0.90957 1.25125 0.97588 0.98857 0.97807 1.70062 1.17511 1.27556 1.38968 0.86212 0.78889 0.83697 0.77483 1.21256 1.21608 1.20316 1.20089 0.97268 0.88949 0.88693 1.21407 0.92204 0.92491 1.02005 1.21204 0.97243 0.96430 0.93205 1.20982 0.98950 0.97832 0.95265 1.20376 0.95905 1.01275 0.86530 1.98366 1.96000 1.90085 1.19584 1.19716 0.95889 1.05752 0.96960 1.18199 0.80305 0.78764 0.77110 1.93160 1.58233 1.94250 1.70201 1.93200 1.83052 1.47768 1.91800 1.93222 1.89438 1.80519 1.52286 1.20825 0.99464 0.95908 0.91488 0.95132 0.93163 0.98092 0.93391 0.92068 0.92775 0.84532 0.84665 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.70 9.01 59.85 0.54 4.24 16 2 N -0.59 -13.58 2.91 -182.50 -0.53 -14.11 16 3 C -0.26 -6.56 9.67 -15.06 -0.15 -6.71 16 4 H 0.07 1.76 7.84 -52.48 -0.41 1.35 16 5 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 6 N -0.90 -25.09 10.59 55.49 0.59 -24.50 16 7 Si 0.91 20.82 29.57 -169.99 -5.03 15.80 16 8 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 C 0.18 3.25 5.83 -5.19 -0.03 3.22 16 12 C -0.08 -1.34 5.46 -104.62 -0.57 -1.91 16 13 C -0.06 -1.01 9.70 -39.59 -0.38 -1.39 16 14 C -0.11 -1.70 9.83 -39.55 -0.39 -2.09 16 15 C -0.01 -0.21 6.25 -39.50 -0.25 -0.46 16 16 Cl -0.07 -1.01 26.60 -51.86 -1.38 -2.39 16 17 C -0.18 -3.01 5.37 -104.59 -0.56 -3.57 16 18 C 0.51 8.11 2.86 36.01 0.10 8.21 16 19 F -0.18 -2.75 15.97 2.25 0.04 -2.72 16 20 F -0.18 -2.68 16.39 2.25 0.04 -2.64 16 21 F -0.17 -2.88 16.39 2.25 0.04 -2.84 16 22 C -0.06 -0.98 9.08 -39.59 -0.36 -1.34 16 23 H 0.03 0.78 7.42 -51.93 -0.39 0.40 16 24 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 25 H 0.00 0.01 7.84 -51.93 -0.41 -0.40 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.06 1.05 7.98 -51.93 -0.41 0.63 16 28 H 0.05 0.89 7.81 -51.93 -0.41 0.48 16 29 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.14 1.72 8.06 -52.48 -0.42 1.29 16 31 H 0.14 2.20 7.16 -52.49 -0.38 1.82 16 LS Contribution 295.62 15.07 4.45 4.45 Total: -1.00 -27.57 295.62 -6.67 -34.24 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -2.75 Total: -3.55 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.14 Total: -1.73 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.06 Total: -38.61 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 0.11 Total: -8.20 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.80 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.38 Total: -2.39 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.57 -6.67 -34.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158226816.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.866 kcal (2) G-P(sol) polarization free energy of solvation -27.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds