Wall clock time and date at job start Tue Mar 31 2020 06:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36929 * 120.00305 * 2 1 4 4 H 1.08005 * 120.00605 * 202.37952 * 3 2 1 5 5 C 1.38815 * 119.99919 * 22.37821 * 3 2 1 6 6 N 1.31613 * 120.00345 * 11.32593 * 5 3 2 7 7 Si 1.86808 * 119.99751 * 191.32772 * 5 3 2 8 8 H 1.48497 * 109.47369 * 90.00261 * 7 5 3 9 9 H 1.48505 * 109.46733 * 209.99878 * 7 5 3 10 10 H 1.48493 * 109.47351 * 329.99755 * 7 5 3 11 11 C 1.46503 * 119.99705 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47131 * 269.99773 * 11 2 1 13 13 C 1.38261 * 119.98580 * 270.30028 * 12 11 2 14 14 C 1.38189 * 120.01195 * 180.25323 * 13 12 11 15 15 C 1.38374 * 119.98782 * 359.47025 * 14 13 12 16 16 Cl 1.73600 * 120.01590 * 180.23144 * 15 14 13 17 17 C 1.38335 * 119.96980 * 0.24948 * 15 14 13 18 18 C 1.50702 * 120.00023 * 180.02562 * 17 15 14 19 19 F 1.39908 * 109.46521 * 180.02562 * 18 17 15 20 20 F 1.39899 * 109.47505 * 300.00114 * 18 17 15 21 21 F 1.39903 * 109.47409 * 60.00854 * 18 17 15 22 22 C 1.38217 * 119.98467 * 89.99914 * 12 11 2 23 23 H 1.09005 * 109.46919 * 274.20561 * 1 2 3 24 24 H 1.09003 * 109.47219 * 34.19943 * 1 2 3 25 25 H 1.08994 * 109.47724 * 154.20265 * 1 2 3 26 26 H 0.96998 * 120.00526 * 179.97438 * 6 5 3 27 27 H 1.08999 * 109.47197 * 149.99671 * 11 2 1 28 28 H 1.08996 * 109.47309 * 29.99711 * 11 2 1 29 29 H 1.08001 * 119.99780 * 359.97434 * 13 12 11 30 30 H 1.08003 * 120.00779 * 179.74324 * 14 13 12 31 31 H 1.07994 * 119.99637 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2211 -0.3561 5 6 1.5341 2.3427 0.4577 6 7 0.3846 2.2688 1.0944 7 14 2.3372 4.0046 0.1698 8 1 1.8682 4.5637 -1.1235 9 1 1.9690 4.9297 1.2716 10 1 3.8127 3.8416 0.1327 11 6 2.1975 -1.2688 -0.0006 12 6 2.4487 -1.7045 1.4201 13 6 3.5980 -1.3004 2.0738 14 6 3.8314 -1.7038 3.3747 15 6 2.9093 -2.5034 4.0268 16 17 3.1990 -3.0057 5.6631 17 6 1.7568 -2.9026 3.3741 18 6 0.7519 -3.7728 4.0839 19 9 -0.3199 -4.0423 3.2260 20 9 1.3600 -4.9749 4.4614 21 9 0.2826 -3.1097 5.2229 22 6 1.5270 -2.5027 2.0710 23 1 -0.3633 0.0754 1.0250 24 1 -0.3634 0.8500 -0.5776 25 1 -0.3634 -0.9252 -0.4472 26 1 -0.0454 3.0772 1.4146 27 1 3.1498 -1.1383 -0.5144 28 1 1.6084 -2.0282 -0.5147 29 1 4.3157 -0.6730 1.5661 30 1 4.7312 -1.3916 3.8839 31 1 0.6273 -2.8143 1.5614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158226816.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:26 Heat of formation + Delta-G solvation = -121.887289 kcal Electronic energy + Delta-G solvation = -21534.451567 eV Core-core repulsion = 17620.051840 eV Total energy + Delta-G solvation = -3914.399728 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.22055 -48.74562 -48.66875 -40.59738 -37.90102 -37.14823 -33.91188 -32.98050 -31.79266 -28.10673 -27.42153 -27.02769 -23.83029 -23.40059 -22.00858 -19.55695 -19.49624 -19.20894 -18.68411 -17.56034 -16.83808 -16.57963 -15.76202 -15.67455 -15.51223 -15.44838 -15.12977 -15.05899 -14.98359 -14.84323 -14.70609 -14.39580 -13.94022 -13.66328 -13.20488 -12.91354 -12.78764 -12.62591 -12.45564 -12.38971 -12.09356 -11.94239 -11.92321 -11.78288 -10.63876 -10.26951 -9.70747 -8.82572 -7.81993 -5.29260 -0.18155 0.14284 0.86928 1.49034 1.50654 1.58117 1.58817 2.36446 2.55435 2.62076 2.93664 3.33361 3.35938 3.70977 3.84947 3.98475 4.18140 4.27037 4.36747 4.61389 4.83589 4.86330 4.93385 5.02465 5.11937 5.35956 5.57175 5.65176 5.69430 5.75357 6.32586 7.14804 7.85298 8.29000 9.21062 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.020921 B = 0.005146 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.031628 B = 5440.216544 C = 5878.888889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.604 5.604 3 C -0.255 4.255 4 H 0.082 0.918 5 C -0.051 4.051 6 N -0.936 5.936 7 Si 0.963 3.037 8 H -0.288 1.288 9 H -0.302 1.302 10 H -0.263 1.263 11 C 0.177 3.823 12 C -0.089 4.089 13 C -0.063 4.063 14 C -0.109 4.109 15 C -0.016 4.016 16 Cl -0.056 7.056 17 C -0.192 4.192 18 C 0.513 3.487 19 F -0.176 7.176 20 F -0.171 7.171 21 F -0.178 7.178 22 C -0.063 4.063 23 H -0.001 1.001 24 H 0.020 0.980 25 H 0.033 0.967 26 H 0.246 0.754 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.149 0.851 30 H 0.163 0.837 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.539 -12.172 4.024 13.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.325 5.325 3 C -0.385 4.385 4 H 0.100 0.900 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.792 3.208 8 H -0.215 1.215 9 H -0.230 1.230 10 H -0.187 1.187 11 C 0.051 3.949 12 C -0.093 4.093 13 C -0.083 4.083 14 C -0.127 4.127 15 C -0.043 4.043 16 Cl -0.026 7.026 17 C -0.195 4.195 18 C 0.459 3.541 19 F -0.157 7.157 20 F -0.153 7.153 21 F -0.160 7.160 22 C -0.082 4.082 23 H 0.018 0.982 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.166 0.834 30 H 0.181 0.819 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.420 -12.100 4.205 13.909 hybrid contribution -0.298 1.014 0.559 1.196 sum 5.121 -11.086 4.764 13.108 Atomic orbital electron populations 1.20599 0.82694 0.96325 0.97477 1.44306 1.02073 1.01372 1.84790 1.19593 0.98580 0.85905 1.34431 0.90045 1.25784 0.98341 1.01797 0.98703 1.70237 1.19247 1.27341 1.41453 0.85316 0.78816 0.80153 0.76476 1.21550 1.22963 1.18717 1.20204 0.97769 0.87421 0.89491 1.21321 0.93168 0.93575 1.01229 1.21448 0.97117 0.95970 0.93717 1.21278 0.99632 0.96922 0.94894 1.20619 0.95731 1.00763 0.87187 1.98375 1.95888 1.89898 1.18487 1.19849 0.96385 1.06132 0.97102 1.18112 0.80229 0.78826 0.76916 1.93163 1.58167 1.94228 1.70130 1.93209 1.82944 1.47378 1.91738 1.93213 1.89505 1.80693 1.52567 1.20934 0.99536 0.95887 0.91806 0.98220 0.96124 0.94816 0.94499 0.90611 0.90699 0.83372 0.81915 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.13 9.01 127.77 1.15 9.28 16 2 N -0.60 -27.41 2.91 -731.30 -2.13 -29.54 16 3 C -0.25 -12.72 9.67 84.04 0.81 -11.90 16 4 H 0.08 3.82 7.84 -2.91 -0.02 3.80 16 5 C -0.05 -2.70 5.13 84.86 0.44 -2.26 16 6 N -0.94 -53.67 10.59 21.65 0.23 -53.44 16 7 Si 0.96 42.99 29.57 68.60 2.03 45.02 16 8 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 9 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 C 0.18 6.11 5.83 85.63 0.50 6.61 16 12 C -0.09 -2.96 5.46 -19.86 -0.11 -3.07 16 13 C -0.06 -1.93 9.70 22.26 0.22 -1.71 16 14 C -0.11 -3.02 9.83 22.29 0.22 -2.80 16 15 C -0.02 -0.46 6.25 22.33 0.14 -0.33 16 16 Cl -0.06 -1.50 26.60 -2.72 -0.07 -1.57 16 17 C -0.19 -6.07 5.37 -19.84 -0.11 -6.18 16 18 C 0.51 15.53 2.86 71.24 0.20 15.73 16 19 F -0.18 -5.23 15.97 44.97 0.72 -4.51 16 20 F -0.17 -4.88 16.39 44.97 0.74 -4.14 16 21 F -0.18 -5.70 16.39 44.97 0.74 -4.96 16 22 C -0.06 -2.03 9.08 22.26 0.20 -1.82 16 23 H 0.00 -0.03 7.42 -2.38 -0.02 -0.05 16 24 H 0.02 1.04 7.19 -2.39 -0.02 1.03 16 25 H 0.03 1.30 7.84 -2.39 -0.02 1.29 16 26 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 27 H 0.08 2.38 7.98 -2.39 -0.02 2.37 16 28 H 0.07 2.25 7.81 -2.39 -0.02 2.23 16 29 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 30 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.14 4.37 7.16 -2.91 -0.02 4.35 16 Total: -1.00 -58.48 295.62 7.08 -51.39 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: 1.17 Total: 0.20 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 3.66 Total: 1.54 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -1.90 Total: -82.98 kcal Atomic # 9 Polarization: -15.80 SS G_CDS: 2.19 Total: -13.61 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.07 Total: -1.57 kcal Total: -58.48 7.08 -51.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158226816.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.493 kcal (2) G-P(sol) polarization free energy of solvation -58.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds