Wall clock time and date at job start Tue Mar 31 2020 07:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48493 * 109.47037 * 239.99493 * 3 2 1 5 5 H 1.48501 * 109.46667 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99441 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21653 * 120.00225 * 359.72103 * 12 11 10 14 14 C 1.46936 * 119.99738 * 179.72426 * 12 11 10 15 15 C 1.33699 * 124.66125 * 179.97438 * 14 12 11 16 16 C 1.40396 * 115.58589 * 179.97438 * 15 14 12 17 17 C 1.41588 * 128.82231 * 180.02562 * 16 15 14 18 18 C 1.35863 * 120.53448 * 180.02562 * 17 16 15 19 19 C 1.39204 * 120.67037 * 359.89738 * 18 17 16 20 20 F 1.35092 * 119.94091 * 180.02562 * 19 18 17 21 21 C 1.37636 * 120.12569 * 0.05942 * 19 18 17 22 22 C 1.39847 * 120.16315 * 0.02562 * 21 19 18 23 23 S 1.75481 * 124.66120 * 359.69770 * 14 12 11 24 24 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 26 26 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 30 30 H 1.08002 * 122.20727 * 0.02577 * 15 14 12 31 31 H 1.08010 * 119.73439 * 359.97438 * 17 16 15 32 32 H 1.08009 * 119.66545 * 179.90991 * 18 17 16 33 33 H 1.08001 * 119.92412 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4035 -6.0979 0.0059 14 6 1.4524 -7.3704 0.0110 15 6 2.0246 -8.5788 0.0162 16 6 1.1397 -9.6687 0.0215 17 6 1.4366 -11.0531 0.0281 18 6 0.4372 -11.9734 0.0321 19 6 -0.8962 -11.5736 0.0318 20 9 -1.8783 -12.5012 0.0363 21 6 -1.2160 -10.2349 0.0263 22 6 -0.2033 -9.2705 0.0204 23 16 -0.2966 -7.5131 0.0186 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8906 28 1 2.8722 -3.6042 -0.8894 29 1 0.5430 -4.9308 0.0000 30 1 3.0969 -8.7079 0.0172 31 1 2.4660 -11.3802 0.0292 32 1 0.6796 -13.0259 0.0356 33 1 -2.2516 -9.9284 0.0257 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160962052.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:44 Heat of formation + Delta-G solvation = -48.935458 kcal Electronic energy + Delta-G solvation = -19156.730062 eV Core-core repulsion = 15801.766999 eV Total energy + Delta-G solvation = -3354.963063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.31100 -40.10708 -39.20158 -35.42405 -34.84730 -32.92772 -31.64522 -30.29783 -29.02988 -25.45792 -24.31087 -23.65283 -21.72986 -20.91095 -20.14758 -18.84352 -17.73532 -16.71729 -16.33638 -16.22445 -16.02425 -15.62505 -15.17599 -15.17148 -14.53153 -14.26701 -13.92387 -13.88620 -13.44459 -13.25591 -13.08350 -12.71063 -12.31757 -11.70851 -11.28607 -11.28330 -11.04644 -11.00183 -10.69582 -10.40488 -10.19915 -10.07313 -9.61535 -9.32135 -8.86761 -8.62547 -8.42319 -8.11432 -6.12393 -4.15839 -0.05066 0.68493 1.05811 1.55829 1.59974 3.04083 3.29419 3.32526 3.33953 3.34432 3.41172 3.81942 4.18577 4.38167 4.45297 4.57532 4.73212 4.93685 5.09198 5.24623 5.33317 5.47487 5.54406 5.63619 5.83997 5.96251 6.24007 6.25306 6.34211 6.62125 6.71572 7.44672 7.55038 7.77163 7.85064 8.20606 8.37889 8.89511 9.49203 10.99148 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.040667 B = 0.002696 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.354685 B =10384.707755 C =11052.600353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.712 5.712 12 C 0.576 3.424 13 O -0.532 6.532 14 C -0.210 4.210 15 C -0.050 4.050 16 C -0.092 4.092 17 C -0.037 4.037 18 C -0.155 4.155 19 C 0.121 3.879 20 F -0.134 7.134 21 C -0.122 4.122 22 C -0.114 4.114 23 S 0.151 5.849 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.396 0.604 30 H 0.158 0.842 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -23.881 0.067 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.361 5.361 12 C 0.360 3.640 13 O -0.412 6.412 14 C -0.329 4.329 15 C -0.082 4.082 16 C -0.101 4.101 17 C -0.057 4.057 18 C -0.176 4.176 19 C 0.099 3.901 20 F -0.112 7.112 21 C -0.145 4.145 22 C -0.231 4.231 23 S 0.418 5.582 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.230 0.770 30 H 0.176 0.824 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.027 -22.559 0.068 22.761 hybrid contribution 0.759 -0.230 -0.001 0.793 sum -2.268 -22.788 0.066 22.901 Atomic orbital electron populations 1.69940 1.06101 1.27079 1.50090 1.24995 0.94902 0.99436 0.94894 0.86555 0.79511 0.82575 0.78802 1.20084 1.21217 1.20078 1.20983 0.93221 0.90268 1.51745 0.92211 1.19341 0.94185 0.91020 0.98008 1.21852 0.96151 0.80805 1.01265 1.46279 1.10382 1.06513 1.72936 1.17067 0.86933 0.82341 0.77640 1.90808 1.12613 1.86991 1.50739 1.23982 0.97336 0.98351 1.13232 1.20187 1.01673 0.89198 0.97101 1.18271 0.91429 0.94543 1.05867 1.20700 0.99885 0.89853 0.95246 1.20676 0.90734 1.01337 1.04875 1.17429 0.85359 0.85582 1.01758 1.91525 1.61209 1.64806 1.93668 1.20310 0.99428 0.90107 1.04675 1.22753 0.96321 0.98209 1.05834 1.84391 1.01585 0.96745 1.75441 0.92716 0.95819 0.95816 0.92026 0.92021 0.76981 0.82418 0.84059 0.83998 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.53 5.61 -4.04 -0.02 2.51 16 11 N -0.71 -12.64 5.55 -61.54 -0.34 -12.98 16 12 C 0.58 9.99 7.79 -12.74 -0.10 9.89 16 13 O -0.53 -10.80 16.72 5.23 0.09 -10.72 16 14 C -0.21 -2.90 6.32 -37.65 -0.24 -3.14 16 15 C -0.05 -0.60 9.79 -40.36 -0.40 -0.99 16 16 C -0.09 -0.97 5.87 -107.12 -0.63 -1.59 16 17 C -0.04 -0.29 10.02 -39.16 -0.39 -0.68 16 18 C -0.16 -1.15 9.92 -40.07 -0.40 -1.55 16 19 C 0.12 1.08 7.29 -39.44 -0.29 0.79 16 20 F -0.13 -1.23 17.26 2.25 0.04 -1.19 16 21 C -0.12 -1.13 10.05 -39.20 -0.39 -1.53 16 22 C -0.11 -1.22 6.50 -38.29 -0.25 -1.47 16 23 S 0.15 1.74 22.26 -107.50 -2.39 -0.65 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.40 6.29 7.52 -40.82 -0.31 5.99 16 30 H 0.16 1.75 7.96 -52.49 -0.42 1.33 16 31 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 313.01 15.07 4.72 4.72 Total: -1.00 -30.92 313.01 -9.06 -39.97 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -3.23 Total: 0.54 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -3.66 Total: -10.71 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.39 Total: -38.11 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.39 Total: -0.65 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.92 -9.06 -39.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160962052.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.962 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds