Wall clock time and date at job start Tue Mar 31 2020 07:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48493 * 109.47037 * 239.99493 * 3 2 1 5 5 H 1.48501 * 109.46667 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99441 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21653 * 120.00225 * 359.72103 * 12 11 10 14 14 C 1.46936 * 119.99738 * 179.72426 * 12 11 10 15 15 C 1.33699 * 124.66125 * 179.97438 * 14 12 11 16 16 C 1.40396 * 115.58589 * 179.97438 * 15 14 12 17 17 C 1.41588 * 128.82231 * 180.02562 * 16 15 14 18 18 C 1.35863 * 120.53448 * 180.02562 * 17 16 15 19 19 C 1.39204 * 120.67037 * 359.89738 * 18 17 16 20 20 F 1.35092 * 119.94091 * 180.02562 * 19 18 17 21 21 C 1.37636 * 120.12569 * 0.05942 * 19 18 17 22 22 C 1.39847 * 120.16315 * 0.02562 * 21 19 18 23 23 S 1.75481 * 124.66120 * 359.69770 * 14 12 11 24 24 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 26 26 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 30 30 H 1.08002 * 122.20727 * 0.02577 * 15 14 12 31 31 H 1.08010 * 119.73439 * 359.97438 * 17 16 15 32 32 H 1.08009 * 119.66545 * 179.90991 * 18 17 16 33 33 H 1.08001 * 119.92412 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4035 -6.0979 0.0059 14 6 1.4524 -7.3704 0.0110 15 6 2.0246 -8.5788 0.0162 16 6 1.1397 -9.6687 0.0215 17 6 1.4366 -11.0531 0.0281 18 6 0.4372 -11.9734 0.0321 19 6 -0.8962 -11.5736 0.0318 20 9 -1.8783 -12.5012 0.0363 21 6 -1.2160 -10.2349 0.0263 22 6 -0.2033 -9.2705 0.0204 23 16 -0.2966 -7.5131 0.0186 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8906 28 1 2.8722 -3.6042 -0.8894 29 1 0.5430 -4.9308 0.0000 30 1 3.0969 -8.7079 0.0172 31 1 2.4660 -11.3802 0.0292 32 1 0.6796 -13.0259 0.0356 33 1 -2.2516 -9.9284 0.0257 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160962052.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:43 Heat of formation + Delta-G solvation = -67.021362 kcal Electronic energy + Delta-G solvation = -19157.514326 eV Core-core repulsion = 15801.766999 eV Total energy + Delta-G solvation = -3355.747327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.02723 -41.11763 -40.36317 -36.81049 -36.02830 -34.88880 -32.33829 -31.92475 -30.18707 -27.11201 -25.35306 -24.64199 -23.09552 -22.35892 -21.24444 -19.81289 -18.76999 -18.42704 -17.51066 -17.07989 -16.76619 -16.69688 -16.62351 -16.47243 -16.33906 -15.15984 -15.15160 -14.84505 -14.52693 -14.42601 -14.31383 -14.03484 -13.46601 -13.27148 -12.95188 -12.58728 -12.49857 -12.30790 -12.07029 -11.81358 -11.71236 -11.54057 -11.19754 -10.95409 -10.62002 -10.22344 -9.58940 -8.94138 -8.24873 -6.35891 -0.92593 0.01291 0.17739 0.66834 0.69886 1.42042 1.44435 1.52348 1.93136 2.01644 2.42145 2.45418 3.09978 3.12422 3.42128 3.59281 3.86823 3.89264 4.07931 4.36500 4.40138 4.43845 4.55402 4.71065 4.79725 4.85673 4.94342 5.10067 5.11484 5.20470 5.42186 5.53276 5.68225 5.75260 6.12410 6.35936 6.76602 6.97085 7.33567 8.86932 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.040667 B = 0.002696 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.354685 B =10384.707755 C =11052.600353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.021 3.979 10 C 0.140 3.860 11 N -0.712 5.712 12 C 0.580 3.420 13 O -0.568 6.568 14 C -0.247 4.247 15 C -0.027 4.027 16 C -0.111 4.111 17 C -0.026 4.026 18 C -0.149 4.149 19 C 0.126 3.874 20 F -0.134 7.134 21 C -0.134 4.134 22 C -0.116 4.116 23 S 0.149 5.851 24 H 0.266 0.734 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.405 0.595 30 H 0.165 0.835 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -25.850 0.077 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.080 0.920 9 C -0.016 4.016 10 C 0.017 3.983 11 N -0.362 5.362 12 C 0.367 3.633 13 O -0.450 6.450 14 C -0.365 4.365 15 C -0.059 4.059 16 C -0.119 4.119 17 C -0.045 4.045 18 C -0.170 4.170 19 C 0.103 3.897 20 F -0.113 7.113 21 C -0.157 4.157 22 C -0.233 4.233 23 S 0.417 5.583 24 H 0.075 0.925 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.240 0.760 30 H 0.183 0.817 31 H 0.191 0.809 32 H 0.191 0.809 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.636 -24.545 0.077 24.687 hybrid contribution 0.559 0.156 -0.004 0.580 sum -2.077 -24.390 0.074 24.478 Atomic orbital electron populations 1.70053 1.07601 1.28135 1.50830 1.25889 0.95796 1.03169 0.94339 0.85479 0.78277 0.78003 0.79181 1.19270 1.20658 1.19261 1.21418 0.93683 0.91698 1.51789 0.91993 1.19151 0.94246 0.91801 0.96410 1.21371 0.95098 0.81231 1.00623 1.46085 1.10740 1.05869 1.73469 1.17424 0.86642 0.83060 0.76168 1.90773 1.14151 1.87677 1.52390 1.23548 0.98564 0.97034 1.17360 1.20393 1.02291 0.89045 0.94199 1.18405 0.90850 0.95473 1.07168 1.21054 1.01699 0.88383 0.93404 1.21030 0.89709 1.02912 1.03304 1.17643 0.86039 0.85308 1.00710 1.91531 1.61478 1.64739 1.93543 1.20457 0.99825 0.90278 1.05179 1.22844 0.97000 0.97559 1.05926 1.84289 0.99856 0.98164 1.75990 0.92495 0.97328 0.97325 0.92669 0.92664 0.75968 0.81743 0.80919 0.80904 0.82900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.39 13.29 21.45 0.28 -54.10 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -30.48 9.11 25.60 0.23 -30.24 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.08 5.09 29.85 0.15 1.23 16 10 C 0.14 6.04 5.61 86.38 0.48 6.53 16 11 N -0.71 -26.10 5.55 -466.83 -2.59 -28.69 16 12 C 0.58 20.59 7.79 86.52 0.67 21.26 16 13 O -0.57 -23.56 16.72 -4.20 -0.07 -23.63 16 14 C -0.25 -6.83 6.32 23.52 0.15 -6.68 16 15 C -0.03 -0.61 9.79 21.76 0.21 -0.40 16 16 C -0.11 -2.09 5.87 -21.48 -0.13 -2.22 16 17 C -0.03 -0.31 10.02 22.54 0.23 -0.08 16 18 C -0.15 -1.63 9.92 21.95 0.22 -1.41 16 19 C 0.13 1.87 7.29 22.36 0.16 2.03 16 20 F -0.13 -2.12 17.26 44.97 0.78 -1.34 16 21 C -0.13 -2.24 10.05 22.52 0.23 -2.01 16 22 C -0.12 -2.33 6.50 23.11 0.15 -2.18 16 23 S 0.15 3.43 22.26 -56.49 -1.26 2.18 16 24 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 25 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 27 H 0.05 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.05 2.44 8.14 -2.39 -0.02 2.43 16 29 H 0.40 13.37 7.52 -92.71 -0.70 12.67 16 30 H 0.17 3.45 7.96 -2.91 -0.02 3.42 16 31 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 32 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 33 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -66.82 313.01 2.85 -63.96 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.46 Total: 9.50 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 3.22 Total: -13.32 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -2.31 Total: -82.80 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.07 Total: -23.63 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.78 Total: -1.34 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.26 Total: 2.18 kcal Total: -66.82 2.85 -63.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160962052.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.059 kcal (2) G-P(sol) polarization free energy of solvation -66.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds