Wall clock time and date at job start Tue Mar 31 2020 06:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86797 * 120.00340 * 2 1 4 4 H 1.48496 * 109.47430 * 270.00020 * 3 2 1 5 5 H 1.48498 * 109.47118 * 30.00082 * 3 2 1 6 6 H 1.48503 * 109.47136 * 149.99616 * 3 2 1 7 7 C 1.38953 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99998 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00219 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00023 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00369 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47466 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 10 15 15 N 1.30970 * 126.42262 * 89.70973 * 14 13 12 16 16 C 1.35267 * 105.57846 * 179.89415 * 15 14 13 17 17 C 1.48234 * 126.42491 * 180.17127 * 16 15 14 18 18 C 1.39591 * 122.84335 * 179.97438 * 17 16 15 19 19 C 1.33168 * 113.73664 * 179.80878 * 18 17 16 20 20 S 1.75734 * 109.74276 * 0.43984 * 19 18 17 21 21 C 1.34458 * 122.85135 * 0.28863 * 17 16 15 22 22 N 1.30869 * 107.14737 * 0.37539 * 16 15 14 23 23 O 1.21293 * 110.07689 * 359.75980 * 22 16 15 24 24 H 0.97002 * 119.99781 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00141 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.47120 * 59.99760 * 12 10 9 27 27 H 1.08998 * 109.46862 * 300.00562 * 12 10 9 28 28 H 1.09002 * 109.47153 * 59.99773 * 13 12 10 29 29 H 1.09001 * 109.46832 * 299.99964 * 13 12 10 30 30 H 1.07997 * 123.13775 * 0.02982 * 18 17 16 31 31 H 1.08001 * 125.12614 * 180.18235 * 19 18 17 32 32 H 1.07995 * 124.73841 * 359.94633 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 6 2.2378 -6.0259 -0.0004 14 6 1.4843 -7.3310 -0.0003 15 7 1.0913 -8.0021 -1.0541 16 6 0.4632 -9.0991 -0.5728 17 6 -0.1596 -10.1795 -1.3742 18 6 -0.7904 -11.2828 -0.7970 19 6 -1.2902 -12.1400 -1.6852 20 16 -0.9583 -11.5684 -3.3135 21 6 -0.1594 -10.1829 -2.7188 22 7 0.5045 -9.0255 0.7332 23 8 1.0866 -8.0178 1.0752 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3907 -0.0005 26 1 0.6173 -4.9205 -0.8914 27 1 0.6166 -4.9208 0.8885 28 1 2.8639 -5.9682 0.8901 29 1 2.8652 -5.9682 -0.8899 30 1 -0.8692 -11.4262 0.2705 31 1 -1.8161 -13.0513 -1.4416 32 1 0.2839 -9.4156 -3.3361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162030031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:56 Heat of formation + Delta-G solvation = 55.518911 kcal Electronic energy + Delta-G solvation = -19396.009144 eV Core-core repulsion = 16065.495524 eV Total energy + Delta-G solvation = -3330.513620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.50701 -38.55509 -38.39175 -35.71613 -34.38145 -33.70129 -31.39183 -30.82231 -29.99452 -26.27340 -25.69062 -24.12200 -23.03916 -22.03056 -19.44780 -19.23865 -18.16098 -18.02824 -17.78150 -17.40000 -16.11789 -15.68961 -14.98307 -14.69369 -14.11946 -13.98635 -13.77120 -13.65561 -13.18472 -12.96299 -12.77825 -12.63980 -12.22671 -11.97011 -11.70126 -11.55334 -11.29241 -11.16012 -11.08047 -10.83609 -10.42942 -10.28980 -10.17844 -9.58086 -9.24881 -8.62838 -8.51665 -8.04570 -6.47558 -3.88957 0.44583 1.15148 1.23745 1.57947 1.79022 2.82143 2.88977 3.14533 3.24273 3.29797 3.49547 3.80978 4.00828 4.13945 4.62270 4.77385 4.95551 5.09641 5.14752 5.19400 5.24597 5.38270 5.53808 5.65808 5.77770 5.83446 5.97413 6.01837 6.16613 6.20901 6.29103 7.50062 7.98167 8.13212 8.51571 9.10204 9.46030 9.95430 10.69761 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.033534 B = 0.002504 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.779476 B =11181.601902 C =11533.135401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.303 4.303 8 H 0.105 0.895 9 N -0.556 5.556 10 C 0.441 3.559 11 O -0.597 6.597 12 C -0.128 4.128 13 C -0.009 4.009 14 C 0.203 3.797 15 N -0.479 5.479 16 C 0.227 3.773 17 C -0.041 4.041 18 C -0.106 4.106 19 C -0.233 4.233 20 S 0.189 5.811 21 C -0.201 4.201 22 N -0.381 5.381 23 O 0.080 5.920 24 H 0.273 0.727 25 H 0.394 0.606 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.149 0.851 31 H 0.171 0.829 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 -21.525 -3.811 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.191 5.191 10 C 0.227 3.773 11 O -0.483 6.483 12 C -0.170 4.170 13 C -0.048 4.048 14 C -0.017 4.017 15 N -0.212 5.212 16 C -0.046 4.046 17 C -0.056 4.056 18 C -0.136 4.136 19 C -0.368 4.368 20 S 0.454 5.546 21 C -0.341 4.341 22 N -0.089 5.089 23 O 0.020 5.980 24 H 0.083 0.917 25 H 0.227 0.773 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.167 0.833 31 H 0.188 0.812 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.329 -22.583 -5.136 23.560 hybrid contribution 0.096 1.623 1.518 2.224 sum -4.234 -20.960 -3.618 21.687 Atomic orbital electron populations 1.69613 1.06004 1.28358 1.49959 1.25301 0.95642 0.99873 0.97033 0.85838 0.79254 0.80645 0.78455 1.20328 1.20883 1.19319 1.19737 0.93452 0.82155 1.47897 0.87721 1.41873 1.09357 1.04636 1.63273 1.19583 0.88106 0.84648 0.84964 1.90537 1.13744 1.87281 1.56755 1.21469 0.98408 0.93069 1.04030 1.20050 0.95806 0.81487 1.07498 1.29097 0.95092 0.97540 0.80002 1.72036 1.15699 1.04811 1.28695 1.23386 0.99195 0.94583 0.87387 1.16362 1.04227 0.94006 0.91046 1.20139 0.98918 0.93031 1.01560 1.25618 1.09696 1.05710 0.95795 1.83162 1.50446 1.13565 1.07424 1.25224 1.06007 1.04592 0.98309 1.74907 1.15611 1.03604 1.14799 1.85288 1.51905 1.24886 1.35913 0.91728 0.77253 0.89533 0.89650 0.87125 0.86375 0.83308 0.81161 0.80556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.56 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.62 5.29 -10.96 -0.06 -13.68 16 10 C 0.44 9.76 7.78 -10.99 -0.09 9.67 16 11 O -0.60 -15.07 15.56 5.54 0.09 -14.98 16 12 C -0.13 -2.07 5.68 -27.89 -0.16 -2.23 16 13 C -0.01 -0.13 5.13 -27.88 -0.14 -0.27 16 14 C 0.20 2.92 7.75 -12.98 -0.10 2.82 16 15 N -0.48 -7.30 11.48 -9.86 -0.11 -7.42 16 16 C 0.23 3.34 7.88 -156.07 -1.23 2.11 16 17 C -0.04 -0.50 5.80 -106.62 -0.62 -1.12 16 18 C -0.11 -1.09 10.03 -40.84 -0.41 -1.50 16 19 C -0.23 -1.82 11.20 28.97 0.32 -1.49 16 20 S 0.19 1.43 23.09 -107.50 -2.48 -1.05 16 21 C -0.20 -2.11 10.67 29.40 0.31 -1.80 16 22 N -0.38 -5.76 12.10 30.99 0.38 -5.39 16 23 O 0.08 1.17 11.29 18.05 0.20 1.37 16 24 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 26 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.11 1.50 8.10 -51.93 -0.42 1.08 16 29 H 0.12 1.72 8.10 -51.93 -0.42 1.30 16 30 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -31.03 309.86 -6.75 -37.78 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -2.79 Total: 8.09 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.35 Total: -1.64 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.93 Total: -49.80 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.29 Total: -13.61 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.48 Total: -1.05 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.03 -6.75 -37.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162030031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.301 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds