Wall clock time and date at job start Tue Mar 31 2020 06:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86797 * 120.00340 * 2 1 4 4 H 1.48496 * 109.47430 * 270.00020 * 3 2 1 5 5 H 1.48498 * 109.47118 * 30.00082 * 3 2 1 6 6 H 1.48503 * 109.47136 * 149.99616 * 3 2 1 7 7 C 1.38953 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99998 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00219 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00023 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00369 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47466 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 10 15 15 N 1.30970 * 126.42262 * 89.70973 * 14 13 12 16 16 C 1.35267 * 105.57846 * 179.89415 * 15 14 13 17 17 C 1.48234 * 126.42491 * 180.17127 * 16 15 14 18 18 C 1.39591 * 122.84335 * 179.97438 * 17 16 15 19 19 C 1.33168 * 113.73664 * 179.80878 * 18 17 16 20 20 S 1.75734 * 109.74276 * 0.43984 * 19 18 17 21 21 C 1.34458 * 122.85135 * 0.28863 * 17 16 15 22 22 N 1.30869 * 107.14737 * 0.37539 * 16 15 14 23 23 O 1.21293 * 110.07689 * 359.75980 * 22 16 15 24 24 H 0.97002 * 119.99781 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00141 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.47120 * 59.99760 * 12 10 9 27 27 H 1.08998 * 109.46862 * 300.00562 * 12 10 9 28 28 H 1.09002 * 109.47153 * 59.99773 * 13 12 10 29 29 H 1.09001 * 109.46832 * 299.99964 * 13 12 10 30 30 H 1.07997 * 123.13775 * 0.02982 * 18 17 16 31 31 H 1.08001 * 125.12614 * 180.18235 * 19 18 17 32 32 H 1.07995 * 124.73841 * 359.94633 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 6 2.2378 -6.0259 -0.0004 14 6 1.4843 -7.3310 -0.0003 15 7 1.0913 -8.0021 -1.0541 16 6 0.4632 -9.0991 -0.5728 17 6 -0.1596 -10.1795 -1.3742 18 6 -0.7904 -11.2828 -0.7970 19 6 -1.2902 -12.1400 -1.6852 20 16 -0.9583 -11.5684 -3.3135 21 6 -0.1594 -10.1829 -2.7188 22 7 0.5045 -9.0255 0.7332 23 8 1.0866 -8.0178 1.0752 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3907 -0.0005 26 1 0.6173 -4.9205 -0.8914 27 1 0.6166 -4.9208 0.8885 28 1 2.8639 -5.9682 0.8901 29 1 2.8652 -5.9682 -0.8899 30 1 -0.8692 -11.4262 0.2705 31 1 -1.8161 -13.0513 -1.4416 32 1 0.2839 -9.4156 -3.3361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162030031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:56 Heat of formation + Delta-G solvation = 34.202641 kcal Electronic energy + Delta-G solvation = -19396.933487 eV Core-core repulsion = 16065.495524 eV Total energy + Delta-G solvation = -3331.437963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.63302 -40.21047 -39.33297 -36.87018 -36.09763 -35.14106 -33.29563 -32.14673 -30.74671 -27.85192 -26.72449 -25.73719 -24.00239 -23.10624 -21.02518 -20.26246 -19.90020 -19.18912 -18.84243 -18.36869 -17.75615 -16.61158 -16.55301 -16.37736 -15.83147 -15.42085 -14.63323 -14.58455 -14.43082 -14.17708 -13.82595 -13.72911 -13.44511 -13.40282 -13.30129 -12.91160 -12.78030 -12.40171 -12.26089 -12.11162 -12.10367 -11.94497 -11.50666 -11.31059 -10.39946 -10.02323 -9.94751 -9.34860 -8.46489 -5.95416 -0.40210 0.13266 0.57616 0.84257 0.89410 1.39409 1.44141 1.56462 1.67278 1.95095 2.03122 2.30933 2.47506 2.95441 3.21367 3.24839 3.79107 3.91271 3.98037 4.10576 4.31083 4.39833 4.47662 4.56880 4.64328 4.69163 4.89263 4.98836 5.00651 5.16615 5.26825 5.42864 5.99166 6.56870 7.01911 7.11277 7.54599 8.07617 8.70801 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.033534 B = 0.002504 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.779476 B =11181.601902 C =11533.135401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.084 0.916 9 N -0.571 5.571 10 C 0.445 3.555 11 O -0.629 6.629 12 C -0.114 4.114 13 C 0.001 3.999 14 C 0.208 3.792 15 N -0.493 5.493 16 C 0.224 3.776 17 C -0.073 4.073 18 C -0.129 4.129 19 C -0.221 4.221 20 S 0.256 5.744 21 C -0.218 4.218 22 N -0.395 5.395 23 O 0.077 5.923 24 H 0.278 0.722 25 H 0.397 0.603 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.147 0.853 31 H 0.202 0.798 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.128 -22.805 -4.527 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.102 0.898 9 N -0.206 5.206 10 C 0.233 3.767 11 O -0.516 6.516 12 C -0.156 4.156 13 C -0.038 4.038 14 C -0.012 4.012 15 N -0.227 5.227 16 C -0.048 4.048 17 C -0.089 4.089 18 C -0.159 4.159 19 C -0.356 4.356 20 S 0.521 5.479 21 C -0.358 4.358 22 N -0.105 5.105 23 O 0.019 5.981 24 H 0.087 0.913 25 H 0.231 0.769 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.165 0.835 31 H 0.219 0.781 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.191 -23.876 -5.848 25.123 hybrid contribution 0.337 1.869 1.650 2.516 sum -4.854 -22.007 -4.198 22.923 Atomic orbital electron populations 1.69677 1.06937 1.29354 1.50184 1.26069 0.96507 1.02562 0.96208 0.84922 0.77970 0.76817 0.78633 1.19687 1.19783 1.19483 1.19727 0.92898 0.83871 1.49832 0.89779 1.41961 1.09479 1.04827 1.64381 1.20518 0.87969 0.85860 0.82402 1.90515 1.15554 1.88095 1.57481 1.21355 0.98354 0.90081 1.05763 1.19912 0.95265 0.80789 1.07879 1.28950 0.94875 0.97386 0.79997 1.72038 1.16198 1.05347 1.29101 1.23891 0.98587 0.94848 0.87481 1.16628 1.06047 0.94533 0.91696 1.20154 1.00343 0.93374 1.02008 1.26043 1.08011 1.05875 0.95720 1.82958 1.47960 1.10778 1.06199 1.25414 1.06345 1.06095 0.97965 1.74892 1.16448 1.03929 1.15206 1.85268 1.52034 1.24940 1.35869 0.91300 0.76899 0.88167 0.87415 0.86304 0.86634 0.83549 0.78064 0.80899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.14 13.05 21.66 0.28 -48.85 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 3 Si 0.99 42.08 29.55 68.60 2.03 44.10 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 9 N -0.57 -28.25 5.29 -306.98 -1.62 -29.87 16 10 C 0.44 19.70 7.78 87.66 0.68 20.38 16 11 O -0.63 -32.07 15.56 -3.08 -0.05 -32.12 16 12 C -0.11 -3.57 5.68 29.85 0.17 -3.40 16 13 C 0.00 0.02 5.13 29.85 0.15 0.18 16 14 C 0.21 5.88 7.75 88.35 0.68 6.56 16 15 N -0.49 -14.89 11.48 -302.34 -3.47 -18.36 16 16 C 0.22 6.57 7.88 137.19 1.08 7.66 16 17 C -0.07 -1.76 5.80 -21.16 -0.12 -1.88 16 18 C -0.13 -2.50 10.03 21.45 0.22 -2.29 16 19 C -0.22 -2.85 11.20 66.68 0.75 -2.10 16 20 S 0.26 3.16 23.09 -56.49 -1.30 1.86 16 21 C -0.22 -4.33 10.67 66.95 0.71 -3.62 16 22 N -0.40 -11.92 12.10 -58.95 -0.71 -12.64 16 23 O 0.08 2.22 11.29 74.64 0.84 3.06 16 24 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 25 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 26 H 0.10 2.92 8.14 -2.39 -0.02 2.91 16 27 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.12 3.13 8.10 -2.39 -0.02 3.11 16 29 H 0.12 3.32 8.10 -2.39 -0.02 3.30 16 30 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 31 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -67.00 309.86 2.05 -64.96 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.45 Total: 24.20 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 5.61 Total: 3.66 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -5.52 Total: -109.72 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: 0.79 Total: -29.06 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.30 Total: 1.86 kcal Total: -67.00 2.05 -64.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162030031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.158 kcal (2) G-P(sol) polarization free energy of solvation -67.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds