Wall clock time and date at job start Tue Mar 31 2020 06:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00025 * 2 1 4 4 H 1.48493 * 109.47139 * 239.99885 * 3 2 1 5 5 H 1.48502 * 109.47325 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46891 * 119.99529 * 3 2 1 7 7 C 1.37881 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99424 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00009 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46988 * 179.97438 * 9 7 2 11 11 C 1.46507 * 120.00122 * 96.22278 * 10 9 7 12 12 C 1.50698 * 109.47108 * 264.98832 * 11 10 9 13 13 C 1.34512 * 125.79363 * 89.99672 * 12 11 10 14 14 C 1.41374 * 106.84231 * 179.79272 * 13 12 11 15 15 C 1.34512 * 106.84178 * 0.37450 * 14 13 12 16 16 O 1.34304 * 125.78395 * 270.02474 * 12 11 10 17 17 C 1.34778 * 120.00128 * 276.22424 * 10 9 7 18 18 O 1.21606 * 120.00102 * 185.56843 * 17 10 9 19 19 C 1.47452 * 119.99752 * 5.56521 * 17 10 9 20 20 C 1.37982 * 124.15081 * 175.40694 * 19 17 10 21 21 S 1.72102 * 104.03076 * 179.97438 * 20 19 17 22 22 N 1.56403 * 96.15568 * 359.97438 * 21 20 19 23 23 N 1.27418 * 109.87622 * 359.75226 * 22 21 20 24 24 H 0.97000 * 120.00100 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47171 * 59.99728 * 9 7 2 26 26 H 1.08994 * 109.47177 * 299.99945 * 9 7 2 27 27 H 1.09002 * 109.46809 * 144.98147 * 11 10 9 28 28 H 1.08997 * 109.46618 * 24.98872 * 11 10 9 29 29 H 1.08005 * 126.57512 * 0.02562 * 13 12 11 30 30 H 1.08003 * 126.58362 * 180.23779 * 14 13 12 31 31 H 1.08007 * 125.79414 * 179.89190 * 15 14 13 32 32 H 1.08003 * 127.98752 * 359.95769 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.5745 -4.2588 1.2618 12 6 3.8463 -3.6434 1.7860 13 6 3.9258 -2.5833 2.6102 14 6 5.3001 -2.3511 2.8475 15 6 5.9785 -3.2780 2.1475 16 8 5.0927 -4.0600 1.5090 17 6 2.7371 -4.0426 -1.1598 18 8 3.4476 -5.0295 -1.1733 19 6 2.4600 -3.3164 -2.4128 20 6 3.0321 -3.6252 -3.6298 21 16 2.3557 -2.4720 -4.7135 22 7 1.4719 -1.7409 -3.6502 23 7 1.6239 -2.2889 -2.5099 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8902 27 1 2.7294 -5.3244 1.0923 28 1 1.7760 -4.1191 1.9905 29 1 3.0984 -2.0202 3.0161 30 1 5.7240 -1.5766 3.4695 31 1 7.0531 -3.3792 2.1091 32 1 3.7410 -4.4094 -3.8513 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162463536.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:48 Heat of formation + Delta-G solvation = 56.476249 kcal Electronic energy + Delta-G solvation = -21493.652143 eV Core-core repulsion = 18163.180037 eV Total energy + Delta-G solvation = -3330.472107 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.39076 -41.98334 -40.17253 -37.00339 -34.54933 -33.81460 -33.10720 -31.64012 -29.12869 -28.11196 -26.92000 -25.12434 -23.68291 -22.56479 -21.59294 -21.12802 -19.47298 -18.66549 -18.21861 -17.48733 -17.16703 -16.78987 -16.77482 -16.32509 -16.05573 -15.83429 -15.09109 -14.59683 -14.21829 -13.97510 -13.74480 -13.64637 -13.50752 -13.09195 -12.91318 -12.85654 -12.72500 -12.50808 -12.07044 -11.70567 -11.24393 -10.97061 -10.77586 -10.74609 -10.64204 -10.35400 -9.70106 -9.30683 -8.06097 -6.09270 -0.76919 0.13756 0.57413 0.77331 0.85356 1.36243 1.37904 1.43697 1.72747 2.06847 2.30774 2.35819 2.48492 3.05080 3.29625 3.73222 3.87080 3.94644 4.16561 4.22676 4.39266 4.46138 4.51853 4.88867 4.98273 5.10751 5.26602 5.44054 5.66801 5.74961 5.83488 6.22714 6.27275 6.40996 6.73454 6.95430 7.11985 7.54106 9.01864 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.011843 B = 0.008491 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.646718 B = 3296.941985 C = 4766.416705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.038 3.962 3 Si 0.928 3.072 4 H -0.288 1.288 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.493 4.493 8 H 0.032 0.968 9 C 0.246 3.754 10 N -0.580 5.580 11 C 0.196 3.804 12 C -0.042 4.042 13 C -0.192 4.192 14 C -0.230 4.230 15 C -0.045 4.045 16 O -0.189 6.189 17 C 0.597 3.403 18 O -0.564 6.564 19 C -0.051 4.051 20 C -0.234 4.234 21 S 0.507 5.493 22 N -0.344 5.344 23 N -0.173 5.173 24 H 0.260 0.740 25 H 0.058 0.942 26 H 0.026 0.974 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.143 0.857 30 H 0.165 0.835 31 H 0.238 0.762 32 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.916 -7.009 -3.716 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.163 4.163 3 Si 0.756 3.244 4 H -0.214 1.214 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.532 4.532 8 H 0.050 0.950 9 C 0.125 3.875 10 N -0.308 5.308 11 C 0.074 3.926 12 C -0.093 4.093 13 C -0.212 4.212 14 C -0.249 4.249 15 C -0.112 4.112 16 O -0.085 6.085 17 C 0.382 3.618 18 O -0.445 6.445 19 C -0.199 4.199 20 C -0.391 4.391 21 S 0.643 5.357 22 N -0.324 5.324 23 N -0.041 5.041 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.116 0.884 28 H 0.146 0.854 29 H 0.161 0.839 30 H 0.183 0.817 31 H 0.254 0.746 32 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 7.146 -6.194 -4.711 10.566 hybrid contribution 0.970 0.531 1.240 1.662 sum 8.117 -5.663 -3.471 10.488 Atomic orbital electron populations 1.69964 1.06603 1.27064 1.51433 1.25210 0.95141 1.00609 0.95299 0.86085 0.78787 0.81421 0.78103 1.21416 1.20785 1.19760 1.21069 0.91578 0.91206 1.49382 0.94974 1.19615 0.87260 0.82145 0.98462 1.48250 1.43158 1.34519 1.04894 1.19953 0.90102 0.96973 0.85601 1.22926 0.85045 0.99689 1.01647 1.21778 0.98341 0.98409 1.02708 1.22117 0.93132 1.03497 1.06172 1.24768 0.96492 0.93058 0.96884 1.84050 1.15723 1.50363 1.58381 1.16994 0.79536 0.82705 0.82545 1.90714 1.40245 1.26710 1.86795 1.22738 1.01551 0.98259 0.97349 1.29156 1.06434 1.07902 0.95645 1.80716 1.25045 1.11627 1.18263 1.78681 1.25213 1.27033 1.01435 1.72335 1.14667 1.05336 1.11798 0.93059 0.92459 0.95639 0.88368 0.85410 0.83929 0.81725 0.74585 0.75399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.92 13.29 21.45 0.28 -51.63 16 2 C 0.04 2.05 5.46 84.65 0.46 2.52 16 3 Si 0.93 44.65 29.54 68.60 2.03 46.68 16 4 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.49 -26.27 7.86 25.60 0.20 -26.07 16 8 H 0.03 1.81 7.81 -2.91 -0.02 1.79 16 9 C 0.25 12.02 4.80 85.63 0.41 12.43 16 10 N -0.58 -24.92 2.47 -834.37 -2.06 -26.98 16 11 C 0.20 7.16 5.98 85.63 0.51 7.67 16 12 C -0.04 -1.60 6.86 24.83 0.17 -1.43 16 13 C -0.19 -7.11 10.81 22.19 0.24 -6.87 16 14 C -0.23 -7.24 10.91 22.19 0.24 -7.00 16 15 C -0.04 -1.31 12.09 66.97 0.81 -0.51 16 16 O -0.19 -6.99 10.65 -2.54 -0.03 -7.02 16 17 C 0.60 25.68 7.57 86.67 0.66 26.34 16 18 O -0.56 -24.55 16.43 -4.05 -0.07 -24.62 16 19 C -0.05 -2.05 6.56 41.36 0.27 -1.78 16 20 C -0.23 -6.84 11.21 67.76 0.76 -6.08 16 21 S 0.51 13.14 23.38 -56.49 -1.32 11.82 16 22 N -0.34 -13.64 12.49 37.02 0.46 -13.18 16 23 N -0.17 -7.73 6.94 -50.34 -0.35 -8.08 16 24 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 25 H 0.06 3.04 5.61 -2.39 -0.01 3.02 16 26 H 0.03 1.28 7.78 -2.39 -0.02 1.26 16 27 H 0.10 3.35 7.50 -2.39 -0.02 3.33 16 28 H 0.13 4.06 7.79 -2.39 -0.02 4.05 16 29 H 0.14 5.36 8.06 -2.91 -0.02 5.34 16 30 H 0.17 4.24 8.06 -2.91 -0.02 4.21 16 31 H 0.24 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.23 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -70.50 303.64 4.85 -65.65 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.17 Total: 8.15 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 4.74 Total: -0.79 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -1.66 Total: -99.88 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.09 Total: -31.63 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 13.14 SS G_CDS: -1.32 Total: 11.82 kcal Total: -70.50 4.85 -65.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162463536.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.130 kcal (2) G-P(sol) polarization free energy of solvation -70.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds