Wall clock time and date at job start Tue Mar 31 2020 06:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00143 * 2 1 4 4 H 1.48496 * 109.47395 * 270.00319 * 3 2 1 5 5 H 1.48503 * 109.47252 * 30.00254 * 3 2 1 6 6 H 1.48501 * 109.47126 * 150.00373 * 3 2 1 7 7 C 1.37882 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99306 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00035 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47113 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00038 * 263.31096 * 10 9 7 12 12 C 1.50699 * 109.46475 * 269.99519 * 11 10 9 13 13 C 1.34513 * 125.79076 * 90.00482 * 12 11 10 14 14 C 1.41383 * 106.84577 * 179.97438 * 13 12 11 15 15 C 1.34520 * 106.83921 * 359.97438 * 14 13 12 16 16 O 1.34307 * 125.79112 * 269.69050 * 12 11 10 17 17 C 1.34779 * 119.99943 * 83.30558 * 10 9 7 18 18 O 1.21565 * 119.99914 * 183.58371 * 17 10 9 19 19 C 1.47751 * 119.99885 * 3.58102 * 17 10 9 20 20 C 1.39347 * 124.11432 * 173.58321 * 19 17 10 21 21 N 1.30097 * 112.14488 * 180.23276 * 20 19 17 22 22 S 1.55925 * 108.75144 * 359.59507 * 21 20 19 23 23 N 1.31492 * 124.11509 * 353.54099 * 19 17 10 24 24 H 0.97006 * 119.99627 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47188 * 60.00771 * 9 7 2 26 26 H 1.08998 * 109.47533 * 300.00561 * 9 7 2 27 27 H 1.08994 * 109.47162 * 29.99412 * 11 10 9 28 28 H 1.08999 * 109.47386 * 149.99906 * 11 10 9 29 29 H 1.08002 * 126.58128 * 0.03323 * 13 12 11 30 30 H 1.07994 * 126.58431 * 179.97438 * 14 13 12 31 31 H 1.07992 * 125.79216 * 180.02562 * 15 14 13 32 32 H 1.08001 * 123.92938 * 359.96458 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.5665 -4.2656 -1.2606 12 6 1.6186 -5.4064 -1.5270 13 6 0.4614 -5.3250 -2.2080 14 6 -0.1008 -6.6222 -2.2169 15 6 0.7467 -7.4189 -1.5413 16 8 1.7887 -6.6780 -1.1298 17 6 2.7442 -4.0365 1.1587 18 8 3.5827 -4.9167 1.1521 19 6 2.3185 -3.4314 2.4376 20 6 2.7227 -3.8873 3.6908 21 7 2.2050 -3.1875 4.6577 22 16 1.3121 -2.0668 4.0429 23 7 1.5127 -2.3965 2.5317 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 2.5043 -3.5438 -2.0749 28 1 3.5849 -4.6480 -1.1911 29 1 0.0426 -4.4390 -2.6618 30 1 -1.0320 -6.9170 -2.6776 31 1 0.6139 -8.4758 -1.3633 32 1 3.3851 -4.7268 3.8421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162485867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:47 Heat of formation + Delta-G solvation = 61.191350 kcal Electronic energy + Delta-G solvation = -21173.720890 eV Core-core repulsion = 17843.453246 eV Total energy + Delta-G solvation = -3330.267645 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.23263 -40.58204 -38.46975 -35.38576 -33.14957 -32.67368 -32.52149 -30.34203 -27.33801 -27.13150 -25.35433 -23.17956 -22.01046 -21.39120 -20.29844 -18.99574 -18.79930 -17.17762 -16.69802 -16.16822 -15.96338 -15.43638 -15.18741 -14.84786 -14.51154 -14.39056 -13.73146 -13.01813 -12.56528 -12.50794 -12.45485 -12.22811 -11.96620 -11.53310 -11.39329 -10.98731 -10.93691 -10.80700 -10.55603 -10.27427 -9.87080 -9.68368 -9.62493 -9.37756 -8.72549 -8.47362 -8.22327 -7.91446 -6.12228 -4.13907 1.05944 1.91802 2.02242 2.06142 2.19890 2.86532 3.22416 3.28021 3.30213 3.33299 3.74082 3.85483 4.35927 4.96218 5.02973 5.21150 5.23775 5.30832 5.37402 5.67187 5.72237 5.86888 5.96275 6.06585 6.22777 6.36686 6.58791 6.78252 6.93976 7.36430 7.43604 7.52881 7.79273 8.08959 8.13482 8.66007 8.88616 9.47997 10.95814 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.012674 B = 0.007125 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.740996 B = 3929.041068 C = 5372.532049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.232 3.768 10 N -0.573 5.573 11 C 0.196 3.804 12 C -0.019 4.019 13 C -0.199 4.199 14 C -0.217 4.217 15 C -0.050 4.050 16 O -0.167 6.167 17 C 0.604 3.396 18 O -0.553 6.553 19 C 0.006 3.994 20 C 0.081 3.919 21 N -0.596 5.596 22 S 0.656 5.344 23 N -0.450 5.450 24 H 0.262 0.738 25 H 0.034 0.966 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.197 0.803 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.095 -8.165 0.999 8.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.132 4.132 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.111 3.889 10 N -0.303 5.303 11 C 0.072 3.928 12 C -0.070 4.070 13 C -0.219 4.219 14 C -0.236 4.236 15 C -0.119 4.119 16 O -0.063 6.063 17 C 0.387 3.613 18 O -0.432 6.432 19 C -0.168 4.168 20 C -0.114 4.114 21 N -0.435 5.435 22 S 0.698 5.302 23 N -0.297 5.297 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.214 0.786 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.718 -7.068 2.159 7.426 hybrid contribution 1.032 -0.208 -0.980 1.439 sum 0.314 -7.276 1.179 7.378 Atomic orbital electron populations 1.69921 1.05782 1.26820 1.50071 1.24783 0.94716 0.98605 0.95145 0.86682 0.79921 0.83678 0.78269 1.20590 1.21047 1.20077 1.21272 0.93004 0.90280 1.50604 0.92685 1.20004 0.87611 0.81659 0.99589 1.48216 1.44400 1.33616 1.04019 1.19779 0.96111 0.88909 0.87971 1.23150 0.99385 0.83911 1.00599 1.21689 0.96150 0.98731 1.05303 1.21799 1.02202 0.93785 1.05795 1.23974 0.88136 0.97599 1.02173 1.84097 1.41362 1.19123 1.61679 1.16840 0.81184 0.81216 0.82050 1.90735 1.33491 1.32246 1.86679 1.22437 1.00996 0.96059 0.97319 1.23678 1.00687 1.01324 0.85757 1.72190 1.18904 1.14192 1.38242 1.79329 1.34694 1.26037 0.90097 1.73795 1.17526 1.16131 1.22254 0.92792 0.94814 0.90825 0.86640 0.88758 0.83273 0.83825 0.78634 0.77876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.76 13.29 55.43 0.74 -23.03 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -12.96 8.26 -34.44 -0.28 -13.25 16 8 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 9 C 0.23 5.41 4.77 -5.20 -0.02 5.39 16 10 N -0.57 -11.96 2.46 -177.59 -0.44 -12.40 16 11 C 0.20 3.50 5.93 -5.19 -0.03 3.47 16 12 C -0.02 -0.33 6.90 -35.63 -0.25 -0.57 16 13 C -0.20 -3.21 10.81 -39.70 -0.43 -3.64 16 14 C -0.22 -3.04 10.91 -39.70 -0.43 -3.48 16 15 C -0.05 -0.69 12.09 29.42 0.36 -0.34 16 16 O -0.17 -2.89 10.65 5.68 0.06 -2.83 16 17 C 0.60 12.74 7.61 -12.37 -0.09 12.65 16 18 O -0.55 -11.99 16.37 5.31 0.09 -11.90 16 19 C 0.01 0.12 6.57 -83.71 -0.55 -0.43 16 20 C 0.08 1.39 11.23 -17.87 -0.20 1.19 16 21 N -0.60 -10.04 11.41 19.43 0.22 -9.82 16 22 S 0.66 10.99 23.69 -107.50 -2.55 8.44 16 23 N -0.45 -9.27 6.90 23.17 0.16 -9.11 16 24 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 25 H 0.03 0.82 8.02 -51.93 -0.42 0.41 16 26 H 0.07 1.84 5.32 -51.93 -0.28 1.56 16 27 H 0.12 1.89 8.07 -51.93 -0.42 1.47 16 28 H 0.09 1.64 7.37 -51.93 -0.38 1.26 16 29 H 0.15 2.31 8.06 -52.49 -0.42 1.88 16 30 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.20 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.20 2.97 8.06 -52.49 -0.42 2.55 16 LS Contribution 303.28 15.07 4.57 4.57 Total: -1.00 -29.97 303.28 -6.93 -36.91 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -2.73 Total: 1.14 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.03 Total: 2.70 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.68 Total: -54.35 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.15 Total: -14.73 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 10.99 SS G_CDS: -2.55 Total: 8.44 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.97 -6.93 -36.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162485867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.100 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds