Wall clock time and date at job start Tue Mar 31 2020 06:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00143 * 2 1 4 4 H 1.48496 * 109.47395 * 270.00319 * 3 2 1 5 5 H 1.48503 * 109.47252 * 30.00254 * 3 2 1 6 6 H 1.48501 * 109.47126 * 150.00373 * 3 2 1 7 7 C 1.37882 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99306 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00035 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47113 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00038 * 263.31096 * 10 9 7 12 12 C 1.50699 * 109.46475 * 269.99519 * 11 10 9 13 13 C 1.34513 * 125.79076 * 90.00482 * 12 11 10 14 14 C 1.41383 * 106.84577 * 179.97438 * 13 12 11 15 15 C 1.34520 * 106.83921 * 359.97438 * 14 13 12 16 16 O 1.34307 * 125.79112 * 269.69050 * 12 11 10 17 17 C 1.34779 * 119.99943 * 83.30558 * 10 9 7 18 18 O 1.21565 * 119.99914 * 183.58371 * 17 10 9 19 19 C 1.47751 * 119.99885 * 3.58102 * 17 10 9 20 20 C 1.39347 * 124.11432 * 173.58321 * 19 17 10 21 21 N 1.30097 * 112.14488 * 180.23276 * 20 19 17 22 22 S 1.55925 * 108.75144 * 359.59507 * 21 20 19 23 23 N 1.31492 * 124.11509 * 353.54099 * 19 17 10 24 24 H 0.97006 * 119.99627 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47188 * 60.00771 * 9 7 2 26 26 H 1.08998 * 109.47533 * 300.00561 * 9 7 2 27 27 H 1.08994 * 109.47162 * 29.99412 * 11 10 9 28 28 H 1.08999 * 109.47386 * 149.99906 * 11 10 9 29 29 H 1.08002 * 126.58128 * 0.03323 * 13 12 11 30 30 H 1.07994 * 126.58431 * 179.97438 * 14 13 12 31 31 H 1.07992 * 125.79216 * 180.02562 * 15 14 13 32 32 H 1.08001 * 123.92938 * 359.96458 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.5665 -4.2656 -1.2606 12 6 1.6186 -5.4064 -1.5270 13 6 0.4614 -5.3250 -2.2080 14 6 -0.1008 -6.6222 -2.2169 15 6 0.7467 -7.4189 -1.5413 16 8 1.7887 -6.6780 -1.1298 17 6 2.7442 -4.0365 1.1587 18 8 3.5827 -4.9167 1.1521 19 6 2.3185 -3.4314 2.4376 20 6 2.7227 -3.8873 3.6908 21 7 2.2050 -3.1875 4.6577 22 16 1.3121 -2.0668 4.0429 23 7 1.5127 -2.3965 2.5317 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 2.5043 -3.5438 -2.0749 28 1 3.5849 -4.6480 -1.1911 29 1 0.0426 -4.4390 -2.6618 30 1 -1.0320 -6.9170 -2.6776 31 1 0.6139 -8.4758 -1.3633 32 1 3.3851 -4.7268 3.8421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162485867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:46 Heat of formation + Delta-G solvation = 42.669482 kcal Electronic energy + Delta-G solvation = -21174.524059 eV Core-core repulsion = 17843.453246 eV Total energy + Delta-G solvation = -3331.070813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.44845 -42.06157 -40.03159 -37.04696 -34.68641 -34.40631 -33.81706 -31.74039 -29.14593 -28.56295 -26.76888 -24.99866 -23.48295 -22.59912 -21.56114 -20.46090 -20.27425 -18.76505 -18.18993 -17.84513 -17.39617 -16.95291 -16.63767 -16.36780 -16.05569 -15.88044 -15.15428 -14.59880 -14.25711 -13.91768 -13.71379 -13.62139 -13.52027 -13.05358 -12.97344 -12.73088 -12.56639 -12.32939 -12.07521 -12.02438 -11.70724 -11.34497 -11.01719 -10.80886 -10.40534 -10.13521 -9.64037 -9.40232 -8.09154 -6.16332 -0.40615 0.56154 0.60504 0.71552 0.84699 1.40222 1.43944 1.50779 1.68503 2.01829 2.20885 2.38226 2.47866 3.23844 3.48787 3.73554 3.85623 4.14628 4.17945 4.31670 4.38157 4.53352 4.56966 4.85794 4.94285 5.04506 5.21111 5.43012 5.50931 5.63594 5.74697 5.83684 6.19383 6.23998 6.40577 6.87433 7.07742 7.48840 8.98328 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.012674 B = 0.007125 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.740996 B = 3929.041068 C = 5372.532049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.034 3.966 3 Si 0.937 3.063 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.513 4.513 8 H 0.042 0.958 9 C 0.249 3.751 10 N -0.577 5.577 11 C 0.195 3.805 12 C -0.046 4.046 13 C -0.203 4.203 14 C -0.225 4.225 15 C -0.041 4.041 16 O -0.189 6.189 17 C 0.598 3.402 18 O -0.564 6.564 19 C -0.011 4.011 20 C 0.088 3.912 21 N -0.594 5.594 22 S 0.714 5.286 23 N -0.496 5.496 24 H 0.263 0.737 25 H 0.018 0.982 26 H 0.063 0.937 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.149 0.851 30 H 0.172 0.828 31 H 0.240 0.760 32 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.250 -8.810 1.536 8.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.166 4.166 3 Si 0.764 3.236 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.060 0.940 9 C 0.128 3.872 10 N -0.306 5.306 11 C 0.072 3.928 12 C -0.097 4.097 13 C -0.223 4.223 14 C -0.244 4.244 15 C -0.108 4.108 16 O -0.085 6.085 17 C 0.382 3.618 18 O -0.445 6.445 19 C -0.185 4.185 20 C -0.106 4.106 21 N -0.434 5.434 22 S 0.756 5.244 23 N -0.345 5.345 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.080 0.920 27 H 0.140 0.860 28 H 0.113 0.887 29 H 0.167 0.833 30 H 0.190 0.810 31 H 0.256 0.744 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.863 -7.721 2.674 8.216 hybrid contribution 1.034 -0.067 -1.087 1.502 sum 0.172 -7.788 1.588 7.950 Atomic orbital electron populations 1.70002 1.06748 1.27410 1.51096 1.25322 0.95303 1.00990 0.95017 0.85888 0.78669 0.80766 0.78276 1.20186 1.20542 1.20427 1.21335 0.92336 0.91337 1.50255 0.93994 1.19595 0.87543 0.81826 0.98228 1.48201 1.43980 1.33293 1.05143 1.19840 0.96432 0.89468 0.87045 1.22953 1.00086 0.84157 1.02502 1.21910 0.95874 0.99918 1.04632 1.22149 1.03400 0.92669 1.06155 1.24886 0.86549 0.99076 1.00315 1.84076 1.42894 1.19227 1.62344 1.17069 0.80997 0.81152 0.82561 1.90709 1.33971 1.32786 1.87001 1.22454 1.01797 0.96516 0.97708 1.23881 1.00469 1.01597 0.84641 1.72208 1.18950 1.14291 1.37938 1.79033 1.33043 1.24711 0.87613 1.73497 1.18558 1.17089 1.25384 0.92741 0.96404 0.91975 0.85971 0.88733 0.83328 0.81007 0.74382 0.75567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.05 13.29 21.45 0.28 -48.77 16 2 C 0.03 1.75 5.46 84.66 0.46 2.21 16 3 Si 0.94 41.53 29.54 68.60 2.03 43.55 16 4 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.51 -26.28 8.26 25.60 0.21 -26.06 16 8 H 0.04 2.22 7.81 -2.91 -0.02 2.20 16 9 C 0.25 11.89 4.77 85.63 0.41 12.29 16 10 N -0.58 -24.54 2.46 -834.03 -2.05 -26.59 16 11 C 0.19 7.12 5.93 85.63 0.51 7.63 16 12 C -0.05 -1.61 6.90 24.83 0.17 -1.44 16 13 C -0.20 -6.51 10.81 22.19 0.24 -6.27 16 14 C -0.22 -5.89 10.91 22.19 0.24 -5.65 16 15 C -0.04 -1.03 12.09 66.97 0.81 -0.22 16 16 O -0.19 -6.40 10.65 -2.58 -0.03 -6.42 16 17 C 0.60 25.42 7.61 86.76 0.66 26.08 16 18 O -0.56 -24.51 16.37 -3.92 -0.06 -24.58 16 19 C -0.01 -0.45 6.57 41.98 0.28 -0.17 16 20 C 0.09 2.90 11.23 85.22 0.96 3.85 16 21 N -0.59 -18.88 11.41 -92.45 -1.05 -19.94 16 22 S 0.71 22.95 23.69 -56.49 -1.34 21.61 16 23 N -0.50 -20.32 6.90 -80.60 -0.56 -20.87 16 24 H 0.26 13.53 8.31 -92.70 -0.77 12.76 16 25 H 0.02 0.90 8.02 -2.38 -0.02 0.88 16 26 H 0.06 3.17 5.32 -2.39 -0.01 3.15 16 27 H 0.12 4.14 8.07 -2.39 -0.02 4.12 16 28 H 0.09 3.38 7.37 -2.39 -0.02 3.36 16 29 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.24 3.59 8.06 -2.91 -0.02 3.57 16 32 H 0.23 6.17 8.06 -2.91 -0.02 6.15 16 Total: -1.00 -63.30 303.28 3.33 -59.97 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.16 Total: 9.78 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 4.94 Total: 12.25 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -3.38 Total: -116.16 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.09 Total: -31.00 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 22.95 SS G_CDS: -1.34 Total: 21.61 kcal Total: -63.30 3.33 -59.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162485867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.640 kcal (2) G-P(sol) polarization free energy of solvation -63.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds