Wall clock time and date at job start Tue Mar 31 2020 06:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00126 * 2 1 4 4 H 1.48497 * 109.47310 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47306 * 300.00295 * 3 2 1 6 6 H 1.48504 * 109.47052 * 60.00436 * 3 2 1 7 7 C 1.37877 * 119.99482 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99702 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00357 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47279 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47176 * 179.97438 * 10 9 7 12 12 C 1.34927 * 116.99917 * 179.97438 * 11 10 9 13 13 O 1.21664 * 120.00391 * 359.97438 * 12 11 10 14 14 C 1.46218 * 119.99966 * 180.02562 * 12 11 10 15 15 C 1.36935 * 126.00337 * 180.02562 * 14 12 11 16 16 N 1.30304 * 115.29416 * 179.74515 * 15 14 12 17 17 C 1.30959 * 117.33344 * 0.51920 * 16 15 14 18 18 C 1.46842 * 125.28290 * 179.76886 * 17 16 15 19 19 C 1.36436 * 125.97785 * 359.69643 * 18 17 16 20 20 C 1.40603 * 106.71569 * 180.02562 * 19 18 17 21 21 C 1.34962 * 107.09458 * 359.97438 * 20 19 18 22 22 O 1.34162 * 108.74630 * 0.26973 * 21 20 19 23 23 S 1.76127 * 109.42998 * 359.50878 * 17 16 15 24 24 H 0.96998 * 119.99832 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47536 * 59.99968 * 9 7 2 26 26 H 1.09008 * 109.47307 * 299.99662 * 9 7 2 27 27 H 1.08997 * 109.47027 * 59.99455 * 10 9 7 28 28 H 1.08994 * 109.46908 * 299.99564 * 10 9 7 29 29 H 1.08000 * 122.35123 * 0.02562 * 15 14 12 30 30 H 1.08000 * 126.63822 * 0.02562 * 19 18 17 31 31 H 1.08003 * 126.45244 * 180.02562 * 20 19 18 32 32 H 1.08002 * 125.62359 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 8 1.5306 -4.8997 -0.0020 12 6 2.2654 -6.0313 -0.0024 13 8 3.4804 -5.9677 -0.0027 14 6 1.6015 -7.3341 -0.0034 15 6 2.2231 -8.5542 -0.0034 16 7 1.4260 -9.5851 0.0007 17 6 0.1379 -9.3492 -0.0062 18 6 -0.9123 -10.3755 -0.0079 19 6 -0.7139 -11.7254 -0.0085 20 6 -1.9874 -12.3213 -0.0108 21 6 -2.8935 -11.3211 -0.0109 22 8 -2.2414 -10.1486 -0.0148 23 16 -0.1393 -7.6099 -0.0055 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6239 -2.5575 0.8881 27 1 2.8712 -3.6048 0.8890 28 1 2.8724 -3.6040 -0.8909 29 1 3.2984 -8.6551 -0.0022 30 1 0.2373 -12.2370 -0.0075 31 1 -2.2003 -13.3802 -0.0115 32 1 -3.9664 -11.4443 -0.0128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170906653.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:05 Heat of formation + Delta-G solvation = -27.554775 kcal Electronic energy + Delta-G solvation = -19177.806752 eV Core-core repulsion = 15811.398036 eV Total energy + Delta-G solvation = -3366.408716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.98392 -40.31869 -39.39577 -36.31928 -33.57052 -33.38658 -32.09679 -30.48200 -29.35795 -26.29720 -25.06706 -23.04462 -22.02801 -21.82209 -20.90791 -19.68103 -19.03306 -17.63884 -16.88386 -16.62795 -16.43825 -16.19287 -16.04191 -15.21652 -14.58219 -14.57134 -14.38980 -13.44777 -13.34358 -13.29008 -13.08287 -12.82801 -12.40328 -11.76600 -11.35169 -11.10391 -10.83073 -10.79247 -10.52263 -10.52044 -10.14813 -10.09745 -9.70667 -9.68130 -9.63960 -9.32546 -8.47589 -8.39192 -6.13198 -4.17617 -0.45079 0.80199 1.23972 1.32410 2.02607 2.13824 2.48050 2.95739 2.96544 3.26093 3.33672 3.38719 3.93001 4.37007 4.43467 4.53829 4.63984 4.85608 5.19554 5.23624 5.29597 5.41786 5.53980 5.74230 5.97964 5.98827 6.02450 6.52394 6.57169 6.77944 7.21345 7.49830 7.57157 7.81168 8.02029 8.20367 8.88000 9.47031 10.98400 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.032206 B = 0.002777 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.184303 B =10081.892687 C =10930.627611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.025 3.975 10 C 0.073 3.927 11 O -0.345 6.345 12 C 0.537 3.463 13 O -0.497 6.497 14 C -0.273 4.273 15 C 0.130 3.870 16 N -0.460 5.460 17 C 0.129 3.871 18 C 0.027 3.973 19 C -0.126 4.126 20 C -0.220 4.220 21 C -0.007 4.007 22 O -0.165 6.165 23 S 0.233 5.767 24 H 0.263 0.737 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.196 0.804 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 -24.694 -0.030 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.012 4.012 10 C 0.000 4.000 11 O -0.261 6.261 12 C 0.379 3.621 13 O -0.388 6.388 14 C -0.396 4.396 15 C -0.031 4.031 16 N -0.175 5.175 17 C -0.140 4.140 18 C -0.026 4.026 19 C -0.150 4.150 20 C -0.239 4.239 21 C -0.077 4.077 22 O -0.060 6.060 23 S 0.494 5.506 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.213 0.787 30 H 0.179 0.821 31 H 0.176 0.824 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -6.127 -23.979 -0.026 24.749 hybrid contribution 1.458 0.756 -0.002 1.642 sum -4.669 -23.223 -0.027 23.687 Atomic orbital electron populations 1.69983 1.06105 1.26935 1.49798 1.24990 0.94929 0.99438 0.94834 0.86405 0.80058 0.83081 0.77719 1.19563 1.20806 1.20812 1.21006 0.93245 0.90007 1.52153 0.92123 1.19193 0.94115 0.88925 0.98954 1.23373 0.96778 0.78639 1.01222 1.86217 1.41795 1.15376 1.82709 1.19269 0.85234 0.83834 0.73756 1.90888 1.14021 1.87804 1.46079 1.25166 0.97266 0.97031 1.20123 1.22302 1.01573 0.83684 0.95496 1.66392 1.00390 1.33564 1.17189 1.24393 0.91851 0.94274 1.03436 1.18552 0.80325 0.91767 1.11996 1.21984 0.99829 0.91464 1.01762 1.21883 0.92068 1.01006 1.08920 1.24393 0.98770 0.81296 1.03245 1.84077 1.16787 1.33875 1.71307 1.85487 1.02260 0.99985 1.62823 0.92727 0.95280 0.95285 0.92153 0.92147 0.78735 0.82057 0.82440 0.77017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.53 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.62 5.32 37.16 0.20 1.81 16 11 O -0.35 -7.00 10.00 -41.11 -0.41 -7.41 16 12 C 0.54 9.76 7.91 33.94 0.27 10.02 16 13 O -0.50 -9.85 16.64 -19.39 -0.32 -10.17 16 14 C -0.27 -4.05 6.51 -36.85 -0.24 -4.29 16 15 C 0.13 1.68 11.05 -18.67 -0.21 1.48 16 16 N -0.46 -5.83 10.46 -10.98 -0.11 -5.95 16 17 C 0.13 1.58 7.44 -14.45 -0.11 1.47 16 18 C 0.03 0.28 7.21 -36.75 -0.26 0.02 16 19 C -0.13 -1.11 10.79 -39.34 -0.42 -1.53 16 20 C -0.22 -1.43 10.88 -39.85 -0.43 -1.86 16 21 C -0.01 -0.04 12.08 29.57 0.36 0.32 16 22 O -0.17 -1.61 10.67 4.62 0.05 -1.56 16 23 S 0.23 3.05 23.27 -107.50 -2.50 0.55 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 28 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 29 H 0.20 2.14 8.05 -52.49 -0.42 1.72 16 30 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.16 0.60 8.06 -52.48 -0.42 0.18 16 32 H 0.21 0.43 8.06 -52.49 -0.42 0.01 16 LS Contribution 315.08 15.07 4.75 4.75 Total: -1.00 -32.19 315.08 -7.17 -39.37 By element: Atomic # 1 Polarization: -1.94 SS G_CDS: -2.92 Total: -4.86 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.41 Total: -5.51 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.62 Total: -31.50 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.68 Total: -19.13 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.50 Total: 0.55 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.19 -7.17 -39.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170906653.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.810 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds