Wall clock time and date at job start Tue Mar 31 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00126 * 2 1 4 4 H 1.48497 * 109.47310 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47306 * 300.00295 * 3 2 1 6 6 H 1.48504 * 109.47052 * 60.00436 * 3 2 1 7 7 C 1.37877 * 119.99482 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99702 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00357 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47279 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47176 * 179.97438 * 10 9 7 12 12 C 1.34927 * 116.99917 * 179.97438 * 11 10 9 13 13 O 1.21664 * 120.00391 * 359.97438 * 12 11 10 14 14 C 1.46218 * 119.99966 * 180.02562 * 12 11 10 15 15 C 1.36935 * 126.00337 * 180.02562 * 14 12 11 16 16 N 1.30304 * 115.29416 * 179.74515 * 15 14 12 17 17 C 1.30959 * 117.33344 * 0.51920 * 16 15 14 18 18 C 1.46842 * 125.28290 * 179.76886 * 17 16 15 19 19 C 1.36436 * 125.97785 * 359.69643 * 18 17 16 20 20 C 1.40603 * 106.71569 * 180.02562 * 19 18 17 21 21 C 1.34962 * 107.09458 * 359.97438 * 20 19 18 22 22 O 1.34162 * 108.74630 * 0.26973 * 21 20 19 23 23 S 1.76127 * 109.42998 * 359.50878 * 17 16 15 24 24 H 0.96998 * 119.99832 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47536 * 59.99968 * 9 7 2 26 26 H 1.09008 * 109.47307 * 299.99662 * 9 7 2 27 27 H 1.08997 * 109.47027 * 59.99455 * 10 9 7 28 28 H 1.08994 * 109.46908 * 299.99564 * 10 9 7 29 29 H 1.08000 * 122.35123 * 0.02562 * 15 14 12 30 30 H 1.08000 * 126.63822 * 0.02562 * 19 18 17 31 31 H 1.08003 * 126.45244 * 180.02562 * 20 19 18 32 32 H 1.08002 * 125.62359 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 8 1.5306 -4.8997 -0.0020 12 6 2.2654 -6.0313 -0.0024 13 8 3.4804 -5.9677 -0.0027 14 6 1.6015 -7.3341 -0.0034 15 6 2.2231 -8.5542 -0.0034 16 7 1.4260 -9.5851 0.0007 17 6 0.1379 -9.3492 -0.0062 18 6 -0.9123 -10.3755 -0.0079 19 6 -0.7139 -11.7254 -0.0085 20 6 -1.9874 -12.3213 -0.0108 21 6 -2.8935 -11.3211 -0.0109 22 8 -2.2414 -10.1486 -0.0148 23 16 -0.1393 -7.6099 -0.0055 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6239 -2.5575 0.8881 27 1 2.8712 -3.6048 0.8890 28 1 2.8724 -3.6040 -0.8909 29 1 3.2984 -8.6551 -0.0022 30 1 0.2373 -12.2370 -0.0075 31 1 -2.2003 -13.3802 -0.0115 32 1 -3.9664 -11.4443 -0.0128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170906653.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:04 Heat of formation + Delta-G solvation = -47.024729 kcal Electronic energy + Delta-G solvation = -19178.651033 eV Core-core repulsion = 15811.398036 eV Total energy + Delta-G solvation = -3367.252997 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.63095 -41.71500 -40.55330 -37.89842 -35.48337 -34.24038 -33.07429 -32.31615 -30.41216 -27.53474 -26.70770 -24.31994 -23.07193 -22.64236 -22.56472 -20.57283 -20.28203 -18.82630 -18.36322 -17.80827 -17.77383 -17.51180 -17.29651 -16.55111 -16.10145 -15.70955 -15.43289 -14.92873 -14.70495 -14.40736 -13.99958 -13.90019 -13.53186 -13.25871 -13.11365 -12.84063 -12.67334 -12.57724 -12.09844 -11.66447 -11.54683 -11.44701 -11.32407 -11.13034 -10.90279 -10.63795 -10.59681 -9.19307 -8.29091 -6.42351 -1.46021 -0.21497 0.29574 0.40615 1.17421 1.38703 1.40996 1.43032 1.52779 1.58476 1.59194 1.84151 2.38525 3.05542 3.16089 3.54487 3.66950 3.92533 3.96566 4.13715 4.17177 4.17870 4.56920 4.64131 4.82194 4.94444 4.97294 5.11758 5.41021 5.41876 5.44234 5.69690 5.88911 6.03391 6.21703 6.47561 6.71323 7.27578 8.83935 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.032206 B = 0.002777 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.184303 B =10081.892687 C =10930.627611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.066 0.934 9 C 0.031 3.969 10 C 0.089 3.911 11 O -0.355 6.355 12 C 0.541 3.459 13 O -0.520 6.520 14 C -0.311 4.311 15 C 0.157 3.843 16 N -0.474 5.474 17 C 0.158 3.842 18 C -0.021 4.021 19 C -0.109 4.109 20 C -0.226 4.226 21 C 0.015 3.985 22 O -0.183 6.183 23 S 0.215 5.785 24 H 0.268 0.732 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.213 0.787 30 H 0.169 0.831 31 H 0.189 0.811 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 -26.654 -0.034 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.194 4.194 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.085 0.915 9 C -0.006 4.006 10 C 0.015 3.985 11 O -0.272 6.272 12 C 0.386 3.614 13 O -0.411 6.411 14 C -0.434 4.434 15 C -0.004 4.004 16 N -0.189 5.189 17 C -0.110 4.110 18 C -0.074 4.074 19 C -0.134 4.134 20 C -0.245 4.245 21 C -0.055 4.055 22 O -0.079 6.079 23 S 0.478 5.522 24 H 0.077 0.923 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.230 0.770 30 H 0.187 0.813 31 H 0.206 0.794 32 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -6.576 -25.942 -0.029 26.763 hybrid contribution 1.377 1.012 -0.002 1.709 sum -5.199 -24.931 -0.031 25.467 Atomic orbital electron populations 1.70103 1.07842 1.28266 1.50422 1.25981 0.95858 1.03473 0.94048 0.85251 0.78906 0.77969 0.78030 1.18566 1.20026 1.20037 1.21391 0.93761 0.91075 1.52435 0.91538 1.18999 0.94283 0.90553 0.96739 1.22905 0.95427 0.78720 1.01427 1.86188 1.42075 1.15519 1.83390 1.19602 0.85073 0.83982 0.72721 1.90860 1.14766 1.88045 1.47476 1.24794 0.98058 0.95755 1.24764 1.22608 1.02390 0.82969 0.92484 1.66513 1.00480 1.32969 1.18966 1.24784 0.92301 0.93981 0.99931 1.18557 0.80685 0.91945 1.16199 1.22342 1.01378 0.90831 0.98881 1.22284 0.90761 1.02661 1.08781 1.25427 1.00557 0.80121 0.99430 1.84090 1.16445 1.35625 1.71731 1.85469 1.01527 1.01231 1.63969 0.92298 0.97484 0.97494 0.91893 0.91885 0.77031 0.81327 0.79374 0.72811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 2 C 0.01 0.30 5.46 84.65 0.46 0.77 16 3 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.55 -31.35 9.11 25.60 0.23 -31.12 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.03 1.71 5.34 29.85 0.16 1.87 16 10 C 0.09 4.07 5.32 71.98 0.38 4.46 16 11 O -0.36 -15.02 10.00 -58.43 -0.58 -15.61 16 12 C 0.54 20.32 7.91 69.89 0.55 20.87 16 13 O -0.52 -20.99 16.64 19.30 0.32 -20.67 16 14 C -0.31 -9.46 6.51 24.04 0.16 -9.31 16 15 C 0.16 4.02 11.05 84.61 0.93 4.95 16 16 N -0.47 -11.66 10.46 -188.66 -1.97 -13.64 16 17 C 0.16 3.78 7.44 87.08 0.65 4.43 16 18 C -0.02 -0.42 7.21 24.10 0.17 -0.25 16 19 C -0.11 -1.65 10.79 22.43 0.24 -1.41 16 20 C -0.23 -2.07 10.88 22.09 0.24 -1.83 16 21 C 0.01 0.13 12.08 67.07 0.81 0.94 16 22 O -0.18 -3.20 10.67 -6.38 -0.07 -3.27 16 23 S 0.22 5.80 23.27 -56.49 -1.31 4.48 16 24 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 27 H 0.06 2.83 8.13 -2.39 -0.02 2.81 16 28 H 0.06 2.83 8.13 -2.39 -0.02 2.81 16 29 H 0.21 4.49 8.05 -2.91 -0.02 4.47 16 30 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.19 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.26 -0.25 8.06 -2.91 -0.02 -0.28 16 Total: -1.00 -70.85 315.08 4.84 -66.00 By element: Atomic # 1 Polarization: -3.17 SS G_CDS: 1.16 Total: -2.02 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 5.00 Total: -5.63 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -1.69 Total: -69.17 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -0.33 Total: -39.54 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -1.31 Total: 4.48 kcal Total: -70.85 4.84 -66.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170906653.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.978 kcal (2) G-P(sol) polarization free energy of solvation -70.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds