Wall clock time and date at job start Tue Mar 31 2020 07:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99653 * 2 1 4 4 H 1.48502 * 109.46799 * 239.99534 * 3 2 1 5 5 H 1.48498 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47058 * 119.99502 * 3 2 1 7 7 C 1.37871 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47051 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46931 * 179.97438 * 10 9 7 12 12 S 1.80997 * 109.47215 * 180.02562 * 11 10 9 13 13 C 1.76203 * 100.00169 * 180.02562 * 12 11 10 14 14 N 1.30334 * 119.55539 * 0.02562 * 13 12 11 15 15 C 1.36174 * 124.87737 * 179.15240 * 14 13 12 16 16 C 1.40337 * 118.06338 * 203.40756 * 15 14 13 17 17 C 1.37652 * 120.28366 * 180.24223 * 16 15 14 18 18 C 1.38398 * 120.13035 * 0.05383 * 17 16 15 19 19 C 1.38208 * 120.02771 * 359.84874 * 18 17 16 20 20 C 1.38262 * 120.44394 * 0.02562 * 19 18 17 21 21 C 1.50755 * 118.70250 * 180.35113 * 20 19 18 22 22 S 1.76188 * 119.55585 * 179.72583 * 13 12 11 23 23 H 0.97006 * 120.00138 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46871 * 59.99929 * 9 7 2 25 25 H 1.08996 * 109.47162 * 300.00105 * 9 7 2 26 26 H 1.09002 * 109.46973 * 60.00442 * 10 9 7 27 27 H 1.08991 * 109.47261 * 299.99991 * 10 9 7 28 28 H 1.09009 * 109.47371 * 60.00202 * 11 10 9 29 29 H 1.08998 * 109.47857 * 300.00443 * 11 10 9 30 30 H 1.07999 * 119.85489 * 0.23405 * 16 15 14 31 31 H 1.08004 * 119.93635 * 180.02562 * 17 16 15 32 32 H 1.07998 * 119.98572 * 179.85906 * 18 17 16 33 33 H 1.08001 * 119.77217 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.51932 * 262.76290 * 21 20 19 35 35 H 1.09000 * 109.52035 * 22.94495 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 16 2.6567 -6.3627 0.0019 13 6 1.5366 -7.7229 0.0018 14 7 0.2527 -7.4986 0.0008 15 6 -0.7066 -8.4648 -0.0160 16 6 -1.9767 -8.1258 -0.5074 17 6 -2.9818 -9.0657 -0.5405 18 6 -2.7454 -10.3519 -0.0876 19 6 -1.4974 -10.6963 0.3964 20 6 -0.4781 -9.7629 0.4329 21 6 0.8699 -10.1831 0.9611 22 16 2.1673 -9.3681 -0.0049 23 1 -0.4851 0.8401 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 2.8720 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 0.8535 -5.0451 -0.8887 29 1 0.8540 -5.0446 0.8913 30 1 -2.1663 -7.1231 -0.8610 31 1 -3.9570 -8.7988 -0.9202 32 1 -3.5363 -11.0869 -0.1125 33 1 -1.3173 -11.7013 0.7484 34 1 0.9575 -9.8925 2.0080 35 1 0.9749 -11.2644 0.8722 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171643875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:48 Heat of formation + Delta-G solvation = 26.771645 kcal Electronic energy + Delta-G solvation = -17505.244474 eV Core-core repulsion = 14719.777493 eV Total energy + Delta-G solvation = -2785.466981 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04778 -36.26074 -34.50566 -33.05565 -32.05842 -30.51207 -27.79229 -27.47889 -24.78316 -23.40046 -22.45176 -21.27370 -20.38547 -18.04878 -17.49210 -16.34456 -16.27426 -15.61617 -15.30099 -14.73128 -14.62327 -14.46293 -14.27999 -13.81809 -13.54866 -13.07394 -12.63973 -12.50828 -12.20007 -11.86159 -11.75669 -11.54479 -11.30724 -11.01614 -10.86935 -10.62299 -10.30474 -9.84834 -9.67482 -9.42312 -9.19911 -9.10241 -9.06614 -8.37253 -8.15961 -7.57687 -6.02080 -4.05184 0.11725 0.83716 1.06354 1.62787 1.72933 2.11072 2.40953 3.33124 3.37394 3.40012 3.56447 4.09621 4.31183 4.43991 4.44822 4.74486 4.79709 4.97838 5.13459 5.24810 5.33669 5.51170 5.51330 5.61475 5.74667 6.03496 6.08008 6.13746 6.22356 6.47479 6.58073 6.65412 6.96055 7.53459 7.62354 7.73927 7.96290 8.36995 9.00946 9.59033 11.09069 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.003210 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.186429 B = 8721.348781 C = 9822.854157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.100 4.100 11 C -0.091 4.091 12 S -0.022 6.022 13 C 0.168 3.832 14 N -0.490 5.490 15 C 0.111 3.889 16 C -0.085 4.085 17 C -0.108 4.108 18 C -0.121 4.121 19 C -0.095 4.095 20 C -0.127 4.127 21 C -0.063 4.063 22 S -0.106 6.106 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.258 -23.901 0.702 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.139 4.139 11 C -0.240 4.240 12 S 0.215 5.785 13 C -0.230 4.230 14 N -0.209 5.209 15 C 0.003 3.997 16 C -0.105 4.105 17 C -0.127 4.127 18 C -0.140 4.140 19 C -0.115 4.115 20 C -0.134 4.134 21 C -0.213 4.213 22 S 0.127 5.873 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.120 0.880 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.609 -23.538 0.224 23.547 hybrid contribution -1.855 0.643 0.575 2.046 sum -2.465 -22.896 0.800 23.042 Atomic orbital electron populations 1.69956 1.06069 1.26810 1.50536 1.25016 0.94858 0.99279 0.95209 0.86634 0.79569 0.82994 0.78675 1.20183 1.21275 1.20184 1.21174 0.93071 0.90842 1.51050 0.92567 1.19074 0.93684 0.90494 0.97645 1.21578 0.99394 0.91376 1.01596 1.23931 0.99235 0.94111 1.06764 1.86063 1.10329 0.95065 1.87066 1.28920 0.96665 0.99852 0.97560 1.67404 0.99450 1.33963 1.20090 1.18340 0.93647 0.87906 0.99821 1.21189 0.90434 1.00407 0.98503 1.21078 0.99067 0.93204 0.99309 1.21188 0.96896 0.96751 0.99212 1.20843 0.92570 0.98593 0.99534 1.20038 0.94953 0.93931 1.04462 1.22472 0.92604 1.04244 1.01937 1.86236 1.30927 1.01840 1.68301 0.92879 0.96254 0.96262 0.92250 0.92223 0.88927 0.88952 0.84702 0.85166 0.85496 0.85607 0.87994 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 10 C -0.10 -2.03 5.16 -26.73 -0.14 -2.16 16 11 C -0.09 -1.61 4.83 37.16 0.18 -1.43 16 12 S -0.02 -0.34 22.14 -107.50 -2.38 -2.72 16 13 C 0.17 2.52 7.30 52.13 0.38 2.90 16 14 N -0.49 -7.76 8.80 -10.25 -0.09 -7.85 16 15 C 0.11 1.56 6.41 -84.78 -0.54 1.02 16 16 C -0.08 -1.07 9.92 -39.01 -0.39 -1.45 16 17 C -0.11 -1.05 10.02 -39.74 -0.40 -1.45 16 18 C -0.12 -1.04 10.05 -39.53 -0.40 -1.44 16 19 C -0.10 -0.86 9.59 -39.58 -0.38 -1.24 16 20 C -0.13 -1.46 5.63 -104.22 -0.59 -2.05 16 21 C -0.06 -0.62 6.40 36.03 0.23 -0.39 16 22 S -0.11 -1.30 22.41 -107.50 -2.41 -3.71 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.09 1.68 8.12 -51.91 -0.42 1.25 16 29 H 0.09 1.68 8.12 -51.92 -0.42 1.26 16 30 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.78 8.00 -52.49 -0.42 0.36 16 34 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.13 0.87 7.97 -51.92 -0.41 0.45 16 LS Contribution 325.48 15.07 4.90 4.90 Total: -1.00 -30.83 325.48 -11.45 -42.28 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.60 Total: -2.87 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -2.59 Total: -20.53 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.65 Total: -33.92 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -4.79 Total: -6.43 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.83 -11.45 -42.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171643875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.049 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds