Wall clock time and date at job start Tue Mar 31 2020 07:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99653 * 2 1 4 4 H 1.48502 * 109.46799 * 239.99534 * 3 2 1 5 5 H 1.48498 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47058 * 119.99502 * 3 2 1 7 7 C 1.37871 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47051 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46931 * 179.97438 * 10 9 7 12 12 S 1.80997 * 109.47215 * 180.02562 * 11 10 9 13 13 C 1.76203 * 100.00169 * 180.02562 * 12 11 10 14 14 N 1.30334 * 119.55539 * 0.02562 * 13 12 11 15 15 C 1.36174 * 124.87737 * 179.15240 * 14 13 12 16 16 C 1.40337 * 118.06338 * 203.40756 * 15 14 13 17 17 C 1.37652 * 120.28366 * 180.24223 * 16 15 14 18 18 C 1.38398 * 120.13035 * 0.05383 * 17 16 15 19 19 C 1.38208 * 120.02771 * 359.84874 * 18 17 16 20 20 C 1.38262 * 120.44394 * 0.02562 * 19 18 17 21 21 C 1.50755 * 118.70250 * 180.35113 * 20 19 18 22 22 S 1.76188 * 119.55585 * 179.72583 * 13 12 11 23 23 H 0.97006 * 120.00138 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46871 * 59.99929 * 9 7 2 25 25 H 1.08996 * 109.47162 * 300.00105 * 9 7 2 26 26 H 1.09002 * 109.46973 * 60.00442 * 10 9 7 27 27 H 1.08991 * 109.47261 * 299.99991 * 10 9 7 28 28 H 1.09009 * 109.47371 * 60.00202 * 11 10 9 29 29 H 1.08998 * 109.47857 * 300.00443 * 11 10 9 30 30 H 1.07999 * 119.85489 * 0.23405 * 16 15 14 31 31 H 1.08004 * 119.93635 * 180.02562 * 17 16 15 32 32 H 1.07998 * 119.98572 * 179.85906 * 18 17 16 33 33 H 1.08001 * 119.77217 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.51932 * 262.76290 * 21 20 19 35 35 H 1.09000 * 109.52035 * 22.94495 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 16 2.6567 -6.3627 0.0019 13 6 1.5366 -7.7229 0.0018 14 7 0.2527 -7.4986 0.0008 15 6 -0.7066 -8.4648 -0.0160 16 6 -1.9767 -8.1258 -0.5074 17 6 -2.9818 -9.0657 -0.5405 18 6 -2.7454 -10.3519 -0.0876 19 6 -1.4974 -10.6963 0.3964 20 6 -0.4781 -9.7629 0.4329 21 6 0.8699 -10.1831 0.9611 22 16 2.1673 -9.3681 -0.0049 23 1 -0.4851 0.8401 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 2.8720 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 0.8535 -5.0451 -0.8887 29 1 0.8540 -5.0446 0.8913 30 1 -2.1663 -7.1231 -0.8610 31 1 -3.9570 -8.7988 -0.9202 32 1 -3.5363 -11.0869 -0.1125 33 1 -1.3173 -11.7013 0.7484 34 1 0.9575 -9.8925 2.0080 35 1 0.9749 -11.2644 0.8722 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171643875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:47 Heat of formation + Delta-G solvation = 10.764458 kcal Electronic energy + Delta-G solvation = -17505.938597 eV Core-core repulsion = 14719.777493 eV Total energy + Delta-G solvation = -2786.161104 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.90704 -37.22767 -36.40802 -34.10517 -33.84975 -31.39315 -29.46317 -28.55986 -25.84124 -25.27798 -23.30087 -22.19670 -22.14895 -19.11691 -18.55272 -18.36015 -17.07203 -16.71553 -16.54796 -16.30956 -16.19549 -15.38041 -15.28246 -14.99429 -14.48429 -14.37749 -14.03902 -13.77934 -13.58072 -13.33882 -12.98166 -12.91666 -12.72334 -12.48664 -12.35615 -12.09293 -11.77645 -11.69888 -11.36254 -11.18279 -10.64051 -10.56950 -10.16909 -9.88284 -9.16179 -8.67149 -8.21370 -6.33284 -0.83535 -0.19879 0.23387 0.53952 0.85063 1.07845 1.17637 1.40485 1.43764 1.51668 2.40776 2.72814 3.11959 3.29445 3.36966 3.70562 3.95453 4.01859 4.02568 4.15262 4.28052 4.42984 4.44641 4.50486 4.71668 4.75088 4.94482 4.96250 5.09831 5.21476 5.31242 5.44576 5.46520 5.63969 5.80147 5.82572 6.19488 6.52910 6.82466 7.36162 8.90372 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.003210 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.186429 B = 8721.348781 C = 9822.854157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.033 3.967 10 C -0.085 4.085 11 C -0.083 4.083 12 S -0.010 6.010 13 C 0.145 3.855 14 N -0.510 5.510 15 C 0.066 3.934 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.108 4.108 19 C -0.091 4.091 20 C -0.133 4.133 21 C -0.059 4.059 22 S -0.099 6.099 23 H 0.264 0.736 24 H -0.006 1.006 25 H -0.006 1.006 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.153 0.847 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.107 0.893 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 -26.484 1.092 26.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.006 4.006 10 C -0.124 4.124 11 C -0.233 4.233 12 S 0.227 5.773 13 C -0.253 4.253 14 N -0.229 5.229 15 C -0.041 4.041 16 C -0.129 4.129 17 C -0.128 4.128 18 C -0.127 4.127 19 C -0.111 4.111 20 C -0.140 4.140 21 C -0.208 4.208 22 S 0.134 5.866 23 H 0.073 0.927 24 H 0.012 0.988 25 H 0.012 0.988 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.171 0.829 32 H 0.183 0.817 33 H 0.182 0.818 34 H 0.126 0.874 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.458 -26.133 0.614 26.144 hybrid contribution -2.087 1.234 0.458 2.467 sum -2.545 -24.899 1.072 25.052 Atomic orbital electron populations 1.70100 1.07875 1.27926 1.51448 1.26000 0.95775 1.03455 0.94580 0.85472 0.78250 0.77878 0.79294 1.19061 1.20851 1.19038 1.21641 0.93716 0.92067 1.50925 0.91783 1.18942 0.94113 0.92419 0.95136 1.21281 0.98168 0.90894 1.02072 1.23516 0.99410 0.94688 1.05668 1.85763 1.09188 0.94179 1.88219 1.28859 0.96570 1.00954 0.98926 1.67347 1.00232 1.36009 1.19350 1.18656 0.93650 0.89218 1.02594 1.21288 0.91222 1.00623 0.99793 1.21400 0.99172 0.93394 0.98788 1.21693 0.97738 0.96586 0.96706 1.21322 0.91863 0.99651 0.98242 1.20290 0.96450 0.93176 1.04043 1.22696 0.90713 1.05898 1.01498 1.86096 1.32050 0.99727 1.68761 0.92714 0.98797 0.98800 0.91624 0.91658 0.90103 0.90091 0.86519 0.82944 0.81727 0.81758 0.87439 0.81791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.55 -31.42 9.11 25.60 0.23 -31.19 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.77 4.97 29.85 0.15 1.92 16 10 C -0.08 -3.59 5.16 30.59 0.16 -3.43 16 11 C -0.08 -3.11 4.83 71.98 0.35 -2.76 16 12 S -0.01 -0.30 22.14 -56.49 -1.25 -1.55 16 13 C 0.15 4.44 7.30 130.46 0.95 5.39 16 14 N -0.51 -16.86 8.80 -186.35 -1.64 -18.50 16 15 C 0.07 1.88 6.41 39.22 0.25 2.13 16 16 C -0.11 -2.81 9.92 22.64 0.22 -2.59 16 17 C -0.11 -1.94 10.02 22.17 0.22 -1.72 16 18 C -0.11 -1.44 10.05 22.30 0.22 -1.22 16 19 C -0.09 -1.28 9.59 22.27 0.21 -1.07 16 20 C -0.13 -2.79 5.63 -19.60 -0.11 -2.90 16 21 C -0.06 -1.01 6.40 71.25 0.46 -0.55 16 22 S -0.10 -2.31 22.41 -56.49 -1.27 -3.58 16 23 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 26 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.08 3.17 8.12 -2.39 -0.02 3.15 16 29 H 0.08 3.17 8.12 -2.40 -0.02 3.15 16 30 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.16 1.06 8.00 -2.91 -0.02 1.03 16 34 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.16 1.50 7.97 -2.39 -0.02 1.48 16 Total: -1.00 -69.77 325.48 3.01 -66.75 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 1.08 Total: 5.10 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 3.78 Total: -37.53 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -1.36 Total: -75.81 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.52 Total: -5.13 kcal Total: -69.77 3.01 -66.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171643875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.515 kcal (2) G-P(sol) polarization free energy of solvation -69.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds