Wall clock time and date at job start Tue Mar 31 2020 07:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35244 * 107.85971 * 179.87524 * 11 10 9 13 13 C 1.40407 * 107.86620 * 0.38666 * 12 11 10 14 14 N 1.40186 * 125.96940 * 179.76085 * 13 12 11 15 15 C 1.34771 * 120.00353 * 359.97438 * 14 13 12 16 16 O 1.21587 * 119.99969 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00325 * 179.97438 * 15 14 13 18 18 C 1.38993 * 120.00332 * 179.97438 * 17 15 14 19 19 N 1.29625 * 124.94337 * 359.70053 * 18 17 15 20 20 C 1.32020 * 116.90638 * 179.77425 * 19 18 17 21 21 C 1.33410 * 114.57031 * 0.51122 * 20 19 18 22 22 S 1.70964 * 124.94454 * 179.97438 * 18 17 15 23 23 N 1.31212 * 108.05430 * 359.75857 * 13 12 11 24 24 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 26 26 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 27 27 H 1.07996 * 126.06805 * 359.97438 * 11 10 9 28 28 H 1.08003 * 126.06581 * 180.14450 * 12 11 10 29 29 H 0.97005 * 119.99531 * 179.97438 * 14 13 12 30 30 H 0.97005 * 119.99559 * 0.02562 * 17 15 14 31 31 H 1.07996 * 122.71559 * 180.24372 * 20 19 18 32 32 H 1.08003 * 125.96922 * 179.71340 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0532 -4.4047 -0.5781 13 6 4.2964 -4.6707 0.5743 14 7 4.2279 -5.8974 1.2493 15 6 4.9304 -6.9553 0.7979 16 8 5.6233 -6.8458 -0.1953 17 7 4.8649 -8.1345 1.4472 18 6 5.5890 -9.2256 0.9812 19 7 6.3507 -9.2180 -0.0676 20 6 6.9702 -10.3455 -0.3642 21 6 6.7115 -11.3560 0.4676 22 16 5.5995 -10.7748 1.7042 23 7 3.6647 -3.5705 0.9089 24 1 -0.4850 0.8400 0.0004 25 1 3.8711 -0.6780 -0.9023 26 1 3.8785 -0.6824 0.8776 27 1 5.2837 -2.6016 -1.7660 28 1 5.6846 -5.1081 -1.1006 29 1 3.6748 -5.9848 2.0414 30 1 4.3118 -8.2219 2.2393 31 1 7.6294 -10.4432 -1.2140 32 1 7.1136 -12.3558 0.3954 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172220680.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:47 Heat of formation + Delta-G solvation = 130.781727 kcal Electronic energy + Delta-G solvation = -19723.040363 eV Core-core repulsion = 16428.083134 eV Total energy + Delta-G solvation = -3294.957228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.08665 -40.26159 -39.09823 -35.32175 -34.77483 -33.28023 -31.30696 -29.71698 -29.34420 -27.23466 -25.47214 -23.17675 -22.27439 -21.14730 -20.23374 -19.57198 -19.25801 -17.69377 -17.08707 -16.74200 -16.31451 -16.04268 -15.31215 -14.89197 -14.71199 -14.61078 -14.25467 -13.62745 -13.44944 -13.07824 -12.57916 -12.37709 -12.15231 -11.82161 -11.38238 -11.06761 -10.88736 -10.54758 -10.35966 -10.05729 -9.93604 -9.58080 -9.54595 -9.46886 -8.77354 -8.57494 -8.21014 -7.53745 -6.24048 -4.26446 0.52541 0.63515 1.38864 2.14208 2.45086 2.73181 3.06413 3.15423 3.20150 3.21450 3.29872 3.72220 3.94685 4.22422 4.48002 4.98943 5.03845 5.25943 5.36083 5.56598 5.68745 5.86763 6.09859 6.26751 6.42042 6.47731 6.66688 6.68107 7.25296 7.30187 7.51937 7.77662 7.81201 8.32657 8.36386 8.53369 8.85581 9.30880 10.88644 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.050552 B = 0.002725 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.749140 B =10273.260661 C =10614.704016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.086 0.914 9 C 0.232 3.768 10 N -0.319 5.319 11 C 0.053 3.947 12 C -0.281 4.281 13 C 0.277 3.723 14 N -0.636 5.636 15 C 0.707 3.293 16 O -0.502 6.502 17 N -0.641 5.641 18 C 0.297 3.703 19 N -0.476 5.476 20 C 0.074 3.926 21 C -0.282 4.282 22 S 0.115 5.885 23 N -0.296 5.296 24 H 0.268 0.732 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.170 0.830 28 H 0.164 0.836 29 H 0.409 0.591 30 H 0.420 0.580 31 H 0.180 0.820 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.549 -20.653 3.978 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.101 5.101 11 C -0.096 4.096 12 C -0.313 4.313 13 C 0.022 3.978 14 N -0.287 5.287 15 C 0.403 3.597 16 O -0.370 6.370 17 N -0.295 5.295 18 C -0.073 4.073 19 N -0.197 5.197 20 C -0.078 4.078 21 C -0.422 4.422 22 S 0.364 5.636 23 N -0.127 5.127 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.187 0.813 28 H 0.181 0.819 29 H 0.244 0.756 30 H 0.257 0.743 31 H 0.197 0.803 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 11.705 -19.589 4.437 23.247 hybrid contribution 0.725 0.400 -0.446 0.941 sum 12.430 -19.189 3.991 23.208 Atomic orbital electron populations 1.69873 1.06163 1.27307 1.49172 1.24835 0.94875 0.98812 0.94256 0.86887 0.80251 0.83799 0.78995 1.19712 1.18929 1.20595 1.21112 0.87791 0.95711 1.52664 0.89635 1.20063 0.97449 0.72943 0.98248 1.48614 1.32904 1.10120 1.18445 1.22552 0.95919 0.94608 0.96495 1.21554 1.11456 0.96830 1.01424 1.18707 0.99082 0.85544 0.94427 1.41229 1.49104 1.07074 1.31291 1.15564 0.81388 0.79336 0.83393 1.91009 1.40805 1.81163 1.24004 1.42007 1.48367 1.07497 1.31631 1.23357 0.97071 0.91815 0.95030 1.66595 1.10801 1.27472 1.14808 1.21710 0.99436 0.86003 1.00604 1.26802 1.08653 1.05674 1.01096 1.83950 1.45742 1.03263 1.30674 1.77389 1.23703 0.95388 1.16228 0.92174 0.92832 0.94437 0.81293 0.81888 0.75553 0.74276 0.80348 0.80311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 20.08 27.47 -169.99 -4.67 15.41 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.53 -15.01 9.79 -34.44 -0.34 -15.35 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 C 0.23 5.46 5.33 -5.20 -0.03 5.43 16 10 N -0.32 -7.18 3.67 -62.56 -0.23 -7.41 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.84 16 12 C -0.28 -5.51 9.61 -39.83 -0.38 -5.89 16 13 C 0.28 5.46 8.11 -154.37 -1.25 4.20 16 14 N -0.64 -9.56 5.45 -15.51 -0.08 -9.65 16 15 C 0.71 10.54 8.50 -86.93 -0.74 9.80 16 16 O -0.50 -9.38 12.10 5.29 0.06 -9.31 16 17 N -0.64 -6.84 5.41 -17.48 -0.09 -6.93 16 18 C 0.30 3.39 8.02 -87.36 -0.70 2.69 16 19 N -0.48 -6.50 8.65 -15.13 -0.13 -6.64 16 20 C 0.07 0.73 11.34 -19.16 -0.22 0.51 16 21 C -0.28 -2.10 11.35 29.04 0.33 -1.77 16 22 S 0.12 0.87 23.22 -107.50 -2.50 -1.63 16 23 N -0.30 -6.69 12.42 31.44 0.39 -6.30 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.05 1.16 7.12 -51.93 -0.37 0.79 16 26 H 0.04 0.87 7.57 -51.93 -0.39 0.47 16 27 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16 28 H 0.16 3.18 5.91 -52.48 -0.31 2.87 16 29 H 0.41 4.73 8.84 -40.82 -0.36 4.36 16 30 H 0.42 2.65 8.83 -40.82 -0.36 2.29 16 31 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 300.84 15.07 4.53 4.53 Total: -1.00 -36.40 300.84 -8.22 -44.62 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -2.65 Total: 6.56 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -3.62 Total: 2.49 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 0.62 Total: -62.67 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.06 Total: -9.31 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.67 Total: 15.41 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.50 Total: -1.63 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -36.40 -8.22 -44.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172220680.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.398 kcal (2) G-P(sol) polarization free energy of solvation -36.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds