Wall clock time and date at job start Tue Mar 31 2020 07:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35244 * 107.85971 * 179.87524 * 11 10 9 13 13 C 1.40407 * 107.86620 * 0.38666 * 12 11 10 14 14 N 1.40186 * 125.96940 * 179.76085 * 13 12 11 15 15 C 1.34771 * 120.00353 * 359.97438 * 14 13 12 16 16 O 1.21587 * 119.99969 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00325 * 179.97438 * 15 14 13 18 18 C 1.38993 * 120.00332 * 179.97438 * 17 15 14 19 19 N 1.29625 * 124.94337 * 359.70053 * 18 17 15 20 20 C 1.32020 * 116.90638 * 179.77425 * 19 18 17 21 21 C 1.33410 * 114.57031 * 0.51122 * 20 19 18 22 22 S 1.70964 * 124.94454 * 179.97438 * 18 17 15 23 23 N 1.31212 * 108.05430 * 359.75857 * 13 12 11 24 24 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 26 26 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 27 27 H 1.07996 * 126.06805 * 359.97438 * 11 10 9 28 28 H 1.08003 * 126.06581 * 180.14450 * 12 11 10 29 29 H 0.97005 * 119.99531 * 179.97438 * 14 13 12 30 30 H 0.97005 * 119.99559 * 0.02562 * 17 15 14 31 31 H 1.07996 * 122.71559 * 180.24372 * 20 19 18 32 32 H 1.08003 * 125.96922 * 179.71340 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0532 -4.4047 -0.5781 13 6 4.2964 -4.6707 0.5743 14 7 4.2279 -5.8974 1.2493 15 6 4.9304 -6.9553 0.7979 16 8 5.6233 -6.8458 -0.1953 17 7 4.8649 -8.1345 1.4472 18 6 5.5890 -9.2256 0.9812 19 7 6.3507 -9.2180 -0.0676 20 6 6.9702 -10.3455 -0.3642 21 6 6.7115 -11.3560 0.4676 22 16 5.5995 -10.7748 1.7042 23 7 3.6647 -3.5705 0.9089 24 1 -0.4850 0.8400 0.0004 25 1 3.8711 -0.6780 -0.9023 26 1 3.8785 -0.6824 0.8776 27 1 5.2837 -2.6016 -1.7660 28 1 5.6846 -5.1081 -1.1006 29 1 3.6748 -5.9848 2.0414 30 1 4.3118 -8.2219 2.2393 31 1 7.6294 -10.4432 -1.2140 32 1 7.1136 -12.3558 0.3954 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172220680.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:47 Heat of formation + Delta-G solvation = 103.792642 kcal Electronic energy + Delta-G solvation = -19724.210697 eV Core-core repulsion = 16428.083134 eV Total energy + Delta-G solvation = -3296.127563 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.39293 -41.47757 -40.07576 -36.47443 -36.04181 -35.18989 -33.08985 -31.04583 -30.40454 -28.99332 -26.43757 -24.64894 -23.62166 -22.44698 -21.66375 -20.63607 -20.28860 -19.08126 -18.71602 -18.11787 -17.42718 -17.12914 -16.72096 -16.26536 -15.85700 -15.65617 -15.57098 -15.12169 -14.77702 -14.44808 -14.12663 -13.88864 -13.80404 -13.02279 -12.67456 -12.44395 -12.26401 -12.03673 -11.81585 -11.72400 -11.54658 -11.32899 -10.86910 -10.37845 -10.25818 -9.80431 -9.36123 -9.04558 -8.36781 -6.47059 -0.20873 -0.10967 0.72633 1.00630 1.07928 1.37758 1.40398 1.49576 1.58035 1.97154 1.99683 2.29652 2.37212 2.80457 2.96033 3.64387 3.92805 4.19216 4.50110 4.58748 4.61171 4.66872 4.78952 4.86292 4.91057 5.07179 5.24990 5.34263 5.51393 5.85256 6.00315 6.36111 6.41916 6.59047 6.89647 7.05513 7.15926 7.25724 8.80251 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.050552 B = 0.002725 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.749140 B =10273.260661 C =10614.704016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.229 1.229 6 H -0.279 1.279 7 C -0.547 4.547 8 H 0.027 0.973 9 C 0.239 3.761 10 N -0.343 5.343 11 C 0.064 3.936 12 C -0.294 4.294 13 C 0.284 3.716 14 N -0.628 5.628 15 C 0.709 3.291 16 O -0.542 6.542 17 N -0.625 5.625 18 C 0.253 3.747 19 N -0.525 5.525 20 C 0.041 3.959 21 C -0.262 4.262 22 S 0.192 5.808 23 N -0.343 5.343 24 H 0.272 0.728 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.211 0.789 28 H 0.165 0.835 29 H 0.424 0.576 30 H 0.439 0.561 31 H 0.192 0.808 32 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.625 -21.482 4.351 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.152 1.152 6 H -0.204 1.204 7 C -0.585 4.585 8 H 0.045 0.955 9 C 0.119 3.881 10 N -0.125 5.125 11 C -0.084 4.084 12 C -0.325 4.325 13 C 0.028 3.972 14 N -0.281 5.281 15 C 0.405 3.595 16 O -0.413 6.413 17 N -0.281 5.281 18 C -0.115 4.115 19 N -0.247 5.247 20 C -0.109 4.109 21 C -0.403 4.403 22 S 0.441 5.559 23 N -0.174 5.174 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.227 0.773 28 H 0.182 0.818 29 H 0.262 0.738 30 H 0.280 0.720 31 H 0.209 0.791 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 13.783 -20.503 4.860 25.179 hybrid contribution 0.074 0.321 -0.530 0.624 sum 13.857 -20.183 4.330 24.862 Atomic orbital electron populations 1.70049 1.08585 1.28793 1.50731 1.25920 0.95767 1.03538 0.93243 0.85621 0.79905 0.77238 0.79634 1.19004 1.15202 1.20429 1.21239 0.90515 0.93747 1.52961 0.95476 1.19917 0.94140 0.74266 0.99757 1.48515 1.34380 1.09986 1.19659 1.23211 0.94311 0.94531 0.96370 1.21710 1.11857 0.97215 1.01692 1.19017 0.97615 0.86221 0.94349 1.41197 1.49435 1.05915 1.31542 1.15694 0.80651 0.80036 0.83090 1.90970 1.42382 1.82077 1.25847 1.41683 1.48444 1.06201 1.31779 1.23644 0.98183 0.93424 0.96219 1.66527 1.11811 1.30001 1.16349 1.21944 1.00725 0.85960 1.02244 1.27355 1.06803 1.06484 0.99623 1.83691 1.44140 0.99321 1.28768 1.77309 1.25736 0.96504 1.17813 0.91895 0.89875 0.93605 0.77276 0.81785 0.73784 0.71977 0.79138 0.76823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16 2 C 0.01 0.80 5.47 84.65 0.46 1.26 16 3 Si 0.96 40.63 27.47 68.60 1.88 42.52 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.23 -8.41 6.54 99.48 0.65 -7.76 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -31.50 9.79 25.60 0.25 -31.25 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C 0.24 11.02 5.33 85.63 0.46 11.48 16 10 N -0.34 -15.42 3.67 -351.85 -1.29 -16.71 16 11 C 0.06 2.39 11.44 83.52 0.96 3.35 16 12 C -0.29 -11.52 9.61 22.11 0.21 -11.31 16 13 C 0.28 11.37 8.11 133.32 1.08 12.46 16 14 N -0.63 -19.12 5.45 -321.25 -1.75 -20.88 16 15 C 0.71 21.33 8.50 179.06 1.52 22.85 16 16 O -0.54 -20.69 12.10 -3.99 -0.05 -20.74 16 17 N -0.63 -13.01 5.41 -327.48 -1.77 -14.78 16 18 C 0.25 5.55 8.02 179.21 1.44 6.99 16 19 N -0.52 -14.26 8.65 -201.77 -1.74 -16.01 16 20 C 0.04 0.77 11.34 83.57 0.95 1.72 16 21 C -0.26 -3.14 11.35 66.73 0.76 -2.38 16 22 S 0.19 2.35 23.22 -56.49 -1.31 1.04 16 23 N -0.34 -15.85 12.42 -54.44 -0.68 -16.52 16 24 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 25 H 0.08 3.34 7.12 -2.39 -0.02 3.32 16 26 H 0.05 2.03 7.57 -2.39 -0.02 2.02 16 27 H 0.21 5.83 8.06 -2.91 -0.02 5.80 16 28 H 0.16 6.46 5.91 -2.91 -0.02 6.44 16 29 H 0.42 9.88 8.84 -92.70 -0.82 9.06 16 30 H 0.44 5.05 8.83 -92.70 -0.82 4.23 16 31 H 0.19 2.74 8.06 -2.91 -0.02 2.71 16 32 H 0.22 0.92 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -84.00 300.84 1.18 -82.82 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -0.49 Total: 21.92 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 8.08 Total: 15.17 kcal Atomic # 7 Polarization: -135.79 SS G_CDS: -6.94 Total: -142.73 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.88 Total: 42.52 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.31 Total: 1.04 kcal Total: -84.00 1.18 -82.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172220680.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.612 kcal (2) G-P(sol) polarization free energy of solvation -83.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds