Wall clock time and date at job start Tue Mar 31 2020 06:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81405 * 102.99840 * 2 1 4 4 C 1.50706 * 115.54609 * 65.19655 * 3 2 1 5 5 O 1.21274 * 119.99855 * 225.83896 * 4 3 2 6 6 N 1.34773 * 119.99868 * 45.84290 * 4 3 2 7 7 S 1.65607 * 119.99947 * 175.01333 * 6 4 3 8 8 O 1.42104 * 104.27594 * 181.07415 * 7 6 4 9 9 O 1.42094 * 104.27463 * 308.93226 * 7 6 4 10 10 C 1.81403 * 104.44626 * 65.00142 * 7 6 4 11 11 C 1.53000 * 109.47001 * 179.97438 * 10 7 6 12 12 C 1.50702 * 109.46925 * 179.97438 * 11 10 7 13 13 H 1.07994 * 120.00184 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99471 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99407 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00405 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.46983 * 90.00025 * 16 14 12 18 18 H 1.48504 * 109.47364 * 210.00096 * 16 14 12 19 19 H 1.48501 * 109.46942 * 330.00037 * 16 14 12 20 20 C 1.52993 * 117.50098 * 210.86509 * 3 2 1 21 21 C 1.52991 * 117.50252 * 279.52820 * 3 2 1 22 22 H 1.09001 * 109.46417 * 174.98382 * 1 2 3 23 23 H 1.08999 * 109.46943 * 294.98210 * 1 2 3 24 24 H 1.09003 * 109.46800 * 54.98907 * 1 2 3 25 25 H 0.97007 * 120.00287 * 355.29503 * 6 4 3 26 26 H 1.08998 * 109.46840 * 300.00244 * 10 7 6 27 27 H 1.09002 * 109.47081 * 59.99991 * 10 7 6 28 28 H 1.08994 * 109.47177 * 300.00450 * 11 10 7 29 29 H 1.09002 * 109.47037 * 60.00176 * 11 10 7 30 30 H 0.97010 * 119.99883 * 179.97438 * 15 14 12 31 31 H 1.09000 * 117.50149 * 215.00732 * 20 3 2 32 32 H 1.09007 * 117.49624 * 0.02794 * 20 3 2 33 33 H 1.09008 * 117.49993 * 359.97438 * 21 3 2 34 34 H 1.09000 * 117.50602 * 144.99275 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 1.8125 2.5291 1.2343 5 8 1.2587 3.6028 1.1284 6 7 2.0616 2.0169 2.4557 7 16 1.7245 2.9067 3.8112 8 8 2.1328 2.0736 4.8877 9 8 2.3538 4.1584 3.5741 10 6 -0.0803 3.0885 3.7959 11 6 -0.5212 3.9021 5.0143 12 6 -2.0205 4.0537 5.0013 13 1 -2.6009 3.6134 4.2040 14 6 -2.6513 4.7545 6.0073 15 7 -3.9597 4.8863 5.9962 16 14 -1.6474 5.5167 7.3859 17 1 -1.2562 6.8984 7.0078 18 1 -2.4607 5.5548 8.6279 19 1 -0.4272 4.7027 7.6181 20 6 3.5160 2.1939 -0.6962 21 6 2.1621 2.5065 -1.3383 22 1 -0.3632 -1.0238 -0.0899 23 1 -0.3633 0.4340 0.9315 24 1 -0.3633 0.5896 -0.8417 25 1 2.4422 1.1287 2.5409 26 1 -0.3859 3.6030 2.8849 27 1 -0.5450 2.1031 3.8300 28 1 -0.2156 3.3872 5.9250 29 1 -0.0565 4.8875 4.9807 30 1 -4.4036 5.3791 6.7041 31 1 4.0711 3.0252 -0.2615 32 1 4.1219 1.4123 -1.1547 33 1 1.8779 1.9304 -2.2190 34 1 1.8264 3.5434 -1.3262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191251965.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:11 Heat of formation + Delta-G solvation = -83.651201 kcal Electronic energy + Delta-G solvation = -19705.857656 eV Core-core repulsion = 16472.460367 eV Total energy + Delta-G solvation = -3233.397289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.51509 -37.02557 -36.62441 -35.81671 -34.58183 -33.98630 -31.52776 -29.22117 -26.13009 -25.59895 -22.96070 -21.41847 -21.21606 -19.47206 -18.72737 -17.88083 -16.96606 -16.49674 -15.84571 -15.59209 -15.23253 -15.14014 -14.62625 -14.30431 -13.79520 -13.76049 -13.71240 -12.98013 -12.86329 -12.59940 -12.09732 -11.96914 -11.92054 -11.81521 -11.72459 -11.32390 -11.27585 -11.12671 -10.96853 -10.77911 -10.45848 -10.21312 -10.07678 -9.67124 -9.38576 -8.67653 -8.17542 -6.17962 -4.19526 0.31094 1.03367 1.68197 2.17108 2.51039 3.17230 3.26102 3.33086 3.36617 3.74979 3.92931 4.06585 4.32958 4.34567 4.44383 4.81079 4.86549 4.88352 5.04276 5.13376 5.15624 5.42301 5.43487 5.47983 5.49705 5.67010 6.21534 6.48294 6.76419 6.89628 7.23543 7.51498 8.34506 8.82633 9.41136 10.94356 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023946 B = 0.004591 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.030239 B = 6096.814815 C = 6471.721443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.171 6.171 3 C -0.172 4.172 4 C 0.575 3.425 5 O -0.480 6.480 6 N -1.048 6.048 7 S 2.563 3.437 8 O -0.949 6.949 9 O -0.939 6.939 10 C -0.568 4.568 11 C -0.005 4.005 12 C -0.519 4.519 13 H 0.078 0.922 14 C 0.073 3.927 15 N -0.895 5.895 16 Si 0.869 3.131 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.262 1.262 20 C -0.112 4.112 21 C -0.123 4.123 22 H 0.109 0.891 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.434 0.566 26 H 0.137 0.863 27 H 0.128 0.872 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.267 0.733 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.162 -10.426 -15.001 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.058 5.942 3 C -0.287 4.287 4 C 0.358 3.642 5 O -0.352 6.352 6 N -0.810 5.810 7 S 2.663 3.337 8 O -0.940 6.940 9 O -0.929 6.929 10 C -0.703 4.703 11 C -0.045 4.045 12 C -0.558 4.558 13 H 0.096 0.904 14 C -0.130 4.130 15 N -0.532 5.532 16 Si 0.695 3.305 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.186 1.186 20 C -0.150 4.150 21 C -0.163 4.163 22 H 0.127 0.873 23 H 0.101 0.899 24 H 0.104 0.896 25 H 0.271 0.729 26 H 0.156 0.844 27 H 0.146 0.854 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.979 -10.164 -14.385 22.487 hybrid contribution -0.902 0.702 0.625 1.303 sum 13.078 -9.462 -13.760 21.211 Atomic orbital electron populations 1.23588 0.93662 1.07047 1.06197 1.86529 1.07982 1.02337 1.97359 1.23688 1.11902 0.96893 0.96214 1.19262 0.76562 0.84614 0.83808 1.90911 1.38064 1.19984 1.86201 1.55262 1.71057 1.32949 1.21734 1.06760 0.80319 0.74112 0.72483 1.93607 1.82131 1.67817 1.50445 1.93599 1.73975 1.42016 1.83308 1.30190 1.18405 1.10791 1.10902 1.19438 1.00421 0.94548 0.90066 1.20796 0.88269 1.35582 1.11145 0.90358 1.24966 0.94891 0.95409 0.97726 1.69879 1.08080 1.41379 1.33889 0.86926 0.80880 0.80635 0.82025 1.19587 1.20675 1.18639 1.23110 0.89319 1.03116 0.99463 1.23383 0.99005 1.02232 0.91701 0.87291 0.89891 0.89608 0.72891 0.84439 0.85412 0.94805 0.95124 0.92328 0.86767 0.86382 0.86505 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 10.73 101.05 1.08 0.00 16 2 S -0.17 -1.50 21.75 -107.50 -2.34 -3.83 16 3 C -0.17 -1.71 2.41 -91.78 -0.22 -1.93 16 4 C 0.58 7.79 6.99 -10.98 -0.08 7.72 16 5 O -0.48 -8.09 14.33 -9.86 -0.14 -8.23 16 6 N -1.05 -13.85 5.55 31.22 0.17 -13.67 16 7 S 2.56 45.12 5.10 -107.50 -0.55 44.57 16 8 O -0.95 -18.05 18.08 -57.54 -1.04 -19.09 16 9 O -0.94 -19.49 17.16 -64.29 -1.10 -20.59 16 10 C -0.57 -10.92 5.80 37.16 0.22 -10.70 16 11 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 12 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 13 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 14 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 15 N -0.89 -27.12 13.96 55.43 0.77 -26.34 16 16 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 20 C -0.11 -0.85 10.00 -26.70 -0.27 -1.11 16 21 C -0.12 -0.99 9.81 -26.70 -0.26 -1.26 16 22 H 0.11 0.68 8.14 -51.92 -0.42 0.26 16 23 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 24 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 25 H 0.43 4.43 8.31 -34.48 -0.29 4.15 16 26 H 0.14 2.63 7.00 -51.93 -0.36 2.27 16 27 H 0.13 2.13 8.14 -51.92 -0.42 1.71 16 28 H 0.03 0.80 7.20 -51.93 -0.37 0.42 16 29 H 0.03 0.74 7.57 -51.93 -0.39 0.34 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.12 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.12 1.07 7.72 -51.93 -0.40 0.67 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -35.49 320.17 -8.50 -43.99 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.36 Total: 1.96 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -0.07 Total: -20.48 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.95 Total: -40.02 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -2.28 Total: -47.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 43.62 SS G_CDS: -2.89 Total: 40.74 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.49 -8.50 -43.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191251965.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.660 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds