Wall clock time and date at job start Tue Mar 31 2020 06:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81405 * 102.99840 * 2 1 4 4 C 1.50706 * 115.54609 * 65.19655 * 3 2 1 5 5 O 1.21274 * 119.99855 * 225.83896 * 4 3 2 6 6 N 1.34773 * 119.99868 * 45.84290 * 4 3 2 7 7 S 1.65607 * 119.99947 * 175.01333 * 6 4 3 8 8 O 1.42104 * 104.27594 * 181.07415 * 7 6 4 9 9 O 1.42094 * 104.27463 * 308.93226 * 7 6 4 10 10 C 1.81403 * 104.44626 * 65.00142 * 7 6 4 11 11 C 1.53000 * 109.47001 * 179.97438 * 10 7 6 12 12 C 1.50702 * 109.46925 * 179.97438 * 11 10 7 13 13 H 1.07994 * 120.00184 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99471 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99407 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00405 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.46983 * 90.00025 * 16 14 12 18 18 H 1.48504 * 109.47364 * 210.00096 * 16 14 12 19 19 H 1.48501 * 109.46942 * 330.00037 * 16 14 12 20 20 C 1.52993 * 117.50098 * 210.86509 * 3 2 1 21 21 C 1.52991 * 117.50252 * 279.52820 * 3 2 1 22 22 H 1.09001 * 109.46417 * 174.98382 * 1 2 3 23 23 H 1.08999 * 109.46943 * 294.98210 * 1 2 3 24 24 H 1.09003 * 109.46800 * 54.98907 * 1 2 3 25 25 H 0.97007 * 120.00287 * 355.29503 * 6 4 3 26 26 H 1.08998 * 109.46840 * 300.00244 * 10 7 6 27 27 H 1.09002 * 109.47081 * 59.99991 * 10 7 6 28 28 H 1.08994 * 109.47177 * 300.00450 * 11 10 7 29 29 H 1.09002 * 109.47037 * 60.00176 * 11 10 7 30 30 H 0.97010 * 119.99883 * 179.97438 * 15 14 12 31 31 H 1.09000 * 117.50149 * 215.00732 * 20 3 2 32 32 H 1.09007 * 117.49624 * 0.02794 * 20 3 2 33 33 H 1.09008 * 117.49993 * 359.97438 * 21 3 2 34 34 H 1.09000 * 117.50602 * 144.99275 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 1.8125 2.5291 1.2343 5 8 1.2587 3.6028 1.1284 6 7 2.0616 2.0169 2.4557 7 16 1.7245 2.9067 3.8112 8 8 2.1328 2.0736 4.8877 9 8 2.3538 4.1584 3.5741 10 6 -0.0803 3.0885 3.7959 11 6 -0.5212 3.9021 5.0143 12 6 -2.0205 4.0537 5.0013 13 1 -2.6009 3.6134 4.2040 14 6 -2.6513 4.7545 6.0073 15 7 -3.9597 4.8863 5.9962 16 14 -1.6474 5.5167 7.3859 17 1 -1.2562 6.8984 7.0078 18 1 -2.4607 5.5548 8.6279 19 1 -0.4272 4.7027 7.6181 20 6 3.5160 2.1939 -0.6962 21 6 2.1621 2.5065 -1.3383 22 1 -0.3632 -1.0238 -0.0899 23 1 -0.3633 0.4340 0.9315 24 1 -0.3633 0.5896 -0.8417 25 1 2.4422 1.1287 2.5409 26 1 -0.3859 3.6030 2.8849 27 1 -0.5450 2.1031 3.8300 28 1 -0.2156 3.3872 5.9250 29 1 -0.0565 4.8875 4.9807 30 1 -4.4036 5.3791 6.7041 31 1 4.0711 3.0252 -0.2615 32 1 4.1219 1.4123 -1.1547 33 1 1.8779 1.9304 -2.2190 34 1 1.8264 3.5434 -1.3262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191251965.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:10 Heat of formation + Delta-G solvation = -110.229250 kcal Electronic energy + Delta-G solvation = -19707.010167 eV Core-core repulsion = 16472.460367 eV Total energy + Delta-G solvation = -3234.549799 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.59313 -38.44845 -37.49289 -37.34762 -36.01705 -35.72954 -33.56052 -29.83508 -28.03027 -26.60838 -23.56636 -23.27498 -22.26663 -20.84022 -19.69740 -19.54771 -18.71512 -17.59172 -17.13105 -16.78219 -16.53461 -16.36161 -16.11504 -15.51931 -15.36625 -14.87055 -14.45870 -14.41274 -13.99536 -13.86147 -13.65598 -13.49397 -13.37713 -13.15927 -13.09435 -12.74728 -12.41577 -12.35505 -12.22840 -12.01499 -11.82199 -11.73812 -11.64531 -11.27086 -10.91429 -10.87363 -8.84675 -8.39442 -6.46176 -1.14092 0.27341 0.79980 1.16807 1.31313 1.32169 1.42436 1.46883 2.27423 2.37501 2.51452 2.78596 2.94252 3.06344 3.35179 3.67793 3.72423 3.87984 3.91254 4.24452 4.30284 4.44639 4.46032 4.61482 4.85962 4.88435 4.95721 4.99438 5.08695 5.41441 5.46348 6.12049 6.17699 6.58910 7.18068 8.76191 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023946 B = 0.004591 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.030239 B = 6096.814815 C = 6471.721443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.155 6.155 3 C -0.191 4.191 4 C 0.572 3.428 5 O -0.517 6.517 6 N -1.033 6.033 7 S 2.600 3.400 8 O -0.960 6.960 9 O -0.969 6.969 10 C -0.578 4.578 11 C -0.014 4.014 12 C -0.530 4.530 13 H 0.047 0.953 14 C 0.016 3.984 15 N -0.938 5.938 16 Si 0.926 3.074 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.246 1.246 20 C -0.096 4.096 21 C -0.118 4.118 22 H 0.126 0.874 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.449 0.551 26 H 0.133 0.867 27 H 0.149 0.851 28 H 0.042 0.958 29 H 0.030 0.970 30 H 0.271 0.729 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.189 -11.587 -15.628 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.074 5.926 3 C -0.306 4.306 4 C 0.356 3.644 5 O -0.391 6.391 6 N -0.799 5.799 7 S 2.698 3.302 8 O -0.951 6.951 9 O -0.959 6.959 10 C -0.710 4.710 11 C -0.054 4.054 12 C -0.569 4.569 13 H 0.066 0.934 14 C -0.183 4.183 15 N -0.578 5.578 16 Si 0.748 3.252 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.169 1.169 20 C -0.134 4.134 21 C -0.157 4.157 22 H 0.145 0.855 23 H 0.089 0.911 24 H 0.109 0.891 25 H 0.290 0.710 26 H 0.152 0.848 27 H 0.167 0.833 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 16.009 -11.353 -15.008 24.707 hybrid contribution -1.563 0.982 0.696 1.973 sum 14.446 -10.370 -14.312 22.827 Atomic orbital electron populations 1.23701 0.93499 1.08227 1.05788 1.86484 1.08212 1.00701 1.97245 1.23692 1.14334 0.97626 0.94929 1.19978 0.75480 0.84318 0.84591 1.90898 1.39738 1.21835 1.86589 1.54818 1.70826 1.33493 1.20743 1.05437 0.78593 0.73481 0.72661 1.93587 1.81738 1.67917 1.51816 1.93562 1.74042 1.44174 1.84130 1.30177 1.21085 1.11180 1.08583 1.19388 0.97745 0.95582 0.92642 1.21093 0.90574 1.35018 1.10195 0.93447 1.25868 0.95940 0.96020 1.00496 1.70006 1.09879 1.42695 1.35206 0.86014 0.79986 0.80150 0.79053 1.18744 1.19544 1.16919 1.23311 0.88796 1.03451 0.97884 1.23495 0.99326 1.01598 0.91316 0.85535 0.91138 0.89078 0.70975 0.84838 0.83314 0.93976 0.95170 0.91989 0.87021 0.83757 0.84169 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 10.73 113.37 1.22 -0.83 16 2 S -0.16 -2.33 21.75 -56.49 -1.23 -3.56 16 3 C -0.19 -3.41 2.41 -11.54 -0.03 -3.44 16 4 C 0.57 14.88 6.99 87.66 0.61 15.50 16 5 O -0.52 -17.37 14.33 11.74 0.17 -17.20 16 6 N -1.03 -25.82 5.55 -173.54 -0.96 -26.79 16 7 S 2.60 88.86 5.10 -56.49 -0.29 88.58 16 8 O -0.96 -34.86 18.08 -127.65 -2.31 -37.17 16 9 O -0.97 -39.60 17.16 -121.20 -2.08 -41.68 16 10 C -0.58 -22.12 5.80 71.98 0.42 -21.70 16 11 C -0.01 -0.69 4.05 29.85 0.12 -0.57 16 12 C -0.53 -30.52 9.66 25.60 0.25 -30.27 16 13 H 0.05 2.93 7.99 -2.91 -0.02 2.90 16 14 C 0.02 0.91 5.47 84.66 0.46 1.38 16 15 N -0.94 -58.11 13.96 21.45 0.30 -57.81 16 16 Si 0.93 44.00 27.47 68.60 1.88 45.89 16 17 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 20 C -0.10 -1.20 10.00 30.61 0.31 -0.89 16 21 C -0.12 -1.65 9.81 30.61 0.30 -1.35 16 22 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.45 8.25 8.31 -96.73 -0.80 7.45 16 26 H 0.13 5.22 7.00 -2.39 -0.02 5.20 16 27 H 0.15 4.91 8.14 -2.39 -0.02 4.89 16 28 H 0.04 1.94 7.20 -2.39 -0.02 1.92 16 29 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 30 H 0.27 15.58 8.31 -92.70 -0.77 14.80 16 31 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.14 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.14 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.10 1.80 7.72 -2.39 -0.02 1.78 16 Total: -1.00 -76.82 320.17 -0.60 -77.41 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.26 Total: 14.49 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 3.66 Total: -42.17 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -0.66 Total: -84.60 kcal Atomic # 8 Polarization: -91.83 SS G_CDS: -4.22 Total: -96.05 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.89 kcal Atomic # 16 Polarization: 86.54 SS G_CDS: -1.52 Total: 85.02 kcal Total: -76.82 -0.60 -77.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191251965.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.815 kcal (2) G-P(sol) polarization free energy of solvation -76.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds