Wall clock time and date at job start Tue Mar 31 2020 06:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86795 * 120.00227 * 2 1 4 4 H 1.48506 * 109.47498 * 270.00128 * 3 2 1 5 5 H 1.48501 * 109.47074 * 30.00079 * 3 2 1 6 6 H 1.48497 * 109.47405 * 150.00048 * 3 2 1 7 7 C 1.39932 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 186.98145 * 7 2 1 9 9 C 1.41049 * 119.99669 * 6.98029 * 7 2 1 10 10 C 1.40724 * 120.30680 * 32.40081 * 9 7 2 11 11 C 1.36449 * 119.94816 * 180.02562 * 10 9 7 12 12 C 1.38908 * 120.60028 * 359.72650 * 11 10 9 13 13 C 1.38166 * 120.62226 * 0.55991 * 12 11 10 14 14 C 1.38752 * 120.02300 * 359.44242 * 13 12 11 15 15 N 1.38739 * 120.28843 * 180.26086 * 14 13 12 16 16 S 1.65591 * 120.00341 * 35.88730 * 15 14 13 17 17 O 1.42101 * 106.40197 * 173.21895 * 16 15 14 18 18 O 1.42107 * 106.40315 * 306.13592 * 16 15 14 19 19 C 1.76198 * 107.21976 * 59.67807 * 16 15 14 20 20 C 1.34516 * 125.78565 * 89.71699 * 19 16 15 21 21 C 1.41385 * 106.83544 * 179.89084 * 20 19 16 22 22 C 1.34509 * 106.84405 * 0.37117 * 21 20 19 23 23 O 1.34303 * 108.42297 * 359.77070 * 22 21 20 24 24 H 0.96998 * 120.00097 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.02941 * 0.02562 * 10 9 7 26 26 H 1.08006 * 119.69768 * 180.02562 * 11 10 9 27 27 H 1.07992 * 119.68883 * 180.27482 * 12 11 10 28 28 H 1.07994 * 119.98478 * 179.72358 * 13 12 11 29 29 H 0.97005 * 119.98991 * 215.88961 * 15 14 13 30 30 H 1.08000 * 126.58180 * 0.02562 * 20 19 16 31 31 H 1.08002 * 126.57825 * 180.16334 * 21 20 19 32 32 H 1.08003 * 125.79149 * 179.79418 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4401 0.7000 7 6 2.0085 -1.2118 -0.0005 8 1 3.0824 -1.2154 0.1131 9 6 1.3110 -2.4287 -0.1495 10 6 0.1433 -2.4867 -0.9328 11 6 -0.5259 -3.6677 -1.0715 12 6 -0.0625 -4.8203 -0.4500 13 6 1.0780 -4.7897 0.3293 14 6 1.7788 -3.6027 0.4879 15 7 2.9277 -3.5669 1.2648 16 16 3.9593 -4.8622 1.2777 17 8 5.0982 -4.4606 2.0267 18 8 3.1726 -5.9984 1.6086 19 6 4.5125 -5.1048 -0.3775 20 6 5.5972 -4.5377 -0.9354 21 6 5.6660 -5.0080 -2.2669 22 6 4.6148 -5.8280 -2.4455 23 8 3.9196 -5.8829 -1.2977 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2228 -1.5972 -1.4238 26 1 -1.4214 -3.7077 -1.6740 27 1 -0.6012 -5.7480 -0.5734 28 1 1.4266 -5.6910 0.8114 29 1 3.1266 -2.7830 1.8005 30 1 6.2848 -3.8557 -0.4573 31 1 6.4166 -4.7547 -3.0010 32 1 4.3713 -6.3534 -3.3571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193359146.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:52 Heat of formation + Delta-G solvation = -32.022740 kcal Electronic energy + Delta-G solvation = -21392.308020 eV Core-core repulsion = 18025.705558 eV Total energy + Delta-G solvation = -3366.602462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.41116 -38.15849 -36.89914 -35.59977 -34.07829 -33.67265 -32.99025 -29.74465 -29.68037 -28.06895 -25.24675 -22.24733 -21.78565 -21.40966 -20.81464 -19.22190 -18.15558 -17.56724 -16.99763 -16.54729 -15.90795 -15.73496 -15.21321 -14.77713 -14.34781 -13.68036 -13.44058 -12.88206 -12.86544 -12.70220 -12.66559 -12.31410 -11.90883 -11.72756 -11.64583 -11.31745 -11.24794 -11.21809 -10.97975 -10.56609 -10.13489 -9.97427 -9.75671 -9.36807 -9.32008 -8.96625 -7.48921 -7.17572 -6.78367 -4.50818 0.56614 1.38216 2.48514 2.67557 2.87114 3.01281 3.03484 3.10231 3.13945 3.48173 3.84525 3.97219 4.55297 4.82408 4.94649 5.02708 5.46612 5.52686 5.71171 5.87449 6.08426 6.25580 6.36530 6.44775 6.70716 6.91243 6.95647 7.04298 7.11383 7.37345 7.55407 7.84385 7.95006 8.01007 8.12670 8.48977 8.72139 8.81192 10.11577 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.006784 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.839649 B = 4126.380876 C = 4575.614624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.109 3.891 10 C -0.136 4.136 11 C -0.115 4.115 12 C -0.207 4.207 13 C -0.131 4.131 14 C 0.019 3.981 15 N -1.009 6.009 16 S 2.701 3.299 17 O -0.960 6.960 18 O -0.943 6.943 19 C -0.561 4.561 20 C -0.093 4.093 21 C -0.237 4.237 22 C 0.006 3.994 23 O -0.113 6.113 24 H 0.281 0.719 25 H 0.123 0.877 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.132 0.868 29 H 0.423 0.577 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.575 -4.592 -3.819 8.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.103 3.897 10 C -0.157 4.157 11 C -0.134 4.134 12 C -0.227 4.227 13 C -0.152 4.152 14 C -0.078 4.078 15 N -0.762 5.762 16 S 2.787 3.213 17 O -0.950 6.950 18 O -0.933 6.933 19 C -0.690 4.690 20 C -0.114 4.114 21 C -0.257 4.257 22 C -0.066 4.066 23 O -0.005 6.005 24 H 0.092 0.908 25 H 0.140 0.860 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.149 0.851 29 H 0.262 0.738 30 H 0.180 0.820 31 H 0.173 0.827 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.435 -5.287 -3.110 8.890 hybrid contribution 0.711 1.592 -0.799 1.918 sum 7.146 -3.695 -3.908 8.944 Atomic orbital electron populations 1.69785 1.07339 1.29243 1.36035 1.25883 0.94890 1.01191 0.92361 0.86261 0.80376 0.80542 0.79288 1.19382 1.20193 1.18543 1.19382 0.95144 0.90086 1.44655 0.90359 1.17521 0.92648 0.91229 0.88260 1.21027 0.97449 0.96651 1.00533 1.20560 0.98873 0.93698 1.00309 1.20293 0.99314 0.97306 1.05826 1.21311 0.95995 0.97039 1.00859 1.17380 0.91359 0.96886 1.02193 1.52244 1.31732 1.36356 1.55913 1.02649 0.72607 0.74027 0.72020 1.93580 1.51387 1.82908 1.67097 1.93526 1.68559 1.50121 1.81102 1.35941 1.07109 1.08346 1.17639 1.21924 0.96422 0.98484 0.94617 1.22003 1.02360 1.03631 0.97663 1.24636 0.92231 0.99828 0.89926 1.84258 1.45421 1.52578 1.18243 0.90774 0.85971 0.89101 0.88665 0.85074 0.73828 0.82002 0.82682 0.77358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.45 10.90 55.55 0.61 -18.85 16 2 C 0.07 1.74 5.30 -17.32 -0.09 1.65 16 3 Si 0.91 17.77 29.57 -169.99 -5.03 12.74 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 7 C -0.46 -11.21 8.28 -37.88 -0.31 -11.53 16 8 H 0.08 1.80 7.57 -52.49 -0.40 1.40 16 9 C 0.11 2.70 5.54 -106.63 -0.59 2.11 16 10 C -0.14 -3.33 8.58 -39.29 -0.34 -3.66 16 11 C -0.11 -2.56 9.97 -39.98 -0.40 -2.96 16 12 C -0.21 -4.51 10.04 -39.36 -0.40 -4.91 16 13 C -0.13 -2.94 9.26 -39.42 -0.36 -3.30 16 14 C 0.02 0.44 6.24 -83.29 -0.52 -0.08 16 15 N -1.01 -20.10 5.37 32.72 0.18 -19.93 16 16 S 2.70 50.34 5.66 -107.50 -0.61 49.73 16 17 O -0.96 -18.34 17.83 -57.17 -1.02 -19.36 16 18 O -0.94 -19.40 15.02 -57.22 -0.86 -20.26 16 19 C -0.56 -9.98 7.17 29.42 0.21 -9.77 16 20 C -0.09 -1.46 10.63 -39.70 -0.42 -1.88 16 21 C -0.24 -3.16 10.91 -39.70 -0.43 -3.60 16 22 C 0.01 0.09 12.09 29.41 0.36 0.44 16 23 O -0.11 -1.98 10.65 5.70 0.06 -1.92 16 24 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 25 H 0.12 3.06 6.36 -52.49 -0.33 2.73 16 26 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 27 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.13 2.88 5.20 -52.49 -0.27 2.61 16 29 H 0.42 7.81 8.25 -34.47 -0.28 7.53 16 30 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 31 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.21 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 296.29 15.07 4.47 4.47 Total: -1.00 -29.95 296.29 -8.04 -37.99 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -2.54 Total: 12.87 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: -3.30 Total: -37.49 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.78 Total: -38.77 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.82 Total: -41.53 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 16 Polarization: 50.34 SS G_CDS: -0.61 Total: 49.73 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.95 -8.04 -37.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193359146.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.969 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds