Wall clock time and date at job start Tue Mar 31 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86795 * 120.00227 * 2 1 4 4 H 1.48506 * 109.47498 * 270.00128 * 3 2 1 5 5 H 1.48501 * 109.47074 * 30.00079 * 3 2 1 6 6 H 1.48497 * 109.47405 * 150.00048 * 3 2 1 7 7 C 1.39932 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 186.98145 * 7 2 1 9 9 C 1.41049 * 119.99669 * 6.98029 * 7 2 1 10 10 C 1.40724 * 120.30680 * 32.40081 * 9 7 2 11 11 C 1.36449 * 119.94816 * 180.02562 * 10 9 7 12 12 C 1.38908 * 120.60028 * 359.72650 * 11 10 9 13 13 C 1.38166 * 120.62226 * 0.55991 * 12 11 10 14 14 C 1.38752 * 120.02300 * 359.44242 * 13 12 11 15 15 N 1.38739 * 120.28843 * 180.26086 * 14 13 12 16 16 S 1.65591 * 120.00341 * 35.88730 * 15 14 13 17 17 O 1.42101 * 106.40197 * 173.21895 * 16 15 14 18 18 O 1.42107 * 106.40315 * 306.13592 * 16 15 14 19 19 C 1.76198 * 107.21976 * 59.67807 * 16 15 14 20 20 C 1.34516 * 125.78565 * 89.71699 * 19 16 15 21 21 C 1.41385 * 106.83544 * 179.89084 * 20 19 16 22 22 C 1.34509 * 106.84405 * 0.37117 * 21 20 19 23 23 O 1.34303 * 108.42297 * 359.77070 * 22 21 20 24 24 H 0.96998 * 120.00097 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.02941 * 0.02562 * 10 9 7 26 26 H 1.08006 * 119.69768 * 180.02562 * 11 10 9 27 27 H 1.07992 * 119.68883 * 180.27482 * 12 11 10 28 28 H 1.07994 * 119.98478 * 179.72358 * 13 12 11 29 29 H 0.97005 * 119.98991 * 215.88961 * 15 14 13 30 30 H 1.08000 * 126.58180 * 0.02562 * 20 19 16 31 31 H 1.08002 * 126.57825 * 180.16334 * 21 20 19 32 32 H 1.08003 * 125.79149 * 179.79418 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4401 0.7000 7 6 2.0085 -1.2118 -0.0005 8 1 3.0824 -1.2154 0.1131 9 6 1.3110 -2.4287 -0.1495 10 6 0.1433 -2.4867 -0.9328 11 6 -0.5259 -3.6677 -1.0715 12 6 -0.0625 -4.8203 -0.4500 13 6 1.0780 -4.7897 0.3293 14 6 1.7788 -3.6027 0.4879 15 7 2.9277 -3.5669 1.2648 16 16 3.9593 -4.8622 1.2777 17 8 5.0982 -4.4606 2.0267 18 8 3.1726 -5.9984 1.6086 19 6 4.5125 -5.1048 -0.3775 20 6 5.5972 -4.5377 -0.9354 21 6 5.6660 -5.0080 -2.2669 22 6 4.6148 -5.8280 -2.4455 23 8 3.9196 -5.8829 -1.2977 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2228 -1.5972 -1.4238 26 1 -1.4214 -3.7077 -1.6740 27 1 -0.6012 -5.7480 -0.5734 28 1 1.4266 -5.6910 0.8114 29 1 3.1266 -2.7830 1.8005 30 1 6.2848 -3.8557 -0.4573 31 1 6.4166 -4.7547 -3.0010 32 1 4.3713 -6.3534 -3.3571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193359146.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:51 Heat of formation + Delta-G solvation = -51.854332 kcal Electronic energy + Delta-G solvation = -21393.167982 eV Core-core repulsion = 18025.705558 eV Total energy + Delta-G solvation = -3367.462424 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.59026 -39.88953 -38.46167 -37.16276 -35.75690 -35.41297 -34.16537 -31.49008 -30.88390 -29.80255 -27.02915 -23.52508 -23.13861 -22.92594 -22.52745 -20.59661 -19.58307 -19.26534 -18.59835 -18.17501 -17.13143 -17.01186 -16.88748 -16.34890 -16.02564 -15.20913 -14.84328 -14.54957 -14.39789 -14.01089 -13.95703 -13.74403 -13.47166 -13.38908 -13.29140 -12.94813 -12.89065 -12.69325 -12.62216 -12.14891 -11.82395 -11.50306 -11.15833 -11.09061 -11.05338 -10.12651 -9.29642 -8.92803 -8.52247 -6.33484 -0.89240 0.14713 0.96114 1.07955 1.41054 1.41901 1.51492 1.54439 1.80884 2.16316 2.22549 2.50983 2.79175 3.47042 3.67127 3.86245 3.94137 4.38736 4.45609 4.57405 4.65847 4.66801 4.82320 5.02464 5.16125 5.27485 5.32219 5.36143 5.64739 5.78725 5.80594 6.10864 6.17739 6.26275 6.35204 6.70249 6.93127 7.02231 8.39727 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.006784 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.839649 B = 4126.380876 C = 4575.614624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.035 3.965 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.487 4.487 8 H 0.082 0.918 9 C 0.080 3.920 10 C -0.159 4.159 11 C -0.118 4.118 12 C -0.206 4.206 13 C -0.145 4.145 14 C 0.023 3.977 15 N -1.016 6.016 16 S 2.730 3.270 17 O -0.965 6.965 18 O -0.967 6.967 19 C -0.601 4.601 20 C -0.092 4.092 21 C -0.241 4.241 22 C 0.014 3.986 23 O -0.139 6.139 24 H 0.286 0.714 25 H 0.108 0.892 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.135 0.865 29 H 0.426 0.574 30 H 0.178 0.822 31 H 0.192 0.808 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.870 -4.877 -5.056 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.179 4.179 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.518 4.518 8 H 0.100 0.900 9 C 0.075 3.925 10 C -0.179 4.179 11 C -0.137 4.137 12 C -0.226 4.226 13 C -0.166 4.166 14 C -0.074 4.074 15 N -0.769 5.769 16 S 2.819 3.181 17 O -0.955 6.955 18 O -0.957 6.957 19 C -0.733 4.733 20 C -0.113 4.113 21 C -0.260 4.260 22 C -0.057 4.057 23 O -0.033 6.033 24 H 0.097 0.903 25 H 0.126 0.874 26 H 0.133 0.867 27 H 0.141 0.859 28 H 0.153 0.847 29 H 0.265 0.735 30 H 0.195 0.805 31 H 0.209 0.791 32 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 7.698 -5.559 -4.312 10.428 hybrid contribution 0.396 1.513 -0.498 1.641 sum 8.094 -4.046 -4.810 10.248 Atomic orbital electron populations 1.69853 1.08641 1.30237 1.37054 1.26650 0.95566 1.04081 0.91603 0.85262 0.79135 0.76442 0.79306 1.18987 1.19782 1.18036 1.19584 0.95428 0.90721 1.46053 0.90025 1.17815 0.93371 0.92166 0.89162 1.21041 0.98380 0.97033 1.01438 1.20802 0.99458 0.93090 1.00378 1.20641 0.98948 0.98240 1.04742 1.21509 0.96524 0.97107 1.01507 1.17436 0.92022 0.96480 1.01455 1.52268 1.31980 1.36615 1.56011 1.01247 0.71910 0.72900 0.72059 1.93570 1.51175 1.82997 1.67793 1.93483 1.69314 1.50796 1.82137 1.35354 1.08874 1.11324 1.17724 1.22398 0.95517 0.97586 0.95828 1.22485 1.03194 1.03089 0.97188 1.25697 0.91300 0.98971 0.89774 1.84226 1.46594 1.53046 1.19438 0.90346 0.87439 0.86651 0.85914 0.84704 0.73518 0.80494 0.79057 0.72822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.37 10.90 21.83 0.24 -41.13 16 2 C 0.04 1.67 5.30 85.25 0.45 2.12 16 3 Si 0.98 36.41 29.57 68.60 2.03 38.44 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 7 C -0.49 -24.09 8.28 23.37 0.19 -23.89 16 8 H 0.08 3.81 7.57 -2.91 -0.02 3.79 16 9 C 0.08 4.05 5.54 -21.17 -0.12 3.94 16 10 C -0.16 -7.89 8.58 22.46 0.19 -7.69 16 11 C -0.12 -5.22 9.97 22.01 0.22 -5.00 16 12 C -0.21 -8.78 10.04 22.41 0.22 -8.56 16 13 C -0.15 -6.52 9.26 22.38 0.21 -6.31 16 14 C 0.02 1.08 6.24 38.99 0.24 1.32 16 15 N -1.02 -40.98 5.37 -50.39 -0.27 -41.25 16 16 S 2.73 101.60 5.66 -56.49 -0.32 101.28 16 17 O -0.97 -36.47 17.83 -128.00 -2.28 -38.75 16 18 O -0.97 -39.94 15.02 -127.96 -1.92 -41.86 16 19 C -0.60 -20.84 7.17 66.97 0.48 -20.36 16 20 C -0.09 -2.70 10.63 22.19 0.24 -2.47 16 21 C -0.24 -5.61 10.91 22.19 0.24 -5.37 16 22 C 0.01 0.34 12.09 66.97 0.81 1.15 16 23 O -0.14 -4.69 10.65 -2.53 -0.03 -4.72 16 24 H 0.29 13.02 8.30 -92.71 -0.77 12.25 16 25 H 0.11 5.57 6.36 -2.91 -0.02 5.55 16 26 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 27 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 28 H 0.14 5.93 5.20 -2.91 -0.02 5.91 16 29 H 0.43 16.08 8.25 -96.74 -0.80 15.28 16 30 H 0.18 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.26 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -64.85 296.29 1.21 -63.64 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.38 Total: 35.48 kcal Atomic # 6 Polarization: -74.51 SS G_CDS: 3.38 Total: -71.12 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -0.03 Total: -82.38 kcal Atomic # 8 Polarization: -81.10 SS G_CDS: -4.23 Total: -85.33 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Atomic # 16 Polarization: 101.60 SS G_CDS: -0.32 Total: 101.28 kcal Total: -64.85 1.21 -63.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193359146.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.788 kcal (2) G-P(sol) polarization free energy of solvation -64.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds