Wall clock time and date at job start Tue Mar 31 2020 06:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86796 * 120.00010 * 2 1 4 4 H 1.48495 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47131 * 299.99918 * 3 2 1 6 6 H 1.48500 * 109.47037 * 60.00029 * 3 2 1 7 7 C 1.39927 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00054 * 195.74727 * 7 2 1 9 9 C 1.41043 * 119.99844 * 15.73756 * 7 2 1 10 10 C 1.40730 * 120.31024 * 26.74598 * 9 7 2 11 11 C 1.36444 * 119.95580 * 179.97438 * 10 9 7 12 12 C 1.38896 * 120.59725 * 0.02562 * 11 10 9 13 13 C 1.38165 * 120.62611 * 359.97438 * 12 11 10 14 14 C 1.38746 * 120.02488 * 0.25599 * 13 12 11 15 15 N 1.38737 * 120.29259 * 179.72112 * 14 13 12 16 16 S 1.65594 * 120.00282 * 35.54063 * 15 14 13 17 17 O 1.42101 * 106.40493 * 173.49712 * 16 15 14 18 18 O 1.42101 * 106.40259 * 306.41885 * 16 15 14 19 19 C 1.76201 * 107.21724 * 59.95647 * 16 15 14 20 20 C 1.39873 * 126.04148 * 269.69413 * 19 16 15 21 21 N 1.30836 * 108.20271 * 179.81910 * 20 19 16 22 22 N 1.40078 * 108.20486 * 0.43903 * 21 20 19 23 23 H 0.97003 * 126.03786 * 179.69582 * 22 21 20 24 24 C 1.34951 * 107.92640 * 359.71850 * 22 21 20 25 25 H 0.96998 * 120.00074 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.02208 * 359.95204 * 10 9 7 27 27 H 1.08000 * 119.70018 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.69002 * 180.02562 * 12 11 10 29 29 H 1.07998 * 119.98760 * 179.97438 * 13 12 11 30 30 H 0.97005 * 119.99701 * 215.53706 * 15 14 13 31 31 H 1.08008 * 125.89270 * 359.97438 * 20 19 16 32 32 H 1.08006 * 126.12500 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3964 1.2125 7 6 2.0084 -1.2118 -0.0005 8 1 3.0580 -1.2294 0.2533 9 6 1.3429 -2.4102 -0.3324 10 6 0.2142 -2.3866 -1.1726 11 6 -0.4238 -3.5503 -1.4894 12 6 0.0298 -4.7641 -0.9892 13 6 1.1355 -4.8155 -0.1623 14 6 1.8011 -3.6474 0.1804 15 7 2.9085 -3.6920 1.0150 16 16 3.9618 -4.9666 0.9257 17 8 5.0508 -4.6479 1.7812 18 8 3.1797 -6.1443 1.0691 19 6 4.6083 -4.9951 -0.7131 20 6 4.0669 -5.6904 -1.7994 21 7 4.8206 -5.4658 -2.8451 22 7 5.8725 -4.6274 -2.4543 23 1 6.5853 -4.3018 -3.0261 24 6 5.7195 -4.3530 -1.1419 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1470 -1.4479 -1.5661 27 1 -1.2894 -3.5275 -2.1349 28 1 -0.4861 -5.6764 -1.2497 29 1 1.4791 -5.7649 0.2212 30 1 3.0657 -2.9764 1.6508 31 1 3.1786 -6.3044 -1.7790 32 1 6.3677 -3.7318 -0.5415 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193359995.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:44 Heat of formation + Delta-G solvation = 21.161374 kcal Electronic energy + Delta-G solvation = -21336.333535 eV Core-core repulsion = 18004.330060 eV Total energy + Delta-G solvation = -3332.003475 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09868 -38.08082 -36.67225 -35.37883 -33.98905 -33.63884 -31.62559 -30.26168 -29.67456 -27.98226 -25.21305 -22.46727 -21.57218 -21.35408 -20.72736 -19.06159 -18.23040 -17.49100 -16.79705 -16.48913 -15.59235 -15.13846 -14.77888 -14.62491 -14.46797 -14.23122 -13.40386 -12.98756 -12.83816 -12.59359 -12.21314 -11.79959 -11.61348 -11.57504 -11.50524 -11.29505 -11.16618 -10.93049 -10.56800 -10.52310 -10.02500 -9.76061 -9.69410 -9.30723 -9.28182 -9.22481 -7.49862 -7.14166 -6.79487 -4.44361 0.94683 1.67332 2.47533 2.69010 2.81322 2.91870 3.00438 3.03724 3.14038 3.69406 3.83510 4.23375 4.53842 4.59453 4.78172 5.14834 5.46968 5.53133 5.69721 6.19160 6.30562 6.45421 6.49411 6.77087 6.96054 7.08967 7.10438 7.15576 7.42732 7.46791 7.59395 7.90480 8.00422 8.08170 8.16825 8.53225 8.74530 8.86548 10.08685 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.006783 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.029199 B = 4127.218764 C = 4582.764090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.107 3.893 10 C -0.145 4.145 11 C -0.115 4.115 12 C -0.213 4.213 13 C -0.137 4.137 14 C 0.026 3.974 15 N -1.023 6.023 16 S 2.714 3.286 17 O -0.983 6.983 18 O -0.961 6.961 19 C -0.801 4.801 20 C 0.148 3.852 21 N -0.297 5.297 22 N -0.467 5.467 23 H 0.440 0.560 24 C 0.182 3.818 25 H 0.281 0.719 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.132 0.868 30 H 0.419 0.581 31 H 0.197 0.803 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 -3.156 -2.392 9.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.490 4.490 8 H 0.097 0.903 9 C 0.101 3.899 10 C -0.165 4.165 11 C -0.134 4.134 12 C -0.234 4.234 13 C -0.159 4.159 14 C -0.071 4.071 15 N -0.774 5.774 16 S 2.804 3.196 17 O -0.973 6.973 18 O -0.951 6.951 19 C -0.899 4.899 20 C -0.042 4.042 21 N -0.118 5.118 22 N -0.171 5.171 23 H 0.285 0.715 24 C 0.027 3.973 25 H 0.092 0.908 26 H 0.137 0.863 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.150 0.850 30 H 0.256 0.744 31 H 0.214 0.786 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 8.340 -3.981 -3.081 9.742 hybrid contribution 0.611 1.939 0.078 2.035 sum 8.951 -2.042 -3.004 9.660 Atomic orbital electron populations 1.69833 1.07473 1.29219 1.35014 1.25892 0.94748 1.01242 0.92340 0.86298 0.80885 0.81139 0.78642 1.18475 1.19789 1.19900 1.19392 0.97294 0.90844 1.41486 0.90316 1.17499 0.92342 0.90958 0.89106 1.20962 0.98331 0.97027 1.00188 1.20502 0.99057 0.93437 1.00426 1.20254 1.00269 0.96447 1.06394 1.21300 0.96600 0.97180 1.00813 1.17265 0.93393 0.95217 1.01232 1.52282 1.35085 1.42552 1.47501 1.01469 0.72216 0.73440 0.72460 1.93509 1.54272 1.84700 1.64838 1.93489 1.69135 1.47057 1.85387 1.31705 1.11593 1.20019 1.26629 1.23571 0.97641 0.95203 0.87743 1.77362 0.99476 1.12029 1.22885 1.46794 1.23350 1.38731 1.08228 0.71547 1.22474 0.95260 0.93965 0.85618 0.90812 0.86322 0.89345 0.88812 0.85017 0.74397 0.78597 0.79063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.21 10.98 55.55 0.61 -18.60 16 2 C 0.08 1.78 5.16 -17.33 -0.09 1.69 16 3 Si 0.91 17.56 29.59 -169.99 -5.03 12.53 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.05 8.38 -37.89 -0.32 -11.37 16 8 H 0.08 1.78 7.40 -52.49 -0.39 1.39 16 9 C 0.11 2.60 5.57 -106.63 -0.59 2.01 16 10 C -0.14 -3.53 8.62 -39.29 -0.34 -3.87 16 11 C -0.11 -2.55 9.96 -39.98 -0.40 -2.95 16 12 C -0.21 -4.54 10.03 -39.36 -0.40 -4.94 16 13 C -0.14 -2.96 9.26 -39.42 -0.36 -3.33 16 14 C 0.03 0.57 6.25 -83.29 -0.52 0.05 16 15 N -1.02 -19.64 5.34 32.72 0.17 -19.47 16 16 S 2.71 47.41 5.65 -107.50 -0.61 46.81 16 17 O -0.98 -17.98 17.85 -57.17 -1.02 -19.00 16 18 O -0.96 -18.59 14.84 -57.17 -0.85 -19.44 16 19 C -0.80 -12.77 5.99 -40.01 -0.24 -13.01 16 20 C 0.15 2.40 11.81 -17.36 -0.21 2.20 16 21 N -0.30 -4.63 12.70 30.63 0.39 -4.25 16 22 N -0.47 -5.73 7.36 30.45 0.22 -5.51 16 23 H 0.44 3.54 8.96 -182.61 -1.64 1.91 16 24 C 0.18 2.37 11.73 -17.22 -0.20 2.16 16 25 H 0.28 6.23 8.30 -40.82 -0.34 5.90 16 26 H 0.12 2.99 6.24 -52.49 -0.33 2.66 16 27 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 28 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.13 2.71 5.18 -52.49 -0.27 2.44 16 30 H 0.42 7.59 8.15 -34.47 -0.28 7.31 16 31 H 0.20 2.94 8.06 -52.48 -0.42 2.52 16 32 H 0.19 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 294.88 15.07 4.44 4.44 Total: -1.00 -30.92 294.88 -9.06 -39.99 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -3.73 Total: 13.86 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: -3.67 Total: -31.35 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 1.40 Total: -47.82 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.87 Total: -38.45 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Atomic # 16 Polarization: 47.41 SS G_CDS: -0.61 Total: 46.81 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.92 -9.06 -39.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193359995.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.147 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds