Wall clock time and date at job start Tue Mar 31 2020 06:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86796 * 120.00010 * 2 1 4 4 H 1.48495 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47131 * 299.99918 * 3 2 1 6 6 H 1.48500 * 109.47037 * 60.00029 * 3 2 1 7 7 C 1.39927 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00054 * 195.74727 * 7 2 1 9 9 C 1.41043 * 119.99844 * 15.73756 * 7 2 1 10 10 C 1.40730 * 120.31024 * 26.74598 * 9 7 2 11 11 C 1.36444 * 119.95580 * 179.97438 * 10 9 7 12 12 C 1.38896 * 120.59725 * 0.02562 * 11 10 9 13 13 C 1.38165 * 120.62611 * 359.97438 * 12 11 10 14 14 C 1.38746 * 120.02488 * 0.25599 * 13 12 11 15 15 N 1.38737 * 120.29259 * 179.72112 * 14 13 12 16 16 S 1.65594 * 120.00282 * 35.54063 * 15 14 13 17 17 O 1.42101 * 106.40493 * 173.49712 * 16 15 14 18 18 O 1.42101 * 106.40259 * 306.41885 * 16 15 14 19 19 C 1.76201 * 107.21724 * 59.95647 * 16 15 14 20 20 C 1.39873 * 126.04148 * 269.69413 * 19 16 15 21 21 N 1.30836 * 108.20271 * 179.81910 * 20 19 16 22 22 N 1.40078 * 108.20486 * 0.43903 * 21 20 19 23 23 H 0.97003 * 126.03786 * 179.69582 * 22 21 20 24 24 C 1.34951 * 107.92640 * 359.71850 * 22 21 20 25 25 H 0.96998 * 120.00074 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.02208 * 359.95204 * 10 9 7 27 27 H 1.08000 * 119.70018 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.69002 * 180.02562 * 12 11 10 29 29 H 1.07998 * 119.98760 * 179.97438 * 13 12 11 30 30 H 0.97005 * 119.99701 * 215.53706 * 15 14 13 31 31 H 1.08008 * 125.89270 * 359.97438 * 20 19 16 32 32 H 1.08006 * 126.12500 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3964 1.2125 7 6 2.0084 -1.2118 -0.0005 8 1 3.0580 -1.2294 0.2533 9 6 1.3429 -2.4102 -0.3324 10 6 0.2142 -2.3866 -1.1726 11 6 -0.4238 -3.5503 -1.4894 12 6 0.0298 -4.7641 -0.9892 13 6 1.1355 -4.8155 -0.1623 14 6 1.8011 -3.6474 0.1804 15 7 2.9085 -3.6920 1.0150 16 16 3.9618 -4.9666 0.9257 17 8 5.0508 -4.6479 1.7812 18 8 3.1797 -6.1443 1.0691 19 6 4.6083 -4.9951 -0.7131 20 6 4.0669 -5.6904 -1.7994 21 7 4.8206 -5.4658 -2.8451 22 7 5.8725 -4.6274 -2.4543 23 1 6.5853 -4.3018 -3.0261 24 6 5.7195 -4.3530 -1.1419 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1470 -1.4479 -1.5661 27 1 -1.2894 -3.5275 -2.1349 28 1 -0.4861 -5.6764 -1.2497 29 1 1.4791 -5.7649 0.2212 30 1 3.0657 -2.9764 1.6508 31 1 3.1786 -6.3044 -1.7790 32 1 6.3677 -3.7318 -0.5415 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193359995.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:43 Heat of formation + Delta-G solvation = -0.978975 kcal Electronic energy + Delta-G solvation = -21337.293612 eV Core-core repulsion = 18004.330060 eV Total energy + Delta-G solvation = -3332.963552 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.22157 -39.77844 -38.15239 -36.85138 -35.64830 -35.33123 -32.74782 -31.45518 -31.39357 -29.67917 -26.96729 -23.63053 -23.06158 -22.77833 -22.41477 -20.29846 -19.56914 -19.19371 -18.35688 -18.05278 -16.97261 -16.70702 -16.20844 -15.97448 -15.76618 -15.54001 -15.08688 -14.48922 -14.32692 -14.06872 -13.84426 -13.27509 -13.19279 -13.17153 -12.90958 -12.83872 -12.77190 -12.55743 -12.11413 -11.86299 -11.61034 -11.40942 -11.02778 -10.94202 -10.87203 -10.43686 -9.27634 -8.86224 -8.50828 -6.23945 -0.44740 0.59070 1.01995 1.15911 1.23714 1.42465 1.53937 1.55691 1.84337 2.22886 2.29308 2.80672 2.85457 3.34565 3.76192 3.80228 3.96104 4.35748 4.48527 4.59094 4.63172 4.75355 5.10970 5.23345 5.26809 5.36505 5.42559 5.72609 5.86855 6.15498 6.18024 6.26421 6.36623 6.39056 6.44413 6.77640 6.97653 7.10605 8.39090 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.006783 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.029199 B = 4127.218764 C = 4582.764090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.973 3.027 4 H -0.253 1.253 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.484 4.484 8 H 0.086 0.914 9 C 0.077 3.923 10 C -0.170 4.170 11 C -0.122 4.122 12 C -0.212 4.212 13 C -0.146 4.146 14 C 0.033 3.967 15 N -1.028 6.028 16 S 2.739 3.261 17 O -0.988 6.988 18 O -0.982 6.982 19 C -0.826 4.826 20 C 0.135 3.865 21 N -0.316 5.316 22 N -0.450 5.450 23 H 0.460 0.540 24 C 0.197 3.803 25 H 0.285 0.715 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.121 0.879 29 H 0.143 0.857 30 H 0.421 0.579 31 H 0.199 0.801 32 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.800 -3.072 -2.610 10.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.795 3.205 4 H -0.176 1.176 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.514 4.514 8 H 0.104 0.896 9 C 0.072 3.928 10 C -0.191 4.191 11 C -0.141 4.141 12 C -0.232 4.232 13 C -0.167 4.167 14 C -0.064 4.064 15 N -0.778 5.778 16 S 2.831 3.169 17 O -0.978 6.978 18 O -0.972 6.972 19 C -0.927 4.927 20 C -0.055 4.055 21 N -0.137 5.137 22 N -0.156 5.156 23 H 0.308 0.692 24 C 0.040 3.960 25 H 0.096 0.904 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.139 0.861 29 H 0.160 0.840 30 H 0.259 0.741 31 H 0.216 0.784 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 10.044 -3.896 -3.299 11.267 hybrid contribution 0.150 1.787 0.118 1.797 sum 10.194 -2.109 -3.182 10.885 Atomic orbital electron populations 1.69901 1.08889 1.30222 1.36188 1.26675 0.95385 1.04251 0.91617 0.85277 0.79842 0.76903 0.78461 1.17613 1.19724 1.19599 1.19636 0.97762 0.91439 1.42584 0.89581 1.17799 0.92973 0.92113 0.89916 1.20965 0.99529 0.97133 1.01446 1.20734 0.99542 0.93181 1.00655 1.20605 0.99996 0.97147 1.05430 1.21518 0.96763 0.97425 1.01038 1.17317 0.93880 0.94720 1.00498 1.52351 1.35260 1.42813 1.47394 1.00387 0.71558 0.72257 0.72681 1.93501 1.54043 1.84704 1.65580 1.93450 1.69862 1.47749 1.86128 1.31409 1.13383 1.22320 1.25560 1.23716 0.98132 0.95633 0.88037 1.77302 1.00373 1.12970 1.23070 1.46787 1.22916 1.37445 1.08404 0.69183 1.23062 0.94386 0.92679 0.85860 0.90405 0.88078 0.87419 0.86061 0.84012 0.74135 0.78434 0.75240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.03 10.98 21.83 0.24 -40.79 16 2 C 0.04 1.67 5.16 85.24 0.44 2.11 16 3 Si 0.97 35.78 29.59 68.60 2.03 37.81 16 4 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 7 C -0.48 -23.41 8.38 23.37 0.20 -23.22 16 8 H 0.09 3.86 7.40 -2.91 -0.02 3.84 16 9 C 0.08 3.83 5.57 -21.17 -0.12 3.71 16 10 C -0.17 -8.48 8.62 22.46 0.19 -8.29 16 11 C -0.12 -5.41 9.96 22.01 0.22 -5.19 16 12 C -0.21 -8.81 10.03 22.41 0.22 -8.58 16 13 C -0.15 -6.19 9.26 22.37 0.21 -5.99 16 14 C 0.03 1.45 6.25 38.99 0.24 1.70 16 15 N -1.03 -38.83 5.34 -50.39 -0.27 -39.10 16 16 S 2.74 92.13 5.65 -56.49 -0.32 91.81 16 17 O -0.99 -34.25 17.85 -128.00 -2.28 -36.54 16 18 O -0.98 -37.09 14.84 -128.00 -1.90 -38.99 16 19 C -0.83 -24.80 5.99 21.99 0.13 -24.67 16 20 C 0.13 4.20 11.81 85.24 1.01 5.20 16 21 N -0.32 -9.32 12.70 -57.02 -0.72 -10.04 16 22 N -0.45 -9.76 7.36 -57.59 -0.42 -10.18 16 23 H 0.46 5.91 8.96 -213.33 -1.91 4.00 16 24 C 0.20 4.52 11.73 83.54 0.98 5.50 16 25 H 0.29 12.94 8.30 -92.71 -0.77 12.17 16 26 H 0.10 5.30 6.24 -2.91 -0.02 5.28 16 27 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 28 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 29 H 0.14 5.70 5.18 -2.91 -0.02 5.69 16 30 H 0.42 15.11 8.15 -96.74 -0.79 14.32 16 31 H 0.20 5.83 8.06 -2.91 -0.02 5.81 16 32 H 0.23 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -65.76 294.88 -1.42 -67.18 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -1.50 Total: 36.54 kcal Atomic # 6 Polarization: -61.43 SS G_CDS: 3.73 Total: -57.71 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -1.18 Total: -100.11 kcal Atomic # 8 Polarization: -71.34 SS G_CDS: -4.18 Total: -75.52 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.81 kcal Atomic # 16 Polarization: 92.13 SS G_CDS: -0.32 Total: 91.81 kcal Total: -65.76 -1.42 -67.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193359995.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.201 kcal (2) G-P(sol) polarization free energy of solvation -65.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds