Wall clock time and date at job start Tue Mar 31 2020 06:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35710 * 116.99864 * 2 1 4 4 C 1.38444 * 120.11897 * 359.71868 * 3 2 1 5 5 C 1.38685 * 120.03361 * 179.77682 * 4 3 2 6 6 O 1.35804 * 119.85776 * 180.23513 * 5 4 3 7 7 C 1.34294 * 117.00340 * 69.28482 * 6 5 4 8 8 O 1.20822 * 119.99671 * 5.77474 * 7 6 5 9 9 C 1.50706 * 120.00229 * 185.77436 * 7 6 5 10 10 S 1.80994 * 109.46845 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99775 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99778 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00096 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00005 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00114 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47086 * 59.99675 * 15 13 11 17 17 H 1.48498 * 109.47160 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47248 * 300.00198 * 15 13 11 19 19 C 1.39096 * 120.27929 * 0.50740 * 5 4 3 20 20 C 1.37630 * 120.24031 * 359.74789 * 19 5 4 21 21 C 1.39820 * 119.95815 * 359.97438 * 20 19 5 22 22 C 1.43197 * 120.14128 * 179.97438 * 21 20 19 23 23 N 3.53180 * 165.87417 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46756 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46962 * 60.00317 * 1 2 3 26 26 H 1.09005 * 109.46688 * 300.00418 * 1 2 3 27 27 H 1.08000 * 119.97911 * 0.02610 * 4 3 2 28 28 H 1.09000 * 109.46768 * 299.99742 * 9 7 6 29 29 H 1.09001 * 109.46854 * 60.00067 * 9 7 6 30 30 H 0.96994 * 120.00176 * 180.02562 * 14 13 11 31 31 H 1.08003 * 119.88058 * 179.72984 * 19 5 4 32 32 H 1.07996 * 120.02659 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2935 2.3718 -0.0059 5 6 1.9249 3.6066 -0.0012 6 8 1.1841 4.7448 -0.0022 7 6 0.4923 5.0230 1.1148 8 8 0.6276 4.3324 2.0969 9 6 -0.4528 6.1965 1.1432 10 16 -1.2277 6.3077 2.7750 11 6 -2.2508 7.7216 2.5322 12 1 -2.2538 8.2286 1.5786 13 6 -3.0537 8.1830 3.5661 14 7 -3.0505 7.5647 4.7282 15 14 -4.1378 9.6823 3.3089 16 1 -5.0932 9.4186 2.2030 17 1 -4.8916 9.9680 4.5560 18 1 -3.2909 10.8521 2.9629 19 6 3.3137 3.6842 -0.0012 20 6 4.0721 2.5356 -0.0007 21 6 3.4459 1.2855 0.0005 22 6 4.2312 0.0880 0.0005 23 7 4.8541 -0.8619 0.0004 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 0.2149 2.3171 -0.0101 28 1 0.1006 7.1136 0.9409 29 1 -1.2226 6.0615 0.3834 30 1 -3.6118 7.8870 5.4505 31 1 3.7987 4.6492 -0.0020 32 1 5.1501 2.5999 -0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195164634.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:51 Heat of formation + Delta-G solvation = -53.800224 kcal Electronic energy + Delta-G solvation = -19565.547229 eV Core-core repulsion = 16198.000424 eV Total energy + Delta-G solvation = -3367.546805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48206 -40.16981 -37.91776 -36.95661 -36.05148 -32.57650 -31.41582 -30.73410 -29.71866 -27.68269 -25.68295 -24.48114 -22.77025 -21.51391 -19.57083 -18.55912 -18.07664 -17.48247 -16.79693 -16.28791 -16.04807 -15.63574 -14.92873 -14.90361 -14.54140 -14.32508 -14.03532 -13.93700 -13.36755 -13.25574 -12.86655 -12.64463 -12.58095 -12.42155 -12.06081 -11.77805 -11.48775 -11.20581 -11.12957 -11.06551 -10.91213 -10.36948 -10.02525 -9.24310 -9.19402 -8.63153 -8.49902 -6.72798 -6.36267 -4.10752 0.29321 0.96252 2.21931 2.34338 2.52412 2.76279 2.81547 3.16017 3.17127 3.21638 3.34426 3.57259 3.67545 4.05765 4.40900 4.49132 4.69962 4.81047 4.88970 4.93404 4.99949 5.04313 5.22729 5.26451 5.44275 5.57358 5.61231 5.80167 5.89129 5.91379 6.10101 6.49302 6.82536 7.35675 7.46348 7.90525 8.20921 9.09280 10.71095 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.033810 B = 0.003024 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.953763 B = 9258.085894 C = 9615.903242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.307 6.307 3 C 0.195 3.805 4 C -0.220 4.220 5 C 0.169 3.831 6 O -0.299 6.299 7 C 0.479 3.521 8 O -0.462 6.462 9 C -0.128 4.128 10 S -0.054 6.054 11 C -0.539 4.539 12 H 0.077 0.923 13 C 0.076 3.924 14 N -0.867 5.867 15 Si 0.922 3.078 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.158 4.158 20 C -0.016 4.016 21 C -0.073 4.073 22 C 0.269 3.731 23 N -0.422 5.422 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.146 0.854 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.271 0.729 31 H 0.147 0.853 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.405 -8.241 -11.797 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.219 6.219 3 C 0.145 3.855 4 C -0.239 4.239 5 C 0.126 3.874 6 O -0.216 6.216 7 C 0.320 3.680 8 O -0.344 6.344 9 C -0.275 4.275 10 S 0.172 5.828 11 C -0.687 4.687 12 H 0.095 0.905 13 C -0.134 4.134 14 N -0.501 5.501 15 Si 0.748 3.252 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.198 1.198 19 C -0.177 4.177 20 C -0.036 4.036 21 C -0.077 4.077 22 C -0.046 4.046 23 N -0.098 5.098 24 H 0.124 0.876 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.164 0.836 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.165 0.835 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.545 -10.804 -10.349 17.747 hybrid contribution -1.458 2.201 -1.197 2.899 sum 8.086 -8.603 -11.546 16.514 Atomic orbital electron populations 1.23270 0.76886 1.04773 1.02463 1.86083 1.22640 1.25853 1.87344 1.18598 0.90155 0.84527 0.92170 1.21337 1.01440 0.91053 1.10068 1.18532 0.89976 0.84419 0.94497 1.84645 1.56726 1.39114 1.41129 1.23838 0.78465 0.85963 0.79690 1.90733 1.60799 1.49021 1.33841 1.23366 0.99098 0.95688 1.09382 1.85481 1.52015 1.40342 1.04949 1.22788 1.28977 1.14867 1.02055 0.90481 1.25007 0.96429 0.97671 0.94318 1.69988 1.38052 1.39401 1.02698 0.86162 0.79798 0.81364 0.77853 1.19801 1.20741 1.19763 1.20961 0.91492 0.99867 1.05367 1.20840 1.00407 0.88784 0.93570 1.15324 0.88024 0.88734 1.15614 1.25218 0.93222 0.92651 0.93486 1.81211 1.09190 1.09865 1.09544 0.87566 0.91893 0.91454 0.83622 0.87350 0.87432 0.91893 0.83532 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.41 9.93 -18.83 -0.19 -3.60 16 3 C 0.19 2.22 6.69 -38.74 -0.26 1.96 16 4 C -0.22 -2.59 8.30 -39.34 -0.33 -2.91 16 5 C 0.17 2.10 5.27 -39.10 -0.21 1.90 16 6 O -0.30 -4.18 10.03 -23.32 -0.23 -4.41 16 7 C 0.48 8.11 7.75 36.01 0.28 8.39 16 8 O -0.46 -9.14 15.28 -18.74 -0.29 -9.43 16 9 C -0.13 -2.31 6.27 36.01 0.23 -2.09 16 10 S -0.05 -1.34 20.58 -107.50 -2.21 -3.56 16 11 C -0.54 -14.29 9.50 30.94 0.29 -14.00 16 12 H 0.08 1.92 7.80 -52.48 -0.41 1.51 16 13 C 0.08 2.04 5.49 -17.43 -0.10 1.94 16 14 N -0.87 -24.77 13.22 55.49 0.73 -24.04 16 15 Si 0.92 20.27 29.55 -169.99 -5.02 15.24 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 C -0.16 -1.56 9.96 -39.49 -0.39 -1.96 16 20 C -0.02 -0.14 9.75 -39.21 -0.38 -0.52 16 21 C -0.07 -0.78 5.76 -106.61 -0.61 -1.39 16 22 C 0.27 3.27 14.87 -22.48 -0.33 2.94 16 23 N -0.42 -5.92 18.54 41.84 0.78 -5.14 16 24 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 26 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 27 H 0.15 1.60 6.29 -52.49 -0.33 1.27 16 28 H 0.11 1.79 8.14 -51.92 -0.42 1.37 16 29 H 0.11 1.76 8.14 -51.92 -0.42 1.34 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 316.12 15.07 4.76 4.76 Total: -1.00 -32.20 316.12 -5.27 -37.47 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -2.78 Total: -2.71 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -0.82 Total: -4.59 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 1.51 Total: -29.18 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.71 Total: -17.44 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.21 Total: -3.56 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.20 -5.27 -37.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195164634.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.327 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds