Wall clock time and date at job start Tue Mar 31 2020 06:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35710 * 116.99864 * 2 1 4 4 C 1.38444 * 120.11897 * 359.71868 * 3 2 1 5 5 C 1.38685 * 120.03361 * 179.77682 * 4 3 2 6 6 O 1.35804 * 119.85776 * 180.23513 * 5 4 3 7 7 C 1.34294 * 117.00340 * 69.28482 * 6 5 4 8 8 O 1.20822 * 119.99671 * 5.77474 * 7 6 5 9 9 C 1.50706 * 120.00229 * 185.77436 * 7 6 5 10 10 S 1.80994 * 109.46845 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99775 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99778 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00096 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00005 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00114 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47086 * 59.99675 * 15 13 11 17 17 H 1.48498 * 109.47160 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47248 * 300.00198 * 15 13 11 19 19 C 1.39096 * 120.27929 * 0.50740 * 5 4 3 20 20 C 1.37630 * 120.24031 * 359.74789 * 19 5 4 21 21 C 1.39820 * 119.95815 * 359.97438 * 20 19 5 22 22 C 1.43197 * 120.14128 * 179.97438 * 21 20 19 23 23 N 3.53180 * 165.87417 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46756 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46962 * 60.00317 * 1 2 3 26 26 H 1.09005 * 109.46688 * 300.00418 * 1 2 3 27 27 H 1.08000 * 119.97911 * 0.02610 * 4 3 2 28 28 H 1.09000 * 109.46768 * 299.99742 * 9 7 6 29 29 H 1.09001 * 109.46854 * 60.00067 * 9 7 6 30 30 H 0.96994 * 120.00176 * 180.02562 * 14 13 11 31 31 H 1.08003 * 119.88058 * 179.72984 * 19 5 4 32 32 H 1.07996 * 120.02659 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2935 2.3718 -0.0059 5 6 1.9249 3.6066 -0.0012 6 8 1.1841 4.7448 -0.0022 7 6 0.4923 5.0230 1.1148 8 8 0.6276 4.3324 2.0969 9 6 -0.4528 6.1965 1.1432 10 16 -1.2277 6.3077 2.7750 11 6 -2.2508 7.7216 2.5322 12 1 -2.2538 8.2286 1.5786 13 6 -3.0537 8.1830 3.5661 14 7 -3.0505 7.5647 4.7282 15 14 -4.1378 9.6823 3.3089 16 1 -5.0932 9.4186 2.2030 17 1 -4.8916 9.9680 4.5560 18 1 -3.2909 10.8521 2.9629 19 6 3.3137 3.6842 -0.0012 20 6 4.0721 2.5356 -0.0007 21 6 3.4459 1.2855 0.0005 22 6 4.2312 0.0880 0.0005 23 7 4.8541 -0.8619 0.0004 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 0.2149 2.3171 -0.0101 28 1 0.1006 7.1136 0.9409 29 1 -1.2226 6.0615 0.3834 30 1 -3.6118 7.8870 5.4505 31 1 3.7987 4.6492 -0.0020 32 1 5.1501 2.5999 -0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195164634.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:50 Heat of formation + Delta-G solvation = -72.539496 kcal Electronic energy + Delta-G solvation = -19566.359824 eV Core-core repulsion = 16198.000424 eV Total energy + Delta-G solvation = -3368.359400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.57652 -41.11551 -38.89990 -38.07744 -37.08125 -34.58976 -32.44927 -31.55498 -31.02481 -28.39514 -27.69696 -25.51982 -23.57879 -22.67835 -20.43317 -19.99731 -19.56844 -18.53567 -17.98119 -17.30788 -16.92209 -16.86854 -16.77092 -16.18196 -15.73817 -15.21555 -15.04929 -14.95434 -14.64210 -14.47968 -14.33119 -13.79958 -13.54812 -13.31447 -13.16977 -13.04979 -12.85489 -12.69685 -12.54101 -12.34538 -12.01700 -11.80028 -11.73503 -11.12476 -10.37163 -10.11811 -9.47686 -8.71578 -8.35744 -6.15044 -0.63089 0.16153 0.94185 0.99254 1.41984 1.46694 1.54689 1.56339 1.66808 1.98479 2.04746 2.25393 2.67588 2.75578 2.99963 3.24698 3.55014 3.62489 3.86841 3.97780 4.18601 4.24830 4.27367 4.29855 4.45620 4.51489 4.66494 4.73342 4.96700 5.05088 5.20994 5.43791 5.48233 6.00688 6.20017 6.40866 6.64770 7.06775 8.72889 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.033810 B = 0.003024 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.953763 B = 9258.085894 C = 9615.903242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.188 3.812 4 C -0.226 4.226 5 C 0.139 3.861 6 O -0.285 6.285 7 C 0.490 3.510 8 O -0.496 6.496 9 C -0.107 4.107 10 S -0.133 6.133 11 C -0.547 4.547 12 H 0.089 0.911 13 C 0.017 3.983 14 N -0.910 5.910 15 Si 0.996 3.004 16 H -0.262 1.262 17 H -0.282 1.282 18 H -0.262 1.262 19 C -0.152 4.152 20 C 0.003 3.997 21 C -0.078 4.078 22 C 0.288 3.712 23 N -0.457 5.457 24 H 0.127 0.873 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.147 0.853 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.272 0.728 31 H 0.171 0.829 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.980 -7.212 -13.496 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.235 6.235 3 C 0.139 3.861 4 C -0.245 4.245 5 C 0.096 3.904 6 O -0.201 6.201 7 C 0.333 3.667 8 O -0.380 6.380 9 C -0.255 4.255 10 S 0.094 5.906 11 C -0.695 4.695 12 H 0.107 0.893 13 C -0.188 4.188 14 N -0.546 5.546 15 Si 0.818 3.182 16 H -0.186 1.186 17 H -0.207 1.207 18 H -0.186 1.186 19 C -0.170 4.170 20 C -0.017 4.017 21 C -0.082 4.082 22 C -0.027 4.027 23 N -0.134 5.134 24 H 0.145 0.855 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.164 0.836 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.081 0.919 31 H 0.188 0.812 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 10.130 -9.780 -12.083 18.554 hybrid contribution -1.544 1.773 -0.768 2.473 sum 8.586 -8.007 -12.851 17.407 Atomic orbital electron populations 1.23492 0.75455 1.06281 1.02737 1.86071 1.24214 1.25890 1.87315 1.18700 0.90502 0.84548 0.92359 1.21364 1.01685 0.91157 1.10301 1.18904 0.91001 0.83863 0.96611 1.84610 1.56404 1.39790 1.39282 1.23460 0.78189 0.85096 0.79949 1.90729 1.62001 1.50031 1.35280 1.23138 0.99850 0.97414 1.05138 1.85585 1.53232 1.40703 1.11110 1.23171 1.28835 1.14925 1.02560 0.89313 1.26074 0.97936 1.00882 0.93920 1.70147 1.39309 1.41396 1.03781 0.85025 0.77861 0.77377 0.77913 1.18631 1.20690 1.18624 1.21251 0.90369 1.01363 1.04008 1.21216 1.02042 0.87288 0.91194 1.15538 0.87743 0.89031 1.15926 1.25349 0.92465 0.92411 0.92427 1.81230 1.10462 1.10805 1.10909 0.85530 0.90597 0.92183 0.83569 0.85237 0.85274 0.91907 0.81166 0.79697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.33 16 2 O -0.32 -6.98 9.93 -90.31 -0.90 -7.87 16 3 C 0.19 4.11 6.69 22.82 0.15 4.26 16 4 C -0.23 -5.12 8.30 22.43 0.19 -4.94 16 5 C 0.14 3.22 5.27 22.58 0.12 3.34 16 6 O -0.29 -7.44 10.03 5.59 0.06 -7.38 16 7 C 0.49 16.09 7.75 71.24 0.55 16.65 16 8 O -0.50 -19.62 15.28 21.97 0.34 -19.28 16 9 C -0.11 -3.74 6.27 71.24 0.45 -3.30 16 10 S -0.13 -6.69 20.58 -56.49 -1.16 -7.85 16 11 C -0.55 -28.88 9.50 67.95 0.65 -28.23 16 12 H 0.09 4.30 7.80 -2.91 -0.02 4.27 16 13 C 0.02 0.92 5.49 84.86 0.47 1.38 16 14 N -0.91 -52.92 13.22 21.65 0.29 -52.63 16 15 Si 1.00 41.06 29.55 68.60 2.03 43.09 16 16 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 17 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 18 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 19 C -0.15 -2.57 9.96 22.33 0.22 -2.34 16 20 C 0.00 0.04 9.75 22.51 0.22 0.26 16 21 C -0.08 -1.54 5.76 -21.15 -0.12 -1.66 16 22 C 0.29 6.63 14.87 88.33 1.31 7.94 16 23 N -0.46 -12.47 18.54 19.00 0.35 -12.12 16 24 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.08 0.93 7.65 -2.39 -0.02 0.91 16 26 H 0.06 0.99 7.67 -2.38 -0.02 0.97 16 27 H 0.15 3.18 6.29 -2.91 -0.02 3.16 16 28 H 0.13 4.00 8.14 -2.40 -0.02 3.98 16 29 H 0.13 3.97 8.14 -2.39 -0.02 3.95 16 30 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -70.73 316.12 7.48 -63.25 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.17 Total: 6.12 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 5.31 Total: -5.31 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: 0.64 Total: -64.75 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.50 Total: -34.54 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: -6.69 SS G_CDS: -1.16 Total: -7.85 kcal Total: -70.73 7.48 -63.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195164634.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.293 kcal (2) G-P(sol) polarization free energy of solvation -70.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds