Wall clock time and date at job start Tue Mar 31 2020 07:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39812 * 120.07068 * 243.25954 * 3 2 1 5 5 C 1.37654 * 119.94612 * 179.97438 * 4 3 2 6 6 C 1.39153 * 120.08775 * 0.02805 * 5 4 3 7 7 N 1.39260 * 119.92767 * 180.27416 * 6 5 4 8 8 C 1.46498 * 119.99926 * 359.71904 * 7 6 5 9 9 C 1.50702 * 109.47142 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99837 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00173 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00213 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47097 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00022 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99654 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00291 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99830 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47078 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46910 * 120.00474 * 17 15 13 20 20 H 1.48500 * 109.47375 * 239.99992 * 17 15 13 21 21 C 1.39255 * 120.14354 * 359.97438 * 6 5 4 22 22 Cl 1.73600 * 119.96969 * 180.02562 * 21 6 5 23 23 C 1.37753 * 120.05559 * 359.97438 * 21 6 5 24 24 H 1.08003 * 120.02664 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.96177 * 180.02562 * 5 4 3 26 26 H 0.96995 * 119.99915 * 179.72012 * 7 6 5 27 27 H 1.08995 * 109.47466 * 300.00507 * 8 7 6 28 28 H 1.09007 * 109.47147 * 60.00327 * 8 7 6 29 29 H 0.97004 * 119.99672 * 0.02562 * 11 9 8 30 30 H 1.09004 * 109.47032 * 300.00381 * 12 11 9 31 31 H 1.08999 * 109.47108 * 59.99912 * 12 11 9 32 32 H 0.96999 * 119.99822 * 180.02562 * 16 15 13 33 33 H 1.08001 * 120.04716 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 0.5454 1.0805 5 6 4.6449 0.5442 1.0781 6 6 5.3401 0.0021 0.0015 7 7 6.7327 -0.0026 0.0051 8 6 7.4641 0.5684 1.1387 9 6 8.9460 0.4385 0.8972 10 8 9.3511 -0.0796 -0.1217 11 7 9.8210 0.8989 1.8131 12 6 11.2615 0.7731 1.5781 13 6 12.0139 1.3603 2.7443 14 1 11.4731 1.7844 3.5774 15 6 13.3926 1.3552 2.7481 16 7 14.0511 0.8383 1.7338 17 14 14.3253 2.0837 4.1933 18 1 13.3595 2.5975 5.1974 19 1 15.1736 1.0349 4.8144 20 1 15.1846 3.1974 3.7173 21 6 4.6463 -0.5414 -1.0767 22 17 5.5182 -1.2171 -2.4172 23 6 3.2688 -0.5442 -1.0800 24 1 2.7297 0.9668 1.9165 25 1 5.1861 0.9645 1.9128 26 1 7.2183 -0.3838 -0.7430 27 1 7.2040 1.6215 1.2458 28 1 7.1967 0.0337 2.0502 29 1 9.4968 1.3136 2.6279 30 1 11.5216 -0.2801 1.4714 31 1 11.5290 1.3074 0.6664 32 1 15.0211 0.8344 1.7367 33 1 2.7309 -0.9654 -1.9164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225235487.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:44 Heat of formation + Delta-G solvation = -16.316928 kcal Electronic energy + Delta-G solvation = -19159.936416 eV Core-core repulsion = 15824.264054 eV Total energy + Delta-G solvation = -3335.672362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05820 -40.29523 -37.88328 -37.31253 -36.41124 -35.95431 -34.37732 -31.90526 -31.49427 -29.67106 -27.69005 -24.76287 -24.02604 -23.35611 -21.45218 -19.97153 -19.39331 -18.36777 -17.66252 -16.98892 -16.80754 -16.73895 -16.08224 -15.86041 -15.36762 -15.08244 -14.87184 -14.75617 -14.54045 -14.26151 -14.08686 -13.93506 -13.71835 -13.49074 -13.28453 -12.88336 -12.75199 -12.38261 -12.25199 -12.20112 -11.91318 -11.44321 -11.19978 -10.91650 -10.81100 -9.88887 -9.86802 -8.54189 -8.28158 -6.44079 -0.06129 0.25286 1.15951 1.46183 1.46216 1.59637 1.66474 1.76515 1.96442 1.99313 2.38208 2.68339 2.89175 3.02079 3.07849 3.73068 3.81071 4.08334 4.19490 4.35900 4.43410 4.44872 4.78035 4.91992 5.09465 5.12322 5.25433 5.32965 5.47384 5.56580 5.67424 5.85471 6.04167 6.43345 6.57083 6.67579 6.85176 7.24757 7.43891 8.83977 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.030270 B = 0.002668 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.798213 B =10494.051527 C =11398.391549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.291 3.709 3 C -0.098 4.098 4 C 0.004 3.996 5 C -0.188 4.188 6 C 0.257 3.743 7 N -0.726 5.726 8 C 0.109 3.891 9 C 0.488 3.512 10 O -0.599 6.599 11 N -0.698 5.698 12 C 0.265 3.735 13 C -0.552 4.552 14 H 0.089 0.911 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.982 3.018 18 H -0.250 1.250 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.138 4.138 22 Cl -0.075 7.075 23 C -0.004 4.004 24 H 0.166 0.834 25 H 0.172 0.828 26 H 0.407 0.593 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.414 0.586 30 H -0.011 1.011 31 H -0.011 1.011 32 H 0.267 0.733 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.355 0.818 1.420 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.023 4.023 3 C -0.105 4.105 4 C -0.017 4.017 5 C -0.211 4.211 6 C 0.147 3.853 7 N -0.354 5.354 8 C -0.017 4.017 9 C 0.275 3.725 10 O -0.481 6.481 11 N -0.348 5.348 12 C 0.142 3.858 13 C -0.590 4.590 14 H 0.107 0.893 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.806 3.194 18 H -0.173 1.173 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.169 4.169 22 Cl -0.047 7.047 23 C -0.026 4.026 24 H 0.184 0.816 25 H 0.189 0.811 26 H 0.246 0.754 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.251 0.749 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.076 0.924 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.402 0.454 0.706 21.418 hybrid contribution 1.678 -0.101 -0.194 1.692 sum -19.724 0.353 0.512 19.734 Atomic orbital electron populations 1.81292 1.13423 1.11480 1.09397 1.25685 0.92455 0.91886 0.92278 1.15590 0.83369 1.12338 0.99162 1.21261 0.93180 0.91499 0.95743 1.20868 0.93963 1.07203 0.99047 1.17987 0.83204 0.91297 0.92797 1.44803 1.02869 1.64266 1.23462 1.21378 0.85775 1.03194 0.91397 1.21321 0.90199 0.77868 0.83130 1.90671 1.81070 1.46793 1.29613 1.46062 1.07090 1.59293 1.22397 1.18564 0.76563 0.94689 0.95985 1.21664 0.92063 1.40265 1.04978 0.89348 1.26049 0.98888 0.95399 0.99408 1.70140 1.08491 1.45674 1.32769 0.85142 0.78327 0.77665 0.78281 1.17282 1.20806 1.20800 1.20200 0.92434 1.11815 0.92454 1.98383 1.76506 1.84318 1.45454 1.20790 0.90742 0.93826 0.97239 0.81624 0.81094 0.75436 0.85042 0.85044 0.74899 0.99342 0.99333 0.92369 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.97 18.54 19.00 0.35 -10.62 16 2 C 0.29 5.04 15.33 88.33 1.35 6.40 16 3 C -0.10 -1.29 5.74 -21.28 -0.12 -1.41 16 4 C 0.00 0.04 9.74 22.51 0.22 0.26 16 5 C -0.19 -1.90 9.28 22.35 0.21 -1.70 16 6 C 0.26 4.26 6.65 38.43 0.26 4.52 16 7 N -0.73 -15.26 5.64 -342.99 -1.94 -17.19 16 8 C 0.11 1.98 5.38 85.63 0.46 2.44 16 9 C 0.49 16.03 7.90 87.66 0.69 16.72 16 10 O -0.60 -26.16 15.67 -3.02 -0.05 -26.21 16 11 N -0.70 -24.90 5.55 -466.79 -2.59 -27.49 16 12 C 0.26 13.39 5.43 85.63 0.46 13.85 16 13 C -0.55 -27.88 9.28 25.60 0.24 -27.65 16 14 H 0.09 3.95 7.60 -2.91 -0.02 3.92 16 15 C 0.00 0.11 5.46 84.65 0.46 0.57 16 16 N -0.93 -54.27 13.29 21.45 0.28 -53.99 16 17 Si 0.98 40.27 29.54 68.60 2.03 42.30 16 18 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 19 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 21 C -0.14 -2.44 6.33 22.40 0.14 -2.30 16 22 Cl -0.08 -1.59 27.57 -2.72 -0.07 -1.67 16 23 C 0.00 -0.06 9.52 22.53 0.21 0.15 16 24 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 25 H 0.17 0.77 6.70 -2.91 -0.02 0.75 16 26 H 0.41 10.94 6.08 -92.71 -0.56 10.37 16 27 H 0.13 1.52 7.94 -2.39 -0.02 1.50 16 28 H 0.13 1.51 7.93 -2.38 -0.02 1.50 16 29 H 0.41 11.20 8.32 -92.71 -0.77 10.42 16 30 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -72.32 318.42 2.45 -69.86 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -0.15 Total: 13.14 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 4.59 Total: 11.87 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -3.89 Total: -109.29 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.05 Total: -26.21 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.07 Total: -1.67 kcal Total: -72.32 2.45 -69.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225235487.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.547 kcal (2) G-P(sol) polarization free energy of solvation -72.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds