Wall clock time and date at job start Tue Mar 31 2020 06:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86793 * 120.00065 * 2 1 4 4 H 1.48504 * 109.47220 * 240.00295 * 3 2 1 5 5 H 1.48503 * 109.47365 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47118 * 120.00307 * 3 2 1 7 7 C 1.39955 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00047 * 192.93272 * 7 2 1 9 9 N 1.35203 * 120.00061 * 12.92767 * 7 2 1 10 10 C 1.34770 * 119.99801 * 198.60752 * 9 7 2 11 11 O 1.21568 * 120.00276 * 4.84369 * 10 9 7 12 12 C 1.48409 * 119.99857 * 184.84214 * 10 9 7 13 13 O 1.21536 * 120.00500 * 87.00264 * 12 10 9 14 14 C 1.47405 * 119.99948 * 267.00282 * 12 10 9 15 15 C 1.39915 * 120.15456 * 174.73811 * 14 12 10 16 16 C 1.37794 * 119.83989 * 180.27702 * 15 14 12 17 17 C 1.38605 * 120.15564 * 359.49177 * 16 15 14 18 18 Cl 1.73604 * 119.84425 * 180.25717 * 17 16 15 19 19 C 1.38598 * 120.31527 * 0.51313 * 17 16 15 20 20 C 1.37791 * 120.15751 * 359.74440 * 19 17 16 21 21 C 1.46500 * 119.99924 * 18.61588 * 9 7 2 22 22 C 1.52993 * 117.50164 * 126.92613 * 21 9 7 23 23 C 1.52995 * 117.50284 * 58.26065 * 21 9 7 24 24 H 0.97002 * 120.00291 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.08271 * 0.02562 * 15 14 12 26 26 H 1.08006 * 119.92546 * 179.72957 * 16 15 14 27 27 H 1.08002 * 119.92251 * 179.72286 * 19 17 16 28 28 H 1.07997 * 120.08576 * 179.97438 * 20 19 17 29 29 H 1.09002 * 115.54740 * 272.59284 * 21 9 7 30 30 H 1.08998 * 117.50008 * 359.97438 * 22 21 9 31 31 H 1.08996 * 117.50293 * 145.02096 * 22 21 9 32 32 H 1.08998 * 117.50410 * 214.98464 * 23 21 9 33 33 H 1.09004 * 117.50208 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0956 1.6964 -1.2126 5 1 1.2769 2.7465 0.0006 6 1 3.0957 1.6963 1.2124 7 6 2.0077 -1.2121 -0.0005 8 1 3.0671 -1.2241 0.2088 9 7 1.3573 -2.3680 -0.2630 10 6 1.9069 -3.5460 0.0926 11 8 2.9438 -3.5663 0.7270 12 6 1.2462 -4.8187 -0.2901 13 8 1.4838 -5.3265 -1.3684 14 6 0.3018 -5.4668 0.6377 15 6 -0.4059 -6.6058 0.2382 16 6 -1.2914 -7.2032 1.1087 17 6 -1.4740 -6.6845 2.3810 18 17 -2.5867 -7.4475 3.4735 19 6 -0.7765 -5.5565 2.7834 20 6 0.1083 -4.9457 1.9217 21 6 0.0554 -2.3399 -0.9342 22 6 -0.1117 -3.2001 -2.1882 23 6 -0.0153 -1.6774 -2.3114 24 1 -0.4851 0.8400 0.0004 25 1 -0.2615 -7.0135 -0.7513 26 1 -1.8416 -8.0799 0.8003 27 1 -0.9270 -5.1551 3.7747 28 1 0.6509 -4.0665 2.2363 29 1 -0.8090 -2.2322 -0.2789 30 1 0.7472 -3.7867 -2.5143 31 1 -1.0860 -3.6581 -2.3584 32 1 -0.9263 -1.1342 -2.5625 33 1 0.9068 -1.2620 -2.7181 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263918734.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:43 Heat of formation + Delta-G solvation = -4.639261 kcal Electronic energy + Delta-G solvation = -21093.228733 eV Core-core repulsion = 17725.770002 eV Total energy + Delta-G solvation = -3367.458732 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.20650 -38.74366 -37.53309 -36.47567 -36.15716 -33.26524 -31.47518 -31.19089 -30.96848 -26.45355 -24.37034 -22.87689 -22.29006 -21.49755 -21.26645 -18.85124 -17.43525 -17.15570 -16.54639 -15.89802 -15.32730 -15.03449 -14.67487 -14.43986 -14.28202 -13.78249 -13.59985 -13.42162 -13.19984 -12.72781 -12.30378 -12.07246 -11.62749 -11.53125 -11.44900 -11.20580 -10.88938 -10.75493 -10.57104 -10.51795 -10.41722 -9.97911 -9.51188 -9.10554 -8.99787 -8.75568 -8.35067 -8.03529 -6.51289 -4.00125 0.57650 1.29080 1.97178 2.45162 3.05096 3.16122 3.19487 3.48970 3.70470 3.91569 4.21738 4.58716 4.74240 4.81252 4.83239 5.07733 5.23344 5.29262 5.43456 5.61088 5.71792 5.88581 5.93306 6.06912 6.14542 6.18901 6.32331 6.38413 6.64451 6.69023 6.89008 7.06526 7.36928 7.68964 7.79817 8.27210 8.93368 9.16477 9.70150 10.50565 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.004762 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.123513 B = 5879.083549 C = 6246.766942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.047 3.953 3 Si 0.925 3.075 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.324 4.324 8 H 0.105 0.895 9 N -0.379 5.379 10 C 0.400 3.600 11 O -0.571 6.571 12 C 0.412 3.588 13 O -0.439 6.439 14 C -0.147 4.147 15 C -0.050 4.050 16 C -0.129 4.129 17 C -0.009 4.009 18 Cl -0.072 7.072 19 C -0.123 4.123 20 C -0.041 4.041 21 C 0.118 3.882 22 C -0.233 4.233 23 C -0.142 4.142 24 H 0.273 0.727 25 H 0.143 0.857 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.148 0.852 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.454 -8.743 1.930 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.161 4.161 3 Si 0.751 3.249 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.452 4.452 8 H 0.123 0.877 9 N -0.095 5.095 10 C 0.187 3.813 11 O -0.458 6.458 12 C 0.286 3.714 13 O -0.312 6.312 14 C -0.149 4.149 15 C -0.068 4.068 16 C -0.147 4.147 17 C -0.036 4.036 18 Cl -0.043 7.043 19 C -0.141 4.141 20 C -0.060 4.060 21 C 0.013 3.987 22 C -0.271 4.271 23 C -0.180 4.180 24 H 0.084 0.916 25 H 0.160 0.840 26 H 0.155 0.845 27 H 0.157 0.843 28 H 0.165 0.835 29 H 0.137 0.863 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.100 -8.913 1.753 11.530 hybrid contribution 0.068 0.909 0.107 0.918 sum -7.033 -8.004 1.860 10.816 Atomic orbital electron populations 1.69636 1.06378 1.28287 1.44539 1.25401 0.95295 0.99742 0.95620 0.86007 0.79209 0.80210 0.79459 1.19647 1.20734 1.19500 1.19515 0.94684 0.82546 1.48423 0.87705 1.42641 1.16048 1.04661 1.46174 1.19559 0.89323 0.84474 0.87926 1.90690 1.25019 1.85777 1.44308 1.22523 0.77290 0.86759 0.84810 1.90512 1.54678 1.63861 1.22151 1.20624 1.00413 0.97764 0.96067 1.21342 0.92843 0.92894 0.99762 1.20954 1.00290 1.01449 0.92034 1.21244 0.94780 0.95716 0.91829 1.98368 1.61311 1.81042 1.63615 1.21034 0.97061 0.94906 1.01137 1.21604 0.94340 0.98342 0.91680 1.21403 0.87954 1.01672 0.87707 1.23929 1.03039 0.95418 1.04686 1.22746 1.02351 0.92596 1.00322 0.91576 0.83952 0.84468 0.84258 0.83476 0.86317 0.88009 0.89299 0.89397 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.62 10.30 55.55 0.57 -20.05 16 2 C 0.05 1.16 4.93 -17.35 -0.09 1.08 16 3 Si 0.93 19.46 29.58 -169.99 -5.03 14.43 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.32 -8.53 9.15 -15.42 -0.14 -8.67 16 8 H 0.11 2.91 7.37 -52.49 -0.39 2.53 16 9 N -0.38 -9.37 2.89 -108.78 -0.31 -9.68 16 10 C 0.40 9.81 5.92 -12.07 -0.07 9.74 16 11 O -0.57 -15.76 16.77 5.31 0.09 -15.67 16 12 C 0.41 8.58 4.68 -31.66 -0.15 8.43 16 13 O -0.44 -9.32 14.71 5.33 0.08 -9.24 16 14 C -0.15 -2.52 5.88 -104.91 -0.62 -3.14 16 15 C -0.05 -0.70 9.60 -39.12 -0.38 -1.08 16 16 C -0.13 -1.55 9.81 -39.61 -0.39 -1.94 16 17 C -0.01 -0.11 6.33 -39.31 -0.25 -0.36 16 18 Cl -0.07 -0.79 28.95 -51.86 -1.50 -2.29 16 19 C -0.12 -1.65 9.81 -39.61 -0.39 -2.04 16 20 C -0.04 -0.67 9.46 -39.12 -0.37 -1.04 16 21 C 0.12 2.56 3.69 -67.94 -0.25 2.31 16 22 C -0.23 -4.44 8.66 -26.70 -0.23 -4.68 16 23 C -0.14 -2.88 8.93 -26.70 -0.24 -3.12 16 24 H 0.27 6.28 8.30 -40.82 -0.34 5.94 16 25 H 0.14 1.83 7.66 -52.49 -0.40 1.43 16 26 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 27 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 28 H 0.15 2.64 7.15 -52.49 -0.38 2.26 16 29 H 0.12 2.65 7.70 -51.93 -0.40 2.25 16 30 H 0.10 2.10 5.77 -51.93 -0.30 1.80 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 LS Contribution 305.85 15.07 4.61 4.61 Total: -1.00 -28.25 305.85 -8.16 -36.42 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.11 Total: 5.99 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.55 Total: -4.51 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: 0.26 Total: -29.73 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: 0.17 Total: -24.91 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.25 -8.16 -36.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263918734.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.776 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds