Wall clock time and date at job start Tue Mar 31 2020 06:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86793 * 120.00065 * 2 1 4 4 H 1.48504 * 109.47220 * 240.00295 * 3 2 1 5 5 H 1.48503 * 109.47365 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47118 * 120.00307 * 3 2 1 7 7 C 1.39955 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00047 * 192.93272 * 7 2 1 9 9 N 1.35203 * 120.00061 * 12.92767 * 7 2 1 10 10 C 1.34770 * 119.99801 * 198.60752 * 9 7 2 11 11 O 1.21568 * 120.00276 * 4.84369 * 10 9 7 12 12 C 1.48409 * 119.99857 * 184.84214 * 10 9 7 13 13 O 1.21536 * 120.00500 * 87.00264 * 12 10 9 14 14 C 1.47405 * 119.99948 * 267.00282 * 12 10 9 15 15 C 1.39915 * 120.15456 * 174.73811 * 14 12 10 16 16 C 1.37794 * 119.83989 * 180.27702 * 15 14 12 17 17 C 1.38605 * 120.15564 * 359.49177 * 16 15 14 18 18 Cl 1.73604 * 119.84425 * 180.25717 * 17 16 15 19 19 C 1.38598 * 120.31527 * 0.51313 * 17 16 15 20 20 C 1.37791 * 120.15751 * 359.74440 * 19 17 16 21 21 C 1.46500 * 119.99924 * 18.61588 * 9 7 2 22 22 C 1.52993 * 117.50164 * 126.92613 * 21 9 7 23 23 C 1.52995 * 117.50284 * 58.26065 * 21 9 7 24 24 H 0.97002 * 120.00291 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.08271 * 0.02562 * 15 14 12 26 26 H 1.08006 * 119.92546 * 179.72957 * 16 15 14 27 27 H 1.08002 * 119.92251 * 179.72286 * 19 17 16 28 28 H 1.07997 * 120.08576 * 179.97438 * 20 19 17 29 29 H 1.09002 * 115.54740 * 272.59284 * 21 9 7 30 30 H 1.08998 * 117.50008 * 359.97438 * 22 21 9 31 31 H 1.08996 * 117.50293 * 145.02096 * 22 21 9 32 32 H 1.08998 * 117.50410 * 214.98464 * 23 21 9 33 33 H 1.09004 * 117.50208 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0956 1.6964 -1.2126 5 1 1.2769 2.7465 0.0006 6 1 3.0957 1.6963 1.2124 7 6 2.0077 -1.2121 -0.0005 8 1 3.0671 -1.2241 0.2088 9 7 1.3573 -2.3680 -0.2630 10 6 1.9069 -3.5460 0.0926 11 8 2.9438 -3.5663 0.7270 12 6 1.2462 -4.8187 -0.2901 13 8 1.4838 -5.3265 -1.3684 14 6 0.3018 -5.4668 0.6377 15 6 -0.4059 -6.6058 0.2382 16 6 -1.2914 -7.2032 1.1087 17 6 -1.4740 -6.6845 2.3810 18 17 -2.5867 -7.4475 3.4735 19 6 -0.7765 -5.5565 2.7834 20 6 0.1083 -4.9457 1.9217 21 6 0.0554 -2.3399 -0.9342 22 6 -0.1117 -3.2001 -2.1882 23 6 -0.0153 -1.6774 -2.3114 24 1 -0.4851 0.8400 0.0004 25 1 -0.2615 -7.0135 -0.7513 26 1 -1.8416 -8.0799 0.8003 27 1 -0.9270 -5.1551 3.7747 28 1 0.6509 -4.0665 2.2363 29 1 -0.8090 -2.2322 -0.2789 30 1 0.7472 -3.7867 -2.5143 31 1 -1.0860 -3.6581 -2.3584 32 1 -0.9263 -1.1342 -2.5625 33 1 0.9068 -1.2620 -2.7181 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263918734.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:42 Heat of formation + Delta-G solvation = -19.589112 kcal Electronic energy + Delta-G solvation = -21093.877008 eV Core-core repulsion = 17725.770002 eV Total energy + Delta-G solvation = -3368.107006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.79441 -40.12446 -39.10787 -38.00950 -37.47750 -35.12165 -33.34501 -32.39418 -32.14585 -28.22109 -26.00101 -24.17168 -23.73447 -23.14828 -22.79899 -20.46045 -19.04363 -18.81290 -18.07673 -17.31734 -17.06302 -16.61349 -16.14756 -16.01513 -15.61007 -15.35621 -15.09539 -14.77366 -14.46560 -14.41416 -13.89233 -13.46498 -13.28565 -12.98186 -12.64933 -12.58358 -12.52020 -12.31681 -12.18193 -12.13202 -11.88426 -11.75898 -11.20747 -10.76265 -10.20783 -10.19045 -9.95493 -9.87597 -8.41571 -6.00712 -0.69735 0.20094 0.96839 1.00853 1.29247 1.42301 1.50488 1.69084 2.15348 2.48706 2.58107 2.88474 3.07063 3.28534 3.60645 3.78731 3.88045 4.07215 4.12772 4.21744 4.24656 4.43770 4.50729 4.75935 4.86990 4.98949 5.01472 5.04698 5.19757 5.28556 5.32414 5.38810 5.57019 5.83679 6.10179 6.34476 6.99114 7.23991 7.78883 8.58176 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.004762 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.123513 B = 5879.083549 C = 6246.766942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.026 3.974 3 Si 0.983 3.017 4 H -0.271 1.271 5 H -0.263 1.263 6 H -0.275 1.275 7 C -0.365 4.365 8 H 0.075 0.925 9 N -0.383 5.383 10 C 0.381 3.619 11 O -0.621 6.621 12 C 0.421 3.579 13 O -0.452 6.452 14 C -0.169 4.169 15 C -0.041 4.041 16 C -0.113 4.113 17 C -0.002 4.002 18 Cl -0.049 7.049 19 C -0.119 4.119 20 C -0.056 4.056 21 C 0.097 3.903 22 C -0.203 4.203 23 C -0.139 4.139 24 H 0.282 0.718 25 H 0.158 0.842 26 H 0.175 0.825 27 H 0.157 0.843 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.163 -9.684 1.782 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.196 1.196 5 H -0.187 1.187 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.093 0.907 9 N -0.098 5.098 10 C 0.170 3.830 11 O -0.511 6.511 12 C 0.296 3.704 13 O -0.326 6.326 14 C -0.171 4.171 15 C -0.059 4.059 16 C -0.131 4.131 17 C -0.029 4.029 18 Cl -0.020 7.020 19 C -0.138 4.138 20 C -0.074 4.074 21 C -0.007 4.007 22 C -0.241 4.241 23 C -0.176 4.176 24 H 0.093 0.907 25 H 0.175 0.825 26 H 0.192 0.808 27 H 0.175 0.825 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.859 -9.854 1.594 14.030 hybrid contribution 0.811 1.175 0.252 1.450 sum -9.048 -8.679 1.846 12.673 Atomic orbital electron populations 1.69679 1.06875 1.29475 1.42775 1.26021 0.96174 1.01657 0.94358 0.85166 0.78341 0.76934 0.78989 1.19626 1.18732 1.20051 1.19443 0.94057 0.84335 1.51474 0.90694 1.42817 1.16764 1.04396 1.45797 1.20398 0.89155 0.86007 0.87452 1.90622 1.27149 1.86868 1.46450 1.22243 0.77587 0.85101 0.85435 1.90491 1.55670 1.63692 1.22786 1.20348 1.01327 0.99667 0.95729 1.21493 0.92224 0.91427 1.00770 1.21306 0.99039 1.01725 0.91075 1.21377 0.94172 0.94934 0.92389 1.98387 1.60252 1.80412 1.62918 1.21140 0.96189 0.95112 1.01339 1.21398 0.95548 0.98192 0.92304 1.21419 0.86358 1.04606 0.88287 1.23896 1.04142 0.94560 1.01498 1.22748 1.02353 0.93757 0.98773 0.90727 0.82478 0.80777 0.82526 0.86471 0.86885 0.89484 0.85841 0.87377 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -41.08 10.30 21.83 0.22 -40.85 16 2 C 0.03 1.30 4.93 85.26 0.42 1.72 16 3 Si 0.98 40.09 29.58 68.60 2.03 42.12 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 6 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.37 -20.25 9.15 84.59 0.77 -19.47 16 8 H 0.08 4.50 7.37 -2.91 -0.02 4.48 16 9 N -0.38 -19.85 2.89 -616.36 -1.78 -21.63 16 10 C 0.38 19.87 5.92 86.95 0.51 20.39 16 11 O -0.62 -36.93 16.77 -3.93 -0.07 -36.99 16 12 C 0.42 18.06 4.68 27.40 0.13 18.19 16 13 O -0.45 -19.49 14.71 -3.83 -0.06 -19.54 16 14 C -0.17 -5.80 5.88 -20.05 -0.12 -5.92 16 15 C -0.04 -1.05 9.60 22.57 0.22 -0.84 16 16 C -0.11 -2.30 9.81 22.25 0.22 -2.08 16 17 C 0.00 -0.04 6.33 22.44 0.14 0.10 16 18 Cl -0.05 -0.90 28.95 -2.72 -0.08 -0.97 16 19 C -0.12 -3.05 9.81 22.25 0.22 -2.84 16 20 C -0.06 -1.85 9.46 22.57 0.21 -1.64 16 21 C 0.10 4.30 3.69 44.99 0.17 4.46 16 22 C -0.20 -7.57 8.66 30.62 0.27 -7.31 16 23 C -0.14 -5.53 8.93 30.62 0.27 -5.26 16 24 H 0.28 12.58 8.30 -92.71 -0.77 11.81 16 25 H 0.16 3.59 7.66 -2.91 -0.02 3.56 16 26 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 27 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 28 H 0.12 4.56 7.15 -2.91 -0.02 4.54 16 29 H 0.11 5.08 7.70 -2.39 -0.02 5.06 16 30 H 0.09 3.57 5.77 -2.39 -0.01 3.56 16 31 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 32 H 0.11 3.83 8.14 -2.39 -0.02 3.82 16 33 H 0.07 3.08 8.14 -2.38 -0.02 3.06 16 Total: -1.00 -64.23 305.85 4.85 -59.38 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 1.15 Total: 18.98 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 3.43 Total: -0.48 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -1.56 Total: -62.49 kcal Atomic # 8 Polarization: -56.41 SS G_CDS: -0.12 Total: -56.53 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.97 kcal Total: -64.23 4.85 -59.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263918734.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.788 kcal (2) G-P(sol) polarization free energy of solvation -64.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds