Wall clock time and date at job start Tue Mar 31 2020 07:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40423 * 107.86638 * 179.90771 * 3 2 1 5 5 N 1.40097 * 125.97578 * 180.14410 * 4 3 2 6 6 C 1.34775 * 119.99575 * 0.23184 * 5 4 3 7 7 O 1.21574 * 120.00618 * 359.97438 * 6 5 4 8 8 C 1.47732 * 119.99766 * 180.02562 * 6 5 4 9 9 C 1.39360 * 124.12183 * 179.97438 * 8 6 5 10 10 N 1.30081 * 112.14503 * 180.02562 * 9 8 6 11 11 S 1.55924 * 108.76021 * 359.97438 * 10 9 8 12 12 N 1.31501 * 124.11377 * 359.70029 * 8 6 5 13 13 N 1.31225 * 108.04889 * 0.36224 * 4 3 2 14 14 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 15 15 C 1.46499 * 125.97361 * 359.92724 * 14 2 1 16 16 C 1.50701 * 109.47335 * 90.00276 * 15 14 2 17 17 H 1.08005 * 119.99355 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00498 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99599 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00380 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47046 * 59.99571 * 20 18 16 22 22 H 1.48496 * 109.46938 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46671 * 299.99987 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 27 27 H 1.07995 * 126.06740 * 0.03221 * 3 2 1 28 28 H 0.96995 * 119.99850 * 180.22823 * 5 4 3 29 29 H 1.08001 * 123.92078 * 0.03779 * 9 8 6 30 30 H 1.09005 * 109.46748 * 209.99555 * 15 14 2 31 31 H 1.09004 * 109.47398 * 329.99983 * 15 14 2 32 32 H 0.96994 * 119.99883 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0022 5 7 4.7731 1.4745 0.0057 6 6 4.6363 2.8152 0.0121 7 8 3.5272 3.3132 0.0143 8 6 5.8341 3.6799 0.0152 9 6 5.7927 5.0729 0.0213 10 7 6.9824 5.5988 0.0225 11 16 8.0380 4.4513 0.0172 12 7 7.0693 3.2288 0.0179 13 7 3.6337 -0.6577 -0.0045 14 7 2.3016 -1.0910 -0.0059 15 6 1.8499 -2.4846 -0.0120 16 6 1.6936 -2.9559 -1.4348 17 1 1.9088 -2.2842 -2.2528 18 6 1.2759 -4.2443 -1.6924 19 7 1.0143 -5.0623 -0.6963 20 14 1.0815 -4.8283 -3.4561 21 1 2.3864 -4.7271 -4.1577 22 1 0.6237 -6.2409 -3.4622 23 1 0.0791 -3.9806 -4.1504 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5090 27 1 1.9719 2.1210 0.0005 28 1 5.6580 1.0772 0.0036 29 1 4.8789 5.6487 0.0248 30 1 2.5851 -3.1070 0.4982 31 1 0.8917 -2.5583 0.5025 32 1 0.7201 -5.9686 -0.8775 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271142661.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:13 Heat of formation + Delta-G solvation = 105.659398 kcal Electronic energy + Delta-G solvation = -19959.197621 eV Core-core repulsion = 16663.151007 eV Total energy + Delta-G solvation = -3296.046614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47495 -40.60597 -38.94241 -35.07401 -33.95846 -33.30990 -31.46942 -30.88904 -28.01657 -26.61545 -26.39345 -24.08952 -22.73744 -21.13998 -20.09609 -19.53353 -19.34022 -17.39592 -16.71493 -16.39060 -16.21882 -15.65851 -15.33662 -14.95818 -14.49769 -14.20722 -13.99030 -13.10048 -12.57440 -12.49680 -12.38370 -12.22696 -11.85602 -11.60928 -11.53803 -11.44690 -11.37282 -11.12314 -10.84350 -10.54086 -10.28646 -10.14236 -9.78811 -9.60959 -9.52970 -8.65962 -8.00940 -7.53677 -6.27571 -4.35517 0.07391 1.03169 1.20698 1.27573 2.52927 2.60759 2.93879 3.22383 3.26342 3.30490 3.67861 3.72454 4.17604 4.28844 4.54979 4.76924 5.06117 5.15521 5.36751 5.66243 5.89319 6.02358 6.07035 6.14295 6.42118 6.46146 6.66070 6.88879 7.01946 7.32774 7.52723 7.64670 7.86071 7.98929 8.02230 8.58004 8.71810 9.31022 10.79770 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.028457 B = 0.003149 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.716497 B = 8890.728181 C = 9388.657157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.289 4.289 4 C 0.260 3.740 5 N -0.608 5.608 6 C 0.610 3.390 7 O -0.499 6.499 8 C 0.018 3.982 9 C 0.094 3.906 10 N -0.579 5.579 11 S 0.723 5.277 12 N -0.546 5.546 13 N -0.314 5.314 14 N -0.314 5.314 15 C 0.258 3.742 16 C -0.538 4.538 17 H 0.064 0.936 18 C 0.066 3.934 19 N -0.891 5.891 20 Si 0.907 3.093 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.274 1.274 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.161 0.839 28 H 0.419 0.581 29 H 0.217 0.783 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 17.780 2.572 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C -0.319 4.319 4 C 0.007 3.993 5 N -0.255 5.255 6 C 0.390 3.610 7 O -0.371 6.371 8 C -0.157 4.157 9 C -0.100 4.100 10 N -0.419 5.419 11 S 0.764 5.236 12 N -0.397 5.397 13 N -0.144 5.144 14 N -0.096 5.096 15 C 0.140 3.860 16 C -0.577 4.577 17 H 0.083 0.917 18 C -0.137 4.137 19 N -0.529 5.529 20 Si 0.734 3.266 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.199 1.199 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.178 0.822 28 H 0.256 0.744 29 H 0.234 0.766 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.392 16.877 2.625 20.531 hybrid contribution -1.774 -0.087 -0.947 2.013 sum 9.618 16.790 1.677 19.423 Atomic orbital electron populations 1.20392 0.87755 1.03977 1.02627 1.21080 0.95004 0.87042 1.00692 1.21243 0.89531 0.99910 1.21262 1.18891 0.86812 0.89647 1.03910 1.42103 1.08429 1.04341 1.70636 1.16541 0.86044 0.80898 0.77541 1.90786 1.24067 1.73822 1.48394 1.22374 0.90936 0.93993 1.08388 1.23769 0.96574 0.91336 0.98292 1.72276 1.07269 1.38607 1.23779 1.79086 1.17950 0.79387 1.47155 1.72464 1.07735 1.38816 1.20636 1.77292 1.00024 1.08321 1.28797 1.49056 1.00872 1.07918 1.51773 1.19720 0.96046 0.71201 0.98992 1.21285 1.47055 0.98024 0.91314 0.91748 1.24927 0.94624 0.96008 0.98170 1.69910 1.44754 1.07037 1.31217 0.86403 0.78833 0.77674 0.83716 1.19974 1.20946 1.19897 0.90985 0.89839 0.90511 0.82168 0.74407 0.76624 0.92918 0.92664 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.47 9.89 36.01 0.36 -1.12 16 2 C 0.09 1.92 6.92 -82.28 -0.57 1.35 16 3 C -0.29 -5.74 9.52 -39.83 -0.38 -6.12 16 4 C 0.26 5.24 8.11 -154.44 -1.25 3.99 16 5 N -0.61 -9.83 5.44 -12.02 -0.07 -9.89 16 6 C 0.61 8.89 7.79 -12.38 -0.10 8.79 16 7 O -0.50 -8.13 13.93 5.30 0.07 -8.06 16 8 C 0.02 0.21 6.81 -83.71 -0.57 -0.36 16 9 C 0.09 0.90 11.22 -17.88 -0.20 0.70 16 10 N -0.58 -5.38 11.41 19.43 0.22 -5.16 16 11 S 0.72 5.41 23.69 -107.50 -2.55 2.86 16 12 N -0.55 -5.74 11.00 23.18 0.26 -5.49 16 13 N -0.31 -7.21 12.59 31.43 0.40 -6.82 16 14 N -0.31 -7.34 3.59 -58.32 -0.21 -7.55 16 15 C 0.26 6.53 5.81 -5.19 -0.03 6.50 16 16 C -0.54 -14.68 9.39 -34.44 -0.32 -15.00 16 17 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 20 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.16 3.01 5.91 -52.49 -0.31 2.70 16 28 H 0.42 6.05 8.41 -40.82 -0.34 5.70 16 29 H 0.22 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.06 1.38 7.65 -51.93 -0.40 0.98 16 32 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -31.53 305.00 -7.41 -38.94 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -2.69 Total: 4.31 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -3.16 Total: 0.44 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 1.33 Total: -59.00 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.07 Total: -8.06 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -2.55 Total: 2.86 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.53 -7.41 -38.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271142661.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.598 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds