Wall clock time and date at job start Tue Mar 31 2020 07:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40423 * 107.86638 * 179.90771 * 3 2 1 5 5 N 1.40097 * 125.97578 * 180.14410 * 4 3 2 6 6 C 1.34775 * 119.99575 * 0.23184 * 5 4 3 7 7 O 1.21574 * 120.00618 * 359.97438 * 6 5 4 8 8 C 1.47732 * 119.99766 * 180.02562 * 6 5 4 9 9 C 1.39360 * 124.12183 * 179.97438 * 8 6 5 10 10 N 1.30081 * 112.14503 * 180.02562 * 9 8 6 11 11 S 1.55924 * 108.76021 * 359.97438 * 10 9 8 12 12 N 1.31501 * 124.11377 * 359.70029 * 8 6 5 13 13 N 1.31225 * 108.04889 * 0.36224 * 4 3 2 14 14 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 15 15 C 1.46499 * 125.97361 * 359.92724 * 14 2 1 16 16 C 1.50701 * 109.47335 * 90.00276 * 15 14 2 17 17 H 1.08005 * 119.99355 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00498 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99599 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00380 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47046 * 59.99571 * 20 18 16 22 22 H 1.48496 * 109.46938 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46671 * 299.99987 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 27 27 H 1.07995 * 126.06740 * 0.03221 * 3 2 1 28 28 H 0.96995 * 119.99850 * 180.22823 * 5 4 3 29 29 H 1.08001 * 123.92078 * 0.03779 * 9 8 6 30 30 H 1.09005 * 109.46748 * 209.99555 * 15 14 2 31 31 H 1.09004 * 109.47398 * 329.99983 * 15 14 2 32 32 H 0.96994 * 119.99883 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0022 5 7 4.7731 1.4745 0.0057 6 6 4.6363 2.8152 0.0121 7 8 3.5272 3.3132 0.0143 8 6 5.8341 3.6799 0.0152 9 6 5.7927 5.0729 0.0213 10 7 6.9824 5.5988 0.0225 11 16 8.0380 4.4513 0.0172 12 7 7.0693 3.2288 0.0179 13 7 3.6337 -0.6577 -0.0045 14 7 2.3016 -1.0910 -0.0059 15 6 1.8499 -2.4846 -0.0120 16 6 1.6936 -2.9559 -1.4348 17 1 1.9088 -2.2842 -2.2528 18 6 1.2759 -4.2443 -1.6924 19 7 1.0143 -5.0623 -0.6963 20 14 1.0815 -4.8283 -3.4561 21 1 2.3864 -4.7271 -4.1577 22 1 0.6237 -6.2409 -3.4622 23 1 0.0791 -3.9806 -4.1504 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5090 27 1 1.9719 2.1210 0.0005 28 1 5.6580 1.0772 0.0036 29 1 4.8789 5.6487 0.0248 30 1 2.5851 -3.1070 0.4982 31 1 0.8917 -2.5583 0.5025 32 1 0.7201 -5.9686 -0.8775 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271142661.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:12 Heat of formation + Delta-G solvation = 83.596308 kcal Electronic energy + Delta-G solvation = -19960.154349 eV Core-core repulsion = 16663.151007 eV Total energy + Delta-G solvation = -3297.003342 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.54555 -41.95708 -40.14654 -36.47847 -35.41527 -34.63111 -32.99925 -32.64069 -29.20278 -28.21561 -27.88442 -25.44690 -24.31267 -22.30796 -21.39846 -20.84532 -20.31400 -18.82820 -18.54086 -17.68976 -17.28901 -17.08302 -16.51208 -16.34701 -16.08078 -15.50682 -15.44179 -14.73134 -14.32258 -13.81313 -13.63796 -13.60139 -13.31095 -13.16298 -12.87286 -12.67330 -12.46542 -12.32367 -12.23226 -12.14689 -12.11865 -11.60122 -11.40591 -11.18617 -10.73160 -10.26776 -9.62263 -9.18585 -8.32934 -6.50513 -0.73274 0.28504 0.32482 0.59341 1.04698 1.26182 1.39040 1.40469 1.49728 1.62569 2.21201 2.24933 2.37451 2.97171 3.28231 3.50339 3.87107 3.97975 4.13701 4.46000 4.49522 4.71470 4.80160 4.86092 4.95183 4.97372 5.11577 5.21402 5.34937 5.53468 5.80663 5.85786 6.12960 6.24845 6.61352 6.77229 6.98819 7.20504 8.73133 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.028457 B = 0.003149 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.716497 B = 8890.728181 C = 9388.657157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.090 3.910 3 C -0.294 4.294 4 C 0.269 3.731 5 N -0.609 5.609 6 C 0.615 3.385 7 O -0.517 6.517 8 C -0.002 4.002 9 C 0.099 3.901 10 N -0.597 5.597 11 S 0.815 5.185 12 N -0.571 5.571 13 N -0.356 5.356 14 N -0.340 5.340 15 C 0.275 3.725 16 C -0.555 4.555 17 H 0.050 0.950 18 C 0.024 3.976 19 N -0.918 5.918 20 Si 0.971 3.029 21 H -0.276 1.276 22 H -0.273 1.273 23 H -0.264 1.264 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.175 0.825 28 H 0.426 0.574 29 H 0.232 0.768 30 H 0.024 0.976 31 H 0.055 0.945 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.070 19.511 1.880 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 C -0.324 4.324 4 C 0.016 3.984 5 N -0.258 5.258 6 C 0.397 3.603 7 O -0.390 6.390 8 C -0.174 4.174 9 C -0.092 4.092 10 N -0.439 5.439 11 S 0.856 5.144 12 N -0.424 5.424 13 N -0.186 5.186 14 N -0.123 5.123 15 C 0.156 3.844 16 C -0.593 4.593 17 H 0.068 0.932 18 C -0.178 4.178 19 N -0.556 5.556 20 Si 0.794 3.206 21 H -0.202 1.202 22 H -0.198 1.198 23 H -0.189 1.189 24 H 0.113 0.887 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.192 0.808 28 H 0.264 0.736 29 H 0.248 0.752 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.992 18.646 1.942 22.254 hybrid contribution -1.751 -0.463 -0.682 1.935 sum 10.240 18.182 1.260 20.906 Atomic orbital electron populations 1.20527 0.85094 1.04544 1.04249 1.21798 0.96788 0.86279 0.99175 1.21465 0.89362 1.00262 1.21348 1.19211 0.88362 0.89259 1.01602 1.42227 1.07612 1.04716 1.71202 1.16918 0.86999 0.80289 0.76087 1.90751 1.25318 1.74009 1.48964 1.21851 0.90058 0.94035 1.11493 1.23844 0.97290 0.90540 0.97512 1.72211 1.07589 1.39618 1.24463 1.78791 1.15456 0.77042 1.43128 1.72231 1.08038 1.41158 1.20945 1.77204 1.00301 1.09933 1.31209 1.48834 1.01603 1.07682 1.54141 1.19267 0.94978 0.72338 0.97804 1.21420 1.47685 0.98426 0.91786 0.93154 1.25726 0.93930 0.95869 1.02237 1.69994 1.44991 1.07441 1.33162 0.85417 0.78732 0.77696 0.78725 1.20172 1.19773 1.18900 0.88739 0.91466 0.87619 0.80817 0.73625 0.75219 0.95796 0.92768 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.76 9.89 71.24 0.70 -2.06 16 2 C 0.09 3.71 6.92 41.38 0.29 3.99 16 3 C -0.29 -11.62 9.52 22.11 0.21 -11.41 16 4 C 0.27 11.00 8.11 133.35 1.08 12.08 16 5 N -0.61 -19.67 5.44 -310.21 -1.69 -21.36 16 6 C 0.62 17.52 7.79 86.75 0.68 18.19 16 7 O -0.52 -16.44 13.93 -3.95 -0.05 -16.50 16 8 C 0.00 -0.04 6.81 41.97 0.29 0.24 16 9 C 0.10 1.71 11.22 85.22 0.96 2.67 16 10 N -0.60 -9.52 11.41 -92.45 -1.05 -10.58 16 11 S 0.81 9.88 23.69 -56.49 -1.34 8.55 16 12 N -0.57 -10.95 11.00 -80.57 -0.89 -11.83 16 13 N -0.36 -16.87 12.59 -54.48 -0.69 -17.56 16 14 N -0.34 -16.38 3.59 -338.44 -1.22 -17.60 16 15 C 0.27 14.49 5.81 85.63 0.50 14.98 16 16 C -0.55 -31.02 9.39 25.60 0.24 -30.78 16 17 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 18 C 0.02 1.28 5.46 84.65 0.46 1.74 16 19 N -0.92 -51.72 13.29 21.45 0.28 -51.43 16 20 Si 0.97 42.90 29.54 68.60 2.03 44.92 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 24 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.07 2.39 7.71 -2.39 -0.02 2.37 16 26 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 27 H 0.17 6.36 5.91 -2.91 -0.02 6.34 16 28 H 0.43 12.34 8.41 -92.71 -0.78 11.56 16 29 H 0.23 3.06 8.06 -2.91 -0.02 3.03 16 30 H 0.02 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.05 2.81 7.65 -2.38 -0.02 2.79 16 32 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -68.49 305.00 1.20 -67.29 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.41 Total: 16.44 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 5.40 Total: 9.66 kcal Atomic # 7 Polarization: -125.11 SS G_CDS: -5.25 Total: -130.35 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.05 Total: -16.50 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 9.88 SS G_CDS: -1.34 Total: 8.55 kcal Total: -68.49 1.20 -67.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271142661.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.886 kcal (2) G-P(sol) polarization free energy of solvation -68.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds