Wall clock time and date at job start Tue Mar 31 2020 07:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39783 * 120.07674 * 125.73032 * 3 2 1 5 5 C 1.37694 * 119.94083 * 179.69933 * 4 3 2 6 6 C 1.39078 * 120.09422 * 0.54627 * 5 4 3 7 7 N 1.39599 * 119.92406 * 179.72024 * 6 5 4 8 8 C 1.34772 * 119.99620 * 34.79831 * 7 6 5 9 9 O 1.21586 * 120.00325 * 355.46415 * 8 7 6 10 10 N 1.34780 * 120.00123 * 175.19673 * 8 7 6 11 11 C 1.46497 * 120.00220 * 180.27392 * 10 8 7 12 12 C 1.53007 * 109.46764 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.46572 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00001 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99423 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99188 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00067 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46980 * 90.00719 * 17 15 13 19 19 H 1.48505 * 109.46891 * 210.00275 * 17 15 13 20 20 H 1.48498 * 109.47441 * 330.00415 * 17 15 13 21 21 C 1.39189 * 120.15161 * 359.45089 * 6 5 4 22 22 Cl 1.73599 * 119.96850 * 180.29493 * 21 6 5 23 23 C 1.37802 * 120.05823 * 0.27461 * 21 6 5 24 24 H 1.08009 * 120.02818 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.95288 * 180.26674 * 5 4 3 26 26 H 0.96995 * 119.99909 * 214.79321 * 7 6 5 27 27 H 0.97003 * 119.99642 * 0.26911 * 10 8 7 28 28 H 1.09001 * 109.46812 * 299.99605 * 11 10 8 29 29 H 1.08995 * 109.47170 * 60.00138 * 11 10 8 30 30 H 1.08993 * 109.47540 * 299.99847 * 12 11 10 31 31 H 1.08995 * 109.46911 * 60.00290 * 12 11 10 32 32 H 0.97011 * 119.99366 * 179.97438 * 16 15 13 33 33 H 1.08000 * 120.04623 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 0.7073 -0.9819 5 6 4.6452 0.7111 -0.9756 6 6 5.3400 0.0036 -0.0005 7 7 6.7360 0.0051 -0.0009 8 6 7.4085 1.1080 -0.3853 9 8 6.8022 2.0727 -0.8098 10 7 8.7527 1.1437 -0.2942 11 6 9.4833 2.3448 -0.7063 12 6 10.9835 2.1243 -0.5022 13 6 11.7351 3.3596 -0.9268 14 1 11.1966 4.2160 -1.3048 15 6 13.1103 3.3959 -0.8336 16 7 13.7660 4.4742 -1.2037 17 14 14.0416 1.9143 -0.1804 18 1 14.3901 1.0125 -1.3075 19 1 15.2850 2.3686 0.4927 20 1 13.1903 1.1841 0.7929 21 6 4.6468 -0.7014 0.9791 22 17 5.5189 -1.5766 2.1986 23 6 3.2687 -0.7049 0.9821 24 1 2.7297 1.2536 -1.7423 25 1 5.1863 1.2606 -1.7316 26 1 7.2219 -0.7875 0.2754 27 1 9.2364 0.3741 0.0444 28 1 9.2853 2.5471 -1.7589 29 1 9.1560 3.1932 -0.1054 30 1 11.1812 1.9222 0.5504 31 1 11.3111 1.2758 -1.1028 32 1 14.7335 4.4999 -1.1377 33 1 2.7310 -1.2523 1.7421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273218725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:47 Heat of formation + Delta-G solvation = 17.336996 kcal Electronic energy + Delta-G solvation = -19375.092990 eV Core-core repulsion = 16040.879971 eV Total energy + Delta-G solvation = -3334.213018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94922 -39.26757 -37.18536 -36.61396 -35.41551 -34.80429 -32.92555 -31.36552 -30.86569 -29.59317 -25.39060 -23.87012 -23.37011 -21.06663 -20.93797 -19.46555 -18.64859 -17.90692 -16.90465 -16.21702 -15.59712 -15.30524 -15.04295 -14.57663 -14.34115 -14.21531 -14.07109 -13.88478 -13.68059 -13.29902 -13.19397 -12.75397 -12.67308 -12.02234 -11.79773 -11.58036 -11.43490 -11.33194 -10.73431 -10.47655 -10.40416 -10.07972 -9.94410 -9.41036 -9.31694 -8.88783 -8.67256 -8.41868 -6.16787 -4.17563 0.26395 0.74075 1.59803 2.36237 2.38745 2.51375 3.11934 3.20472 3.28113 3.29441 3.44650 3.52582 4.11958 4.28963 4.32078 4.54255 4.78255 4.91210 5.16016 5.25080 5.47949 5.65720 5.76969 5.90937 5.99844 6.10186 6.41355 6.45707 6.53910 6.68061 7.07272 7.13874 7.14308 7.58940 7.88369 8.36749 8.47320 8.87296 9.42822 10.96090 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.029607 B = 0.002904 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.485228 B = 9641.182691 C =10464.988421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.261 3.739 3 C -0.046 4.046 4 C -0.041 4.041 5 C -0.114 4.114 6 C 0.221 3.779 7 N -0.688 5.688 8 C 0.700 3.300 9 O -0.571 6.571 10 N -0.730 5.730 11 C 0.146 3.854 12 C -0.022 4.022 13 C -0.524 4.524 14 H 0.077 0.923 15 C 0.070 3.930 16 N -0.897 5.897 17 Si 0.882 3.118 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.078 4.078 22 Cl -0.054 7.054 23 C -0.040 4.040 24 H 0.143 0.857 25 H 0.165 0.835 26 H 0.411 0.589 27 H 0.396 0.604 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.018 0.982 32 H 0.265 0.735 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.419 -14.717 4.218 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.054 4.054 3 C -0.051 4.051 4 C -0.063 4.063 5 C -0.134 4.134 6 C 0.122 3.878 7 N -0.335 5.335 8 C 0.400 3.600 9 O -0.447 6.447 10 N -0.383 5.383 11 C 0.024 3.976 12 C -0.060 4.060 13 C -0.563 4.563 14 H 0.095 0.905 15 C -0.133 4.133 16 N -0.535 5.535 17 Si 0.710 3.290 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.108 4.108 22 Cl -0.025 7.025 23 C -0.062 4.062 24 H 0.161 0.839 25 H 0.182 0.818 26 H 0.248 0.752 27 H 0.229 0.771 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.303 -13.748 3.916 24.019 hybrid contribution 1.723 -1.556 0.826 2.464 sum -17.580 -15.304 4.742 23.785 Atomic orbital electron populations 1.81275 1.11950 1.08463 1.07747 1.25499 0.92371 0.93712 0.93840 1.15779 0.84511 1.04955 0.99885 1.21211 0.93658 0.95099 0.96310 1.21381 0.93369 1.00158 0.98529 1.17469 0.82755 0.95516 0.92105 1.42764 1.04079 1.16468 1.70176 1.15969 0.82664 0.82263 0.79071 1.90924 1.67364 1.35066 1.51382 1.45598 1.03942 1.20429 1.68307 1.21519 0.92291 0.83978 0.99833 1.19809 0.90328 0.98602 0.97247 1.20879 0.91707 0.99804 1.43873 0.90526 1.25001 0.97610 0.95964 0.94688 1.69902 1.08139 1.27898 1.47516 0.86752 0.79537 0.83199 0.79562 1.20219 1.21253 1.19100 1.20476 0.92233 1.04418 0.93642 1.98390 1.76122 1.74609 1.53422 1.20761 0.91204 0.96879 0.97347 0.83921 0.81771 0.75225 0.77093 0.91650 0.91655 0.95914 0.96357 0.92482 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.86 18.54 41.84 0.78 -4.08 16 2 C 0.26 2.42 15.33 -22.47 -0.34 2.08 16 3 C -0.05 -0.36 5.74 -106.82 -0.61 -0.97 16 4 C -0.04 -0.32 9.75 -39.20 -0.38 -0.70 16 5 C -0.11 -1.10 8.67 -39.47 -0.34 -1.45 16 6 C 0.22 2.16 6.30 -83.66 -0.53 1.64 16 7 N -0.69 -6.99 5.03 -14.18 -0.07 -7.06 16 8 C 0.70 9.76 8.40 -86.92 -0.73 9.03 16 9 O -0.57 -9.79 13.74 5.29 0.07 -9.71 16 10 N -0.73 -10.35 5.56 -65.23 -0.36 -10.71 16 11 C 0.15 2.68 5.61 -4.04 -0.02 2.66 16 12 C -0.02 -0.47 4.16 -27.88 -0.12 -0.58 16 13 C -0.52 -14.01 9.66 -34.44 -0.33 -14.34 16 14 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -26.53 13.96 55.43 0.77 -25.75 16 17 Si 0.88 20.24 27.47 -169.99 -4.67 15.57 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -5.72 6.54 56.52 0.37 -5.35 16 21 C -0.08 -0.65 6.33 -39.39 -0.25 -0.90 16 22 Cl -0.05 -0.43 27.93 -51.86 -1.45 -1.87 16 23 C -0.04 -0.29 9.52 -39.17 -0.37 -0.66 16 24 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 25 H 0.16 1.85 6.18 -52.49 -0.32 1.53 16 26 H 0.41 3.16 8.08 -40.82 -0.33 2.83 16 27 H 0.40 4.50 8.49 -40.82 -0.35 4.15 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 31 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 314.14 15.07 4.73 4.73 Total: -1.00 -31.42 314.14 -7.37 -38.79 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -3.04 Total: 2.49 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -4.13 Total: -2.38 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 1.12 Total: -47.61 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.45 Total: -1.87 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.42 -7.37 -38.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273218725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.124 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds