Wall clock time and date at job start Tue Mar 31 2020 07:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39783 * 120.07674 * 125.73032 * 3 2 1 5 5 C 1.37694 * 119.94083 * 179.69933 * 4 3 2 6 6 C 1.39078 * 120.09422 * 0.54627 * 5 4 3 7 7 N 1.39599 * 119.92406 * 179.72024 * 6 5 4 8 8 C 1.34772 * 119.99620 * 34.79831 * 7 6 5 9 9 O 1.21586 * 120.00325 * 355.46415 * 8 7 6 10 10 N 1.34780 * 120.00123 * 175.19673 * 8 7 6 11 11 C 1.46497 * 120.00220 * 180.27392 * 10 8 7 12 12 C 1.53007 * 109.46764 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.46572 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00001 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99423 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99188 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00067 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46980 * 90.00719 * 17 15 13 19 19 H 1.48505 * 109.46891 * 210.00275 * 17 15 13 20 20 H 1.48498 * 109.47441 * 330.00415 * 17 15 13 21 21 C 1.39189 * 120.15161 * 359.45089 * 6 5 4 22 22 Cl 1.73599 * 119.96850 * 180.29493 * 21 6 5 23 23 C 1.37802 * 120.05823 * 0.27461 * 21 6 5 24 24 H 1.08009 * 120.02818 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.95288 * 180.26674 * 5 4 3 26 26 H 0.96995 * 119.99909 * 214.79321 * 7 6 5 27 27 H 0.97003 * 119.99642 * 0.26911 * 10 8 7 28 28 H 1.09001 * 109.46812 * 299.99605 * 11 10 8 29 29 H 1.08995 * 109.47170 * 60.00138 * 11 10 8 30 30 H 1.08993 * 109.47540 * 299.99847 * 12 11 10 31 31 H 1.08995 * 109.46911 * 60.00290 * 12 11 10 32 32 H 0.97011 * 119.99366 * 179.97438 * 16 15 13 33 33 H 1.08000 * 120.04623 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 0.7073 -0.9819 5 6 4.6452 0.7111 -0.9756 6 6 5.3400 0.0036 -0.0005 7 7 6.7360 0.0051 -0.0009 8 6 7.4085 1.1080 -0.3853 9 8 6.8022 2.0727 -0.8098 10 7 8.7527 1.1437 -0.2942 11 6 9.4833 2.3448 -0.7063 12 6 10.9835 2.1243 -0.5022 13 6 11.7351 3.3596 -0.9268 14 1 11.1966 4.2160 -1.3048 15 6 13.1103 3.3959 -0.8336 16 7 13.7660 4.4742 -1.2037 17 14 14.0416 1.9143 -0.1804 18 1 14.3901 1.0125 -1.3075 19 1 15.2850 2.3686 0.4927 20 1 13.1903 1.1841 0.7929 21 6 4.6468 -0.7014 0.9791 22 17 5.5189 -1.5766 2.1986 23 6 3.2687 -0.7049 0.9821 24 1 2.7297 1.2536 -1.7423 25 1 5.1863 1.2606 -1.7316 26 1 7.2219 -0.7875 0.2754 27 1 9.2364 0.3741 0.0444 28 1 9.2853 2.5471 -1.7589 29 1 9.1560 3.1932 -0.1054 30 1 11.1812 1.9222 0.5504 31 1 11.3111 1.2758 -1.1028 32 1 14.7335 4.4999 -1.1377 33 1 2.7310 -1.2523 1.7421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273218725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:46 Heat of formation + Delta-G solvation = -3.341089 kcal Electronic energy + Delta-G solvation = -19375.989659 eV Core-core repulsion = 16040.879971 eV Total energy + Delta-G solvation = -3335.109687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.87615 -40.15387 -37.93591 -37.38062 -36.70083 -35.83763 -34.79177 -32.31068 -31.99135 -30.74119 -26.94475 -24.89537 -24.07519 -22.64386 -22.11253 -20.19035 -19.70492 -18.93611 -18.74469 -17.09950 -16.58016 -16.32058 -16.11203 -16.04661 -15.53182 -15.22024 -15.10145 -14.80375 -14.77204 -14.56559 -14.16773 -13.97584 -13.51036 -13.32163 -13.04848 -12.71960 -12.46263 -12.15697 -12.13658 -12.08312 -11.74238 -11.60962 -11.46315 -11.20068 -10.75743 -10.13752 -9.96704 -9.25369 -8.26786 -6.33657 -0.45095 0.09347 0.93747 1.42016 1.43295 1.44696 1.55375 1.61821 1.67923 2.10500 2.39595 2.73224 2.79203 3.08816 3.11128 3.63826 3.93347 4.05080 4.23694 4.36202 4.49676 4.57900 4.80234 4.83128 4.97918 5.10380 5.11969 5.27129 5.43967 5.46025 5.64437 5.66829 5.81863 6.25808 6.40847 6.73934 6.90098 7.30671 7.39095 8.89824 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.029607 B = 0.002904 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.485228 B = 9641.182691 C =10464.988421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.286 3.714 3 C -0.042 4.042 4 C -0.031 4.031 5 C -0.126 4.126 6 C 0.206 3.794 7 N -0.672 5.672 8 C 0.703 3.297 9 O -0.606 6.606 10 N -0.722 5.722 11 C 0.164 3.836 12 C -0.014 4.014 13 C -0.536 4.536 14 H 0.031 0.969 15 C 0.003 3.997 16 N -0.951 5.951 17 Si 0.958 3.042 18 H -0.266 1.266 19 H -0.291 1.291 20 H -0.235 1.235 21 C -0.075 4.075 22 Cl -0.046 7.046 23 C -0.028 4.028 24 H 0.160 0.840 25 H 0.147 0.853 26 H 0.424 0.576 27 H 0.413 0.587 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.267 0.733 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.965 -17.703 5.607 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.029 4.029 3 C -0.047 4.047 4 C -0.052 4.052 5 C -0.147 4.147 6 C 0.107 3.893 7 N -0.320 5.320 8 C 0.403 3.597 9 O -0.485 6.485 10 N -0.376 5.376 11 C 0.040 3.960 12 C -0.052 4.052 13 C -0.575 4.575 14 H 0.049 0.951 15 C -0.194 4.194 16 N -0.592 5.592 17 Si 0.780 3.220 18 H -0.191 1.191 19 H -0.217 1.217 20 H -0.157 1.157 21 C -0.105 4.105 22 Cl -0.017 7.017 23 C -0.050 4.050 24 H 0.178 0.822 25 H 0.164 0.836 26 H 0.264 0.736 27 H 0.249 0.751 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -19.891 -16.802 5.327 26.577 hybrid contribution 1.796 -0.568 0.365 1.919 sum -18.095 -17.370 5.692 25.721 Atomic orbital electron populations 1.81311 1.13134 1.09887 1.09111 1.25522 0.92278 0.92484 0.92612 1.15735 0.83693 1.05150 1.00124 1.21325 0.92942 0.94479 0.96441 1.21259 0.94076 1.00700 0.98642 1.17612 0.82359 0.96432 0.92896 1.42450 1.04358 1.15777 1.69415 1.15979 0.82351 0.82665 0.78681 1.90915 1.68020 1.36738 1.52792 1.45160 1.04160 1.19734 1.68576 1.20967 0.91255 0.85117 0.98694 1.19666 0.91173 0.96385 0.97978 1.21254 0.92275 1.00671 1.43260 0.95069 1.26077 0.98813 0.99536 0.95018 1.70082 1.08557 1.30865 1.49648 0.85559 0.77839 0.78923 0.79658 1.19074 1.21685 1.15743 1.20431 0.92498 1.04144 0.93398 1.98398 1.76027 1.74334 1.52971 1.20978 0.90816 0.95987 0.97204 0.82203 0.83583 0.73618 0.75064 0.93183 0.93512 0.94467 0.94452 0.92443 0.81472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.04 18.54 19.00 0.35 -9.69 16 2 C 0.29 4.75 15.33 88.33 1.35 6.10 16 3 C -0.04 -0.56 5.74 -21.29 -0.12 -0.68 16 4 C -0.03 -0.43 9.75 22.51 0.22 -0.21 16 5 C -0.13 -2.32 8.67 22.34 0.19 -2.12 16 6 C 0.21 3.66 6.30 38.33 0.24 3.91 16 7 N -0.67 -12.41 5.03 -317.04 -1.60 -14.01 16 8 C 0.70 18.82 8.40 179.05 1.50 20.32 16 9 O -0.61 -20.78 13.74 -3.99 -0.05 -20.84 16 10 N -0.72 -19.25 5.56 -478.54 -2.66 -21.91 16 11 C 0.16 5.98 5.61 86.38 0.48 6.46 16 12 C -0.01 -0.58 4.16 29.85 0.12 -0.46 16 13 C -0.54 -29.20 9.66 25.60 0.25 -28.95 16 14 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 15 C 0.00 0.14 5.47 84.66 0.46 0.61 16 16 N -0.95 -57.98 13.96 21.45 0.30 -57.68 16 17 Si 0.96 40.68 27.47 68.60 1.88 42.56 16 18 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.23 -8.70 6.54 99.48 0.65 -8.05 16 21 C -0.07 -1.06 6.33 22.40 0.14 -0.91 16 22 Cl -0.05 -0.60 27.93 -2.72 -0.08 -0.67 16 23 C -0.03 -0.33 9.52 22.54 0.21 -0.12 16 24 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 25 H 0.15 3.31 6.18 -2.91 -0.02 3.30 16 26 H 0.42 5.42 8.08 -92.71 -0.75 4.67 16 27 H 0.41 8.14 8.49 -92.71 -0.79 7.35 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.04 1.44 7.20 -2.39 -0.02 1.42 16 31 H 0.04 1.41 7.57 -2.39 -0.02 1.39 16 32 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 33 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -70.02 314.14 2.81 -67.21 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -0.40 Total: 11.07 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 5.07 Total: 3.95 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -3.60 Total: -103.28 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.84 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.88 Total: 42.56 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.67 kcal Total: -70.02 2.81 -67.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273218725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.864 kcal (2) G-P(sol) polarization free energy of solvation -70.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds