Wall clock time and date at job start Tue Mar 31 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86803 * 120.00064 * 2 1 4 4 H 1.48496 * 109.47110 * 269.99965 * 3 2 1 5 5 H 1.48497 * 109.47135 * 30.00377 * 3 2 1 6 6 H 1.48499 * 109.46836 * 150.00084 * 3 2 1 7 7 C 1.38797 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00249 * 179.97438 * 7 2 1 9 9 S 1.76209 * 119.99850 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99669 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46989 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99381 * 359.97438 * 11 10 9 13 13 O 1.34254 * 120.00042 * 179.97438 * 11 10 9 14 14 C 1.35937 * 116.99923 * 185.77575 * 13 11 10 15 15 C 1.38861 * 119.90229 * 249.00306 * 14 13 11 16 16 C 1.38362 * 120.13903 * 179.97438 * 15 14 13 17 17 C 1.37633 * 120.03277 * 0.02562 * 16 15 14 18 18 C 1.39688 * 120.41562 * 359.97438 * 17 16 15 19 19 C 1.38448 * 119.89986 * 68.98252 * 14 13 11 20 20 C 1.47574 * 108.27559 * 180.02562 * 18 17 16 21 21 O 1.21549 * 124.85935 * 179.97438 * 20 18 17 22 22 N 1.34417 * 110.28449 * 0.02562 * 20 18 17 23 23 C 1.46731 * 108.75929 * 359.97438 * 22 20 18 24 24 H 0.97003 * 119.99828 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47573 * 60.00171 * 10 9 7 26 26 H 1.09007 * 109.47083 * 299.99510 * 10 9 7 27 27 H 1.08005 * 119.93089 * 359.70612 * 15 14 13 28 28 H 1.07996 * 119.98873 * 179.97438 * 16 15 14 29 29 H 1.07992 * 120.11135 * 0.04493 * 19 14 13 30 30 H 0.96998 * 125.62304 * 180.02562 * 22 20 18 31 31 H 1.09000 * 110.09567 * 119.20126 * 23 22 20 32 32 H 1.08999 * 110.09442 * 240.74066 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7955 -5.5015 -0.0011 13 8 2.8408 -6.3391 -0.0018 14 6 2.3029 -7.5815 -0.1242 15 6 2.3365 -8.4595 0.9511 16 6 1.7899 -9.7250 0.8320 17 6 1.2117 -10.1168 -0.3539 18 6 1.1711 -9.2436 -1.4434 19 6 1.7227 -7.9675 -1.3206 20 6 0.4983 -9.9309 -2.5626 21 8 0.3009 -9.4443 -3.6588 22 7 0.1341 -11.1718 -2.1960 23 6 0.5429 -11.3917 -0.8041 24 1 -0.4850 0.8401 0.0004 25 1 3.1244 -3.7314 0.8894 26 1 3.1244 -3.7314 -0.8906 27 1 2.7940 -8.1554 1.8809 28 1 1.8177 -10.4060 1.6697 29 1 1.6977 -7.2838 -2.1561 30 1 -0.3230 -11.8160 -2.7591 31 1 -0.3307 -11.5950 -0.1848 32 1 1.2441 -12.2243 -0.7468 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276422368.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:54 Heat of formation + Delta-G solvation = -67.442299 kcal Electronic energy + Delta-G solvation = -19651.975282 eV Core-core repulsion = 16283.836913 eV Total energy + Delta-G solvation = -3368.138369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.59605 -40.68815 -38.12500 -36.82645 -35.65571 -32.51586 -31.41187 -30.87859 -29.54180 -26.84320 -25.59914 -24.52352 -22.78073 -21.00668 -20.66125 -18.21027 -17.85386 -17.77185 -16.65309 -16.39985 -16.18693 -16.03897 -15.26127 -14.87158 -14.66755 -14.48584 -14.16422 -13.84963 -13.67746 -13.33193 -12.91402 -12.72285 -12.43015 -12.20630 -11.88203 -11.15556 -11.13318 -11.09168 -10.85117 -10.29564 -10.16550 -9.95529 -9.70387 -9.32147 -9.14384 -8.86525 -8.41658 -6.65333 -6.30261 -4.04016 0.41348 0.83322 2.28954 2.45296 2.68395 2.84394 3.19438 3.21035 3.26805 3.39020 3.57019 3.79096 4.03482 4.11618 4.48948 4.69835 4.86520 4.88614 4.91044 5.05796 5.13271 5.29460 5.42326 5.60038 5.67386 5.71099 5.84009 5.97806 5.99446 6.25326 6.41463 6.59580 6.69663 7.52523 7.90867 8.03099 8.27228 9.15203 10.77200 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.033877 B = 0.003034 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.328544 B = 9227.306672 C = 9660.621476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.923 3.077 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.077 0.923 9 S -0.055 6.055 10 C -0.127 4.127 11 C 0.475 3.525 12 O -0.465 6.465 13 O -0.296 6.296 14 C 0.091 3.909 15 C -0.086 4.086 16 C -0.087 4.087 17 C -0.092 4.092 18 C -0.145 4.145 19 C -0.050 4.050 20 C 0.564 3.436 21 O -0.520 6.520 22 N -0.725 5.725 23 C 0.144 3.856 24 H 0.270 0.730 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.426 0.574 31 H 0.098 0.902 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.000 -23.540 2.442 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.749 3.251 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.685 4.685 8 H 0.095 0.905 9 S 0.171 5.829 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.347 6.347 13 O -0.213 6.213 14 C 0.049 3.951 15 C -0.104 4.104 16 C -0.106 4.106 17 C -0.093 4.093 18 C -0.148 4.148 19 C -0.069 4.069 20 C 0.351 3.649 21 O -0.396 6.396 22 N -0.383 5.383 23 C 0.020 3.980 24 H 0.080 0.920 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.162 0.838 28 H 0.159 0.841 29 H 0.157 0.843 30 H 0.267 0.733 31 H 0.116 0.884 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.242 -23.381 1.912 23.682 hybrid contribution 1.650 0.964 -0.200 1.922 sum 4.893 -22.417 1.712 23.008 Atomic orbital electron populations 1.70009 1.06007 1.27732 1.46403 1.25011 0.95075 0.99155 0.94247 0.86103 0.79387 0.81186 0.78468 1.20148 1.20693 1.19548 1.22834 0.95049 0.91014 1.59644 0.90459 1.85497 1.03886 0.96585 1.96920 1.23346 1.07376 0.89831 1.06903 1.23854 0.85300 0.86654 0.72491 1.90726 1.16493 1.84881 1.42575 1.84710 1.40005 1.12661 1.83923 1.18387 0.98719 0.84765 0.93260 1.21301 0.98014 0.93406 0.97722 1.20090 0.98267 0.95867 0.96326 1.20475 0.98529 0.95861 0.94458 1.20089 1.03507 0.95165 0.96077 1.21026 0.93633 0.94912 0.97378 1.18202 0.78177 0.81769 0.86783 1.90844 1.55968 1.69295 1.23490 1.45744 1.61603 1.16216 1.14738 1.20432 0.99760 0.95286 0.82511 0.91999 0.87465 0.87450 0.83759 0.84113 0.84274 0.73296 0.88385 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.61 13.22 55.49 0.73 -24.87 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 8 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.06 -1.45 20.58 -107.50 -2.21 -3.66 16 10 C -0.13 -2.51 6.27 36.01 0.23 -2.28 16 11 C 0.48 8.97 7.75 36.01 0.28 9.25 16 12 O -0.46 -10.17 15.27 -18.75 -0.29 -10.46 16 13 O -0.30 -4.69 10.03 -23.63 -0.24 -4.93 16 14 C 0.09 1.29 5.27 -39.27 -0.21 1.09 16 15 C -0.09 -0.92 9.99 -39.31 -0.39 -1.31 16 16 C -0.09 -0.72 10.03 -39.76 -0.40 -1.11 16 17 C -0.09 -0.85 6.37 -104.23 -0.66 -1.51 16 18 C -0.14 -1.89 6.26 -105.06 -0.66 -2.55 16 19 C -0.05 -0.74 9.37 -39.01 -0.37 -1.11 16 20 C 0.56 7.54 8.35 -12.61 -0.11 7.44 16 21 O -0.52 -9.11 18.04 5.32 0.10 -9.02 16 22 N -0.73 -6.00 6.41 -62.38 -0.40 -6.40 16 23 C 0.14 0.83 7.76 -5.00 -0.04 0.79 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.11 1.92 8.14 -51.92 -0.42 1.49 16 26 H 0.11 1.95 8.14 -51.91 -0.42 1.53 16 27 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 28 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 29 H 0.14 2.20 8.06 -52.49 -0.42 1.77 16 30 H 0.43 2.44 8.96 -40.82 -0.37 2.08 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 308.63 15.07 4.65 4.65 Total: -1.00 -35.80 308.63 -7.67 -43.47 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -2.87 Total: -0.86 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.13 Total: -3.90 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.33 Total: -31.27 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.43 Total: -24.40 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.80 -7.67 -43.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276422368.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.969 kcal (2) G-P(sol) polarization free energy of solvation -35.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds