Wall clock time and date at job start Tue Mar 31 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86803 * 120.00064 * 2 1 4 4 H 1.48496 * 109.47110 * 269.99965 * 3 2 1 5 5 H 1.48497 * 109.47135 * 30.00377 * 3 2 1 6 6 H 1.48499 * 109.46836 * 150.00084 * 3 2 1 7 7 C 1.38797 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00249 * 179.97438 * 7 2 1 9 9 S 1.76209 * 119.99850 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99669 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46989 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99381 * 359.97438 * 11 10 9 13 13 O 1.34254 * 120.00042 * 179.97438 * 11 10 9 14 14 C 1.35937 * 116.99923 * 185.77575 * 13 11 10 15 15 C 1.38861 * 119.90229 * 249.00306 * 14 13 11 16 16 C 1.38362 * 120.13903 * 179.97438 * 15 14 13 17 17 C 1.37633 * 120.03277 * 0.02562 * 16 15 14 18 18 C 1.39688 * 120.41562 * 359.97438 * 17 16 15 19 19 C 1.38448 * 119.89986 * 68.98252 * 14 13 11 20 20 C 1.47574 * 108.27559 * 180.02562 * 18 17 16 21 21 O 1.21549 * 124.85935 * 179.97438 * 20 18 17 22 22 N 1.34417 * 110.28449 * 0.02562 * 20 18 17 23 23 C 1.46731 * 108.75929 * 359.97438 * 22 20 18 24 24 H 0.97003 * 119.99828 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47573 * 60.00171 * 10 9 7 26 26 H 1.09007 * 109.47083 * 299.99510 * 10 9 7 27 27 H 1.08005 * 119.93089 * 359.70612 * 15 14 13 28 28 H 1.07996 * 119.98873 * 179.97438 * 16 15 14 29 29 H 1.07992 * 120.11135 * 0.04493 * 19 14 13 30 30 H 0.96998 * 125.62304 * 180.02562 * 22 20 18 31 31 H 1.09000 * 110.09567 * 119.20126 * 23 22 20 32 32 H 1.08999 * 110.09442 * 240.74066 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7955 -5.5015 -0.0011 13 8 2.8408 -6.3391 -0.0018 14 6 2.3029 -7.5815 -0.1242 15 6 2.3365 -8.4595 0.9511 16 6 1.7899 -9.7250 0.8320 17 6 1.2117 -10.1168 -0.3539 18 6 1.1711 -9.2436 -1.4434 19 6 1.7227 -7.9675 -1.3206 20 6 0.4983 -9.9309 -2.5626 21 8 0.3009 -9.4443 -3.6588 22 7 0.1341 -11.1718 -2.1960 23 6 0.5429 -11.3917 -0.8041 24 1 -0.4850 0.8401 0.0004 25 1 3.1244 -3.7314 0.8894 26 1 3.1244 -3.7314 -0.8906 27 1 2.7940 -8.1554 1.8809 28 1 1.8177 -10.4060 1.6697 29 1 1.6977 -7.2838 -2.1561 30 1 -0.3230 -11.8160 -2.7591 31 1 -0.3307 -11.5950 -0.1848 32 1 1.2441 -12.2243 -0.7468 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276422368.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:53 Heat of formation + Delta-G solvation = -93.363437 kcal Electronic energy + Delta-G solvation = -19653.099307 eV Core-core repulsion = 16283.836913 eV Total energy + Delta-G solvation = -3369.262394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.66798 -41.80061 -39.24240 -38.09834 -36.61746 -34.62674 -32.33054 -32.01912 -30.82961 -27.79925 -27.55345 -25.49171 -23.84815 -22.03498 -21.66507 -20.00811 -19.30056 -18.68977 -17.96986 -17.62404 -17.20684 -16.91012 -16.82098 -16.50736 -15.92719 -15.84235 -15.25900 -14.80930 -14.66883 -14.50875 -14.43759 -14.14220 -13.52798 -13.23861 -13.16714 -12.90963 -12.84092 -12.67779 -12.35275 -11.82304 -11.80596 -11.19340 -11.17269 -10.55712 -10.41852 -10.16232 -9.73744 -8.77024 -8.38968 -6.19625 -0.48484 -0.13109 0.92677 0.98803 1.39540 1.43123 1.52787 1.57943 1.84849 2.13474 2.22219 2.59487 2.96440 2.98457 3.24030 3.28068 3.61110 3.70709 3.98057 4.10924 4.24081 4.33369 4.38251 4.56590 4.59963 4.64089 4.83827 4.97199 5.09808 5.24562 5.40004 5.56534 5.65844 5.88935 6.16783 6.61674 7.02758 7.04976 8.70335 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.033877 B = 0.003034 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.328544 B = 9227.306672 C = 9660.621476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 1.001 2.999 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.548 4.548 8 H 0.089 0.911 9 S -0.138 6.138 10 C -0.106 4.106 11 C 0.483 3.517 12 O -0.502 6.502 13 O -0.284 6.284 14 C 0.050 3.950 15 C -0.079 4.079 16 C -0.069 4.069 17 C -0.070 4.070 18 C -0.180 4.180 19 C -0.077 4.077 20 C 0.549 3.451 21 O -0.583 6.583 22 N -0.704 5.704 23 C 0.142 3.858 24 H 0.273 0.727 25 H 0.132 0.868 26 H 0.125 0.875 27 H 0.170 0.830 28 H 0.197 0.803 29 H 0.105 0.895 30 H 0.439 0.561 31 H 0.137 0.863 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.563 -26.214 4.728 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.179 1.179 7 C -0.695 4.695 8 H 0.107 0.893 9 S 0.089 5.911 10 C -0.254 4.254 11 C 0.327 3.673 12 O -0.387 6.387 13 O -0.200 6.200 14 C 0.008 3.992 15 C -0.097 4.097 16 C -0.087 4.087 17 C -0.071 4.071 18 C -0.183 4.183 19 C -0.097 4.097 20 C 0.337 3.663 21 O -0.465 6.465 22 N -0.360 5.360 23 C 0.020 3.980 24 H 0.082 0.918 25 H 0.150 0.850 26 H 0.143 0.857 27 H 0.188 0.812 28 H 0.214 0.786 29 H 0.124 0.876 30 H 0.283 0.717 31 H 0.154 0.846 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.824 -26.133 4.227 26.909 hybrid contribution 1.181 1.511 -0.867 2.104 sum 6.005 -24.623 3.360 25.566 Atomic orbital electron populations 1.70170 1.07993 1.28838 1.47678 1.26142 0.95983 1.03353 0.93484 0.84912 0.78269 0.75776 0.78784 1.19453 1.20229 1.17946 1.23199 0.95598 0.91341 1.59394 0.89321 1.85624 1.09046 0.99216 1.97208 1.23124 1.04521 0.88860 1.08890 1.23586 0.84906 0.87203 0.71643 1.90707 1.18077 1.85524 1.44441 1.84670 1.38925 1.13099 1.83278 1.18752 1.01505 0.84333 0.94585 1.21734 0.97103 0.93686 0.97195 1.20666 0.95552 0.95250 0.97217 1.21037 0.96570 0.96225 0.93280 1.20224 1.04760 0.95437 0.97896 1.20937 0.95786 0.95870 0.97141 1.18527 0.78323 0.83264 0.86188 1.90797 1.58869 1.71009 1.25789 1.45764 1.59706 1.14360 1.16155 1.20929 1.01940 0.94366 0.80767 0.91831 0.84972 0.85747 0.81231 0.78582 0.87645 0.71742 0.84567 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.25 13.22 21.65 0.29 -54.96 16 2 C 0.02 0.87 5.49 84.86 0.47 1.33 16 3 Si 1.00 43.05 29.55 68.60 2.03 45.08 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 7 C -0.55 -30.71 9.50 67.95 0.65 -30.06 16 8 H 0.09 4.59 7.80 -2.91 -0.02 4.56 16 9 S -0.14 -7.52 20.58 -56.49 -1.16 -8.69 16 10 C -0.11 -4.23 6.27 71.24 0.45 -3.79 16 11 C 0.48 18.83 7.75 71.24 0.55 19.38 16 12 O -0.50 -23.13 15.27 21.94 0.34 -22.79 16 13 O -0.28 -9.14 10.03 4.49 0.05 -9.09 16 14 C 0.05 1.43 5.27 22.47 0.12 1.54 16 15 C -0.08 -1.47 9.99 22.45 0.22 -1.24 16 16 C -0.07 -0.80 10.03 22.16 0.22 -0.57 16 17 C -0.07 -1.03 6.37 -19.61 -0.13 -1.16 16 18 C -0.18 -4.71 6.26 -20.15 -0.13 -4.84 16 19 C -0.08 -2.46 9.37 22.64 0.21 -2.25 16 20 C 0.55 15.03 8.35 86.76 0.72 15.75 16 21 O -0.58 -22.10 18.04 -3.87 -0.07 -22.17 16 22 N -0.70 -9.94 6.41 -469.77 -3.01 -12.95 16 23 C 0.14 0.88 7.76 85.63 0.66 1.54 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.13 4.62 8.14 -2.40 -0.02 4.60 16 26 H 0.12 4.55 8.14 -2.39 -0.02 4.53 16 27 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 28 H 0.20 0.19 8.06 -2.91 -0.02 0.17 16 29 H 0.11 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.44 3.96 8.96 -92.71 -0.83 3.13 16 31 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.14 -0.17 8.14 -2.39 -0.02 -0.19 16 Total: -1.00 -86.21 308.63 2.82 -83.39 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.35 Total: 6.55 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 4.02 Total: -4.36 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -2.72 Total: -67.91 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: 0.31 Total: -54.06 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.16 Total: -8.69 kcal Total: -86.21 2.82 -83.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276422368.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.973 kcal (2) G-P(sol) polarization free energy of solvation -86.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds