Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47125 * 103.27900 * 3 2 1 5 5 C 1.36690 * 119.99725 * 96.25815 * 4 3 2 6 6 H 1.07996 * 119.99840 * 173.79324 * 5 4 3 7 7 C 1.39152 * 119.99876 * 353.79955 * 5 4 3 8 8 N 1.31293 * 120.00434 * 328.65122 * 7 5 4 9 9 Si 1.86804 * 119.99985 * 148.65440 * 7 5 4 10 10 H 1.48506 * 109.47123 * 94.99192 * 9 7 5 11 11 H 1.48495 * 109.47460 * 214.99385 * 9 7 5 12 12 H 1.48493 * 109.47181 * 334.99702 * 9 7 5 13 13 C 1.34771 * 120.00380 * 276.26031 * 4 3 2 14 14 O 1.21681 * 120.00096 * 185.05778 * 13 4 3 15 15 C 1.46992 * 119.99676 * 5.06197 * 13 4 3 16 16 C 1.36799 * 125.16183 * 186.27625 * 15 13 4 17 17 C 1.36681 * 114.73825 * 179.97438 * 16 15 13 18 18 C 1.36774 * 114.74393 * 359.97438 * 17 16 15 19 19 C 1.46914 * 125.15667 * 180.02562 * 18 17 16 20 20 O 1.21570 * 120.00081 * 359.97438 * 19 18 17 21 21 O 1.34842 * 119.99977 * 179.97438 * 19 18 17 22 22 C 1.45199 * 117.00159 * 179.97438 * 21 19 18 23 23 S 1.75831 * 109.68144 * 0.02562 * 18 17 16 24 24 H 4.40643 * 5.51346 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.46965 * 343.28077 * 3 2 1 26 26 H 1.09003 * 109.46892 * 223.27915 * 3 2 1 27 27 H 0.97003 * 120.00649 * 180.02562 * 8 7 5 28 28 H 1.08000 * 122.62859 * 0.24297 * 16 15 13 29 29 H 1.07993 * 122.62615 * 180.02562 * 17 16 15 30 30 H 1.09006 * 109.47107 * 59.99697 * 22 21 19 31 31 H 1.09001 * 109.47432 * 180.02562 * 22 21 19 32 32 H 1.08998 * 109.47295 * 300.00116 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1343 0.3181 -1.3443 5 6 3.4832 1.6017 -1.6592 6 1 3.9365 1.8190 -2.6150 7 6 3.2543 2.6283 -0.7482 8 7 2.2319 2.5617 0.0729 9 14 4.4016 4.1015 -0.6934 10 1 3.8426 5.1956 -1.5276 11 1 4.5398 4.5695 0.7091 12 1 5.7345 3.7105 -1.2184 13 6 3.2394 -0.6553 -2.2705 14 8 3.7305 -0.4111 -3.3566 15 6 2.7605 -2.0118 -1.9685 16 6 2.9235 -3.1030 -2.7772 17 6 2.3933 -4.2632 -2.2861 18 6 1.7868 -4.1440 -1.0661 19 6 1.1445 -5.2413 -0.3299 20 8 1.1253 -6.3611 -0.8026 21 8 0.5764 -5.0062 0.8702 22 6 -0.0402 -6.1371 1.5405 23 16 1.8923 -2.4785 -0.5124 24 1 -1.0500 0.0002 0.0002 25 1 3.0098 -0.9834 0.2956 26 1 3.0090 0.7490 0.7045 27 1 2.0721 3.2776 0.7077 28 1 3.4350 -3.0527 -3.7271 29 1 2.4497 -5.2006 -2.8194 30 1 0.7101 -6.9078 1.7175 31 1 -0.4586 -5.8111 2.4928 32 1 -0.8354 -6.5413 0.9141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281878721.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = -20.206245 kcal Electronic energy + Delta-G solvation = -20604.853680 eV Core-core repulsion = 17238.763620 eV Total energy + Delta-G solvation = -3366.090060 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.39552 -40.73505 -38.54967 -37.45197 -36.98888 -34.42863 -33.25826 -31.44223 -29.06548 -28.43403 -27.32827 -25.78140 -23.07073 -22.34674 -20.07148 -19.96012 -19.39313 -18.59147 -18.35380 -17.70821 -17.43704 -16.72154 -16.54827 -16.16594 -15.90401 -15.31358 -14.80657 -14.64325 -14.45511 -14.39558 -14.04086 -13.71376 -13.51579 -13.28189 -13.01134 -12.86709 -12.55724 -12.11766 -11.99664 -11.85010 -11.56181 -11.29248 -11.23278 -10.96161 -10.64088 -10.14008 -9.91300 -9.33383 -8.59597 -5.92879 -1.00539 0.37559 0.79612 0.87985 1.37548 1.45747 1.57906 1.62449 1.75994 1.87964 2.18229 2.26310 2.30890 2.86208 2.99525 3.58450 3.79987 3.88358 4.18399 4.30194 4.32981 4.34843 4.35875 4.70053 4.77093 4.90070 5.02532 5.21491 5.25543 5.26527 5.35371 5.85281 6.25299 6.56006 6.94255 6.95428 7.15315 7.77444 8.41568 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.026134 B = 0.004922 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.130339 B = 5686.804098 C = 6491.134861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.185 4.185 3 C 0.207 3.793 4 N -0.418 5.418 5 C -0.356 4.356 6 H 0.088 0.912 7 C 0.019 3.981 8 N -0.838 5.838 9 Si 0.983 3.017 10 H -0.274 1.274 11 H -0.260 1.260 12 H -0.272 1.272 13 C 0.472 3.528 14 O -0.622 6.622 15 C -0.215 4.215 16 C -0.112 4.112 17 C -0.042 4.042 18 C -0.308 4.308 19 C 0.548 3.452 20 O -0.526 6.526 21 O -0.360 6.360 22 C 0.029 3.971 23 S 0.295 5.705 24 H 0.244 0.756 25 H 0.093 0.907 26 H 0.124 0.876 27 H 0.286 0.714 28 H 0.155 0.845 29 H 0.169 0.831 30 H 0.067 0.933 31 H 0.135 0.865 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 -9.909 7.966 13.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 C 0.083 3.917 4 N -0.132 5.132 5 C -0.484 4.484 6 H 0.106 0.894 7 C -0.189 4.189 8 N -0.472 5.472 9 Si 0.805 3.195 10 H -0.200 1.200 11 H -0.184 1.184 12 H -0.197 1.197 13 C 0.263 3.737 14 O -0.512 6.512 15 C -0.338 4.338 16 C -0.144 4.144 17 C -0.075 4.075 18 C -0.427 4.427 19 C 0.393 3.607 20 O -0.418 6.418 21 O -0.277 6.277 22 C -0.063 4.063 23 S 0.569 5.431 24 H 0.261 0.739 25 H 0.109 0.891 26 H 0.142 0.858 27 H 0.096 0.904 28 H 0.172 0.828 29 H 0.186 0.814 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.044 -9.277 8.877 13.795 hybrid contribution 0.662 -0.057 -1.495 1.636 sum -4.382 -9.334 7.381 12.681 Atomic orbital electron populations 1.25331 0.96286 1.01411 0.97918 1.22857 0.94580 0.99191 1.02251 1.18815 0.85989 1.00755 0.86163 1.43885 1.52282 1.07677 1.09386 1.19705 1.40670 0.83013 1.05013 0.89433 1.26039 0.96284 1.01307 0.95312 1.70177 1.21585 1.35008 1.20405 0.85115 0.78791 0.76971 0.78630 1.19975 1.18375 1.19654 1.17223 0.87295 0.84230 0.84907 1.90596 1.52594 1.82912 1.25085 1.25307 1.08029 0.98183 1.02234 1.20450 1.02382 0.89903 1.01703 1.20488 0.94487 0.99617 0.92943 1.24511 1.14580 1.00855 1.02727 1.19754 0.75007 0.86281 0.79629 1.90819 1.57772 1.24347 1.68878 1.86590 1.67196 1.42361 1.31513 1.23657 0.97706 0.87077 0.97902 1.85050 1.47909 0.95158 1.15010 0.73936 0.89067 0.85846 0.90365 0.82778 0.81398 0.91384 0.84649 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.67 18.99 74.32 1.41 -5.25 16 2 C -0.18 -7.42 9.09 31.12 0.28 -7.14 16 3 C 0.21 8.76 4.74 84.57 0.40 9.16 16 4 N -0.42 -21.06 2.60 -649.68 -1.69 -22.75 16 5 C -0.36 -19.15 9.39 84.16 0.79 -18.36 16 6 H 0.09 5.11 7.33 -2.91 -0.02 5.09 16 7 C 0.02 0.91 4.75 84.99 0.40 1.32 16 8 N -0.84 -39.29 9.87 21.70 0.21 -39.07 16 9 Si 0.98 38.10 29.65 68.60 2.03 40.14 16 10 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 11 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 12 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 13 C 0.47 24.03 7.54 86.54 0.65 24.69 16 14 O -0.62 -36.05 16.42 -4.29 -0.07 -36.12 16 15 C -0.21 -8.84 6.20 24.23 0.15 -8.69 16 16 C -0.11 -4.01 9.89 21.57 0.21 -3.80 16 17 C -0.04 -1.31 9.88 21.56 0.21 -1.09 16 18 C -0.31 -9.78 6.46 24.20 0.16 -9.62 16 19 C 0.55 16.50 7.94 70.09 0.56 17.06 16 20 O -0.53 -17.27 16.61 19.61 0.33 -16.94 16 21 O -0.36 -9.21 10.41 -57.55 -0.60 -9.81 16 22 C 0.03 0.49 10.57 113.37 1.20 1.68 16 23 S 0.30 9.93 15.72 -56.49 -0.89 9.05 16 24 H 0.24 6.21 7.80 -4.42 -0.03 6.17 16 25 H 0.09 3.41 5.01 -18.80 -0.09 3.31 16 26 H 0.12 5.40 5.89 -2.39 -0.01 5.39 16 27 H 0.29 12.29 8.31 -92.71 -0.77 11.52 16 28 H 0.15 5.38 8.04 -2.91 -0.02 5.36 16 29 H 0.17 4.39 8.04 -2.91 -0.02 4.37 16 30 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -66.36 302.86 6.84 -59.52 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 1.08 Total: 16.05 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 6.43 Total: -0.05 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -1.47 Total: -61.82 kcal Atomic # 8 Polarization: -62.53 SS G_CDS: -0.34 Total: -62.87 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.14 kcal Atomic # 16 Polarization: 9.93 SS G_CDS: -0.89 Total: 9.05 kcal Total: -66.36 6.84 -59.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281878721.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.311 kcal (2) G-P(sol) polarization free energy of solvation -66.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds