Wall clock time and date at job start Tue Mar 31 2020 06:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99755 * 2 1 4 4 C 1.50703 * 109.47289 * 270.00096 * 3 2 1 5 5 N 1.30923 * 126.39792 * 89.71648 * 4 3 2 6 6 C 1.35394 * 105.57229 * 179.86420 * 5 4 3 7 7 C 1.47733 * 126.44927 * 180.14698 * 6 5 4 8 8 C 1.34855 * 125.27610 * 179.97438 * 7 6 5 9 9 C 1.37816 * 114.72804 * 179.79176 * 8 7 6 10 10 C 1.33720 * 115.07139 * 0.50385 * 9 8 7 11 11 S 1.75864 * 109.74369 * 359.72837 * 10 9 8 12 12 N 1.31041 * 107.10175 * 0.39934 * 6 5 4 13 13 O 1.21283 * 110.04113 * 359.74731 * 12 6 5 14 14 C 1.34774 * 120.00377 * 180.02562 * 2 1 3 15 15 O 1.21695 * 120.00192 * 179.97438 * 14 2 1 16 16 C 1.46376 * 119.99970 * 0.02562 * 14 2 1 17 17 H 1.08001 * 119.99723 * 359.97438 * 16 14 2 18 18 C 1.40047 * 120.00058 * 179.97438 * 16 14 2 19 19 N 1.30674 * 120.00013 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00110 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47216 * 89.99793 * 20 18 16 22 22 H 1.48500 * 109.47389 * 209.99941 * 20 18 16 23 23 H 1.48501 * 109.47057 * 329.99921 * 20 18 16 24 24 H 1.08999 * 109.46923 * 90.00257 * 1 2 3 25 25 H 1.08997 * 109.46694 * 209.99389 * 1 2 3 26 26 H 1.08995 * 109.47258 * 329.99665 * 1 2 3 27 27 H 1.09001 * 109.47060 * 30.00546 * 3 2 1 28 28 H 1.09004 * 109.47073 * 150.00035 * 3 2 1 29 29 H 1.08003 * 122.63260 * 359.97438 * 8 7 6 30 30 H 1.08004 * 122.46718 * 180.22849 * 9 8 7 31 31 H 1.07997 * 125.13002 * 179.72468 * 10 9 8 32 32 H 0.96999 * 119.99927 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 7 1.6630 2.4508 -2.1550 6 6 2.2933 2.5800 -3.3463 7 6 1.8089 3.3384 -4.5179 8 6 2.4576 3.4518 -5.6947 9 6 1.8040 4.2092 -6.6426 10 6 0.6344 4.7239 -6.2487 11 16 0.3002 4.2397 -4.5914 12 7 3.4113 1.9012 -3.2663 13 8 3.5124 1.3946 -2.1689 14 6 2.1389 -1.1671 -0.0005 15 8 3.3559 -1.1671 -0.0010 16 6 1.4071 -2.4348 -0.0017 17 1 0.3271 -2.4348 -0.0017 18 6 2.1074 -3.6476 -0.0027 19 7 3.4142 -3.6476 -0.0032 20 14 1.1735 -5.2654 -0.0035 21 1 0.9255 -5.6932 -1.4037 22 1 1.9764 -6.3008 0.6955 23 1 -0.1238 -5.0884 0.6972 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3632 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1385 0.5138 29 1 3.4127 2.9832 -5.8808 30 1 2.2090 4.3786 -7.6294 31 1 -0.0082 5.3434 -6.8567 32 1 3.8992 -4.4876 -0.0036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285902348.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:47 Heat of formation + Delta-G solvation = 76.814785 kcal Electronic energy + Delta-G solvation = -20311.221120 eV Core-core repulsion = 16981.630959 eV Total energy + Delta-G solvation = -3329.590162 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.13219 -38.02154 -37.92487 -35.51820 -34.31838 -32.56521 -32.40618 -29.62526 -28.23691 -26.11481 -25.19488 -24.78625 -23.31081 -21.97808 -19.71807 -18.94281 -18.22911 -17.67530 -16.63691 -16.39721 -15.75536 -15.70794 -14.91488 -14.64423 -14.24413 -13.79688 -13.46017 -13.05273 -12.88531 -12.56861 -12.45505 -12.21496 -11.70506 -11.60517 -11.53294 -11.43930 -11.21829 -11.03873 -11.01199 -10.75422 -10.35429 -10.29160 -10.08464 -8.95212 -8.67102 -8.63660 -7.77465 -7.64745 -6.30781 -4.77367 0.43054 1.31988 1.56000 1.80399 2.26364 2.94189 3.08777 3.16406 3.19207 3.22792 3.63453 4.00333 4.33186 4.40953 4.48567 4.83332 5.06491 5.32762 5.40510 5.51507 5.61075 5.75391 5.85393 5.91717 5.99472 6.06706 6.21001 6.26851 6.32765 6.47128 7.30067 7.34940 7.89292 8.15750 8.44278 8.90676 9.17083 10.40203 10.60925 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024246 B = 0.003687 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.571556 B = 7593.306376 C = 7648.327686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.637 5.637 3 C 0.210 3.790 4 C 0.199 3.801 5 N -0.485 5.485 6 C 0.221 3.779 7 C -0.115 4.115 8 C -0.101 4.101 9 C -0.136 4.136 10 C -0.218 4.218 11 S 0.181 5.819 12 N -0.374 5.374 13 O 0.101 5.899 14 C 0.549 3.451 15 O -0.565 6.565 16 C -0.538 4.538 17 H 0.075 0.925 18 C 0.086 3.914 19 N -0.761 5.761 20 Si 0.909 3.091 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.263 1.263 24 H 0.033 0.967 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.169 0.831 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.613 14.129 -7.267 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.377 5.377 3 C 0.082 3.918 4 C -0.023 4.023 5 N -0.220 5.220 6 C -0.050 4.050 7 C -0.234 4.234 8 C -0.136 4.136 9 C -0.167 4.167 10 C -0.356 4.356 11 S 0.446 5.554 12 N -0.080 5.080 13 O 0.040 5.960 14 C 0.357 3.643 15 O -0.447 6.447 16 C -0.574 4.574 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.390 5.390 20 Si 0.733 3.267 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.187 1.187 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.187 0.813 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.747 14.428 -6.952 17.379 hybrid contribution 0.606 -1.146 -1.111 1.707 sum -6.141 13.282 -8.063 16.708 Atomic orbital electron populations 1.21508 0.80939 1.01722 1.00168 1.48294 1.05907 1.03900 1.79554 1.19702 1.01151 0.88925 0.82064 1.30147 0.82056 0.90540 0.99593 1.72024 1.28446 1.19836 1.01702 1.22682 0.90029 0.99352 0.92945 1.21304 1.01036 1.06641 0.94423 1.20359 1.01704 1.00166 0.91354 1.20010 0.95422 1.00138 1.01082 1.26002 1.02126 1.07671 0.99762 1.84396 1.17632 1.44619 1.08783 1.74997 1.19863 1.12308 1.00862 1.85387 1.40466 1.53556 1.16605 1.18455 0.87172 0.82072 0.76646 1.90641 1.13724 1.85672 1.54614 1.20975 0.93800 0.88805 1.53854 0.90694 1.25754 0.94681 1.00444 0.92552 1.70005 1.07083 1.27634 1.34239 0.86340 0.80175 0.81188 0.78948 1.19707 1.20312 1.18742 0.94872 0.90275 0.93297 0.87490 0.86862 0.83561 0.83700 0.81305 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.77 10.19 59.85 0.61 2.38 16 2 N -0.64 -13.65 2.86 -184.63 -0.53 -14.18 16 3 C 0.21 3.77 6.07 -5.19 -0.03 3.74 16 4 C 0.20 3.87 8.07 -12.98 -0.10 3.76 16 5 N -0.49 -9.08 11.58 -9.88 -0.11 -9.20 16 6 C 0.22 4.11 8.02 -156.04 -1.25 2.86 16 7 C -0.11 -1.76 6.44 -36.90 -0.24 -2.00 16 8 C -0.10 -1.33 10.05 -40.94 -0.41 -1.74 16 9 C -0.14 -1.38 10.16 -41.32 -0.42 -1.80 16 10 C -0.22 -2.06 11.23 29.15 0.33 -1.73 16 11 S 0.18 2.19 23.32 -107.50 -2.51 -0.32 16 12 N -0.37 -7.59 12.16 30.98 0.38 -7.21 16 13 O 0.10 2.17 11.29 18.01 0.20 2.37 16 14 C 0.55 14.87 7.61 -12.99 -0.10 14.78 16 15 O -0.57 -17.30 14.60 5.19 0.08 -17.22 16 16 C -0.54 -14.54 8.74 -35.63 -0.31 -14.85 16 17 H 0.07 1.84 6.00 -52.49 -0.31 1.53 16 18 C 0.09 2.33 5.50 -17.37 -0.10 2.24 16 19 N -0.76 -22.13 11.83 55.55 0.66 -21.48 16 20 Si 0.91 19.57 29.56 -169.99 -5.02 14.54 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.41 6.09 -51.93 -0.32 1.09 16 26 H 0.05 0.69 7.89 -51.93 -0.41 0.28 16 27 H 0.11 1.49 7.89 -51.93 -0.41 1.08 16 28 H 0.11 2.08 7.42 -51.93 -0.39 1.70 16 29 H 0.15 1.88 8.06 -52.48 -0.42 1.45 16 30 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 LS Contribution 306.50 15.07 4.62 4.62 Total: -1.00 -34.02 306.50 -6.93 -40.95 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -2.66 Total: -0.50 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -2.02 Total: 7.62 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.39 Total: -52.07 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.28 Total: -14.85 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.51 Total: -0.32 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.02 -6.93 -40.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285902348.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.760 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds