Wall clock time and date at job start Tue Mar 31 2020 06:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99755 * 2 1 4 4 C 1.50703 * 109.47289 * 270.00096 * 3 2 1 5 5 N 1.30923 * 126.39792 * 89.71648 * 4 3 2 6 6 C 1.35394 * 105.57229 * 179.86420 * 5 4 3 7 7 C 1.47733 * 126.44927 * 180.14698 * 6 5 4 8 8 C 1.34855 * 125.27610 * 179.97438 * 7 6 5 9 9 C 1.37816 * 114.72804 * 179.79176 * 8 7 6 10 10 C 1.33720 * 115.07139 * 0.50385 * 9 8 7 11 11 S 1.75864 * 109.74369 * 359.72837 * 10 9 8 12 12 N 1.31041 * 107.10175 * 0.39934 * 6 5 4 13 13 O 1.21283 * 110.04113 * 359.74731 * 12 6 5 14 14 C 1.34774 * 120.00377 * 180.02562 * 2 1 3 15 15 O 1.21695 * 120.00192 * 179.97438 * 14 2 1 16 16 C 1.46376 * 119.99970 * 0.02562 * 14 2 1 17 17 H 1.08001 * 119.99723 * 359.97438 * 16 14 2 18 18 C 1.40047 * 120.00058 * 179.97438 * 16 14 2 19 19 N 1.30674 * 120.00013 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00110 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47216 * 89.99793 * 20 18 16 22 22 H 1.48500 * 109.47389 * 209.99941 * 20 18 16 23 23 H 1.48501 * 109.47057 * 329.99921 * 20 18 16 24 24 H 1.08999 * 109.46923 * 90.00257 * 1 2 3 25 25 H 1.08997 * 109.46694 * 209.99389 * 1 2 3 26 26 H 1.08995 * 109.47258 * 329.99665 * 1 2 3 27 27 H 1.09001 * 109.47060 * 30.00546 * 3 2 1 28 28 H 1.09004 * 109.47073 * 150.00035 * 3 2 1 29 29 H 1.08003 * 122.63260 * 359.97438 * 8 7 6 30 30 H 1.08004 * 122.46718 * 180.22849 * 9 8 7 31 31 H 1.07997 * 125.13002 * 179.72468 * 10 9 8 32 32 H 0.96999 * 119.99927 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 7 1.6630 2.4508 -2.1550 6 6 2.2933 2.5800 -3.3463 7 6 1.8089 3.3384 -4.5179 8 6 2.4576 3.4518 -5.6947 9 6 1.8040 4.2092 -6.6426 10 6 0.6344 4.7239 -6.2487 11 16 0.3002 4.2397 -4.5914 12 7 3.4113 1.9012 -3.2663 13 8 3.5124 1.3946 -2.1689 14 6 2.1389 -1.1671 -0.0005 15 8 3.3559 -1.1671 -0.0010 16 6 1.4071 -2.4348 -0.0017 17 1 0.3271 -2.4348 -0.0017 18 6 2.1074 -3.6476 -0.0027 19 7 3.4142 -3.6476 -0.0032 20 14 1.1735 -5.2654 -0.0035 21 1 0.9255 -5.6932 -1.4037 22 1 1.9764 -6.3008 0.6955 23 1 -0.1238 -5.0884 0.6972 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3632 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1385 0.5138 29 1 3.4127 2.9832 -5.8808 30 1 2.2090 4.3786 -7.6294 31 1 -0.0082 5.3434 -6.8567 32 1 3.8992 -4.4876 -0.0036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285902348.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:47 Heat of formation + Delta-G solvation = 52.214738 kcal Electronic energy + Delta-G solvation = -20312.287858 eV Core-core repulsion = 16981.630959 eV Total energy + Delta-G solvation = -3330.656900 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.61243 -39.81290 -38.96317 -37.00182 -36.09401 -34.63321 -33.89019 -30.73299 -29.82853 -27.98281 -26.60654 -26.12603 -24.70634 -23.27597 -21.48137 -19.98157 -19.45800 -19.20817 -18.50485 -17.74801 -17.66717 -16.82593 -16.40048 -16.32179 -15.95230 -14.88969 -14.58379 -14.49657 -14.39840 -13.89767 -13.69073 -13.50573 -13.33000 -13.19686 -13.10505 -12.91333 -12.85983 -12.74629 -12.34481 -12.19037 -12.02229 -11.81653 -11.53858 -10.95281 -9.88177 -9.70665 -9.56590 -9.43698 -8.32155 -6.88373 -0.64378 0.10682 0.35878 0.92614 1.11935 1.40270 1.40466 1.56444 1.74953 1.81957 2.22481 2.28725 2.47842 2.77005 2.99461 3.56263 3.85143 4.09228 4.12181 4.34621 4.37268 4.50360 4.55808 4.59924 4.73622 4.85805 4.99130 5.02987 5.18874 5.33762 5.35806 5.61272 6.03395 6.20950 6.84930 6.94236 7.25245 8.38007 8.62266 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024246 B = 0.003687 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.571556 B = 7593.306376 C = 7648.327686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.639 5.639 3 C 0.210 3.790 4 C 0.195 3.805 5 N -0.483 5.483 6 C 0.231 3.769 7 C -0.174 4.174 8 C -0.088 4.088 9 C -0.147 4.147 10 C -0.182 4.182 11 S 0.182 5.818 12 N -0.401 5.401 13 O 0.062 5.938 14 C 0.536 3.464 15 O -0.615 6.615 16 C -0.564 4.564 17 H 0.096 0.904 18 C 0.029 3.971 19 N -0.816 5.816 20 Si 0.993 3.007 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.244 1.244 24 H 0.029 0.971 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.156 0.844 28 H 0.102 0.898 29 H 0.140 0.860 30 H 0.179 0.821 31 H 0.212 0.788 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.552 15.373 -8.618 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.377 5.377 3 C 0.083 3.917 4 C -0.027 4.027 5 N -0.218 5.218 6 C -0.040 4.040 7 C -0.293 4.293 8 C -0.124 4.124 9 C -0.176 4.176 10 C -0.319 4.319 11 S 0.447 5.553 12 N -0.114 5.114 13 O 0.008 5.992 14 C 0.343 3.657 15 O -0.500 6.500 16 C -0.600 4.600 17 H 0.114 0.886 18 C -0.186 4.186 19 N -0.446 5.446 20 Si 0.813 3.187 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.166 1.166 24 H 0.047 0.953 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.174 0.826 28 H 0.120 0.880 29 H 0.158 0.842 30 H 0.197 0.803 31 H 0.229 0.771 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.725 15.700 -8.259 20.231 hybrid contribution 1.446 -1.320 -0.838 2.130 sum -8.279 14.381 -9.097 18.924 Atomic orbital electron populations 1.21676 0.78386 1.03743 1.00502 1.48041 1.07531 1.03698 1.78389 1.20007 1.01310 0.88642 0.81705 1.30384 0.81866 0.90572 0.99924 1.72024 1.28142 1.19753 1.01832 1.23299 0.89086 0.97927 0.93649 1.21514 1.03811 1.09636 0.94351 1.20649 1.01299 0.99188 0.91291 1.20283 0.95607 0.99789 1.01882 1.26544 1.01663 1.05676 0.98054 1.84331 1.15902 1.44006 1.11098 1.74973 1.21432 1.14186 1.00800 1.85348 1.41689 1.54787 1.17417 1.18761 0.86808 0.83979 0.76184 1.90598 1.15808 1.87031 1.56592 1.21531 0.95026 0.89511 1.53970 0.88646 1.26971 0.95495 1.04906 0.91264 1.70175 1.09463 1.29042 1.35895 0.85076 0.79136 0.75335 0.79185 1.19270 1.19745 1.16643 0.95259 0.90590 0.88962 0.82619 0.88018 0.84208 0.80337 0.77140 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.34 10.19 127.77 1.30 4.64 16 2 N -0.64 -27.47 2.86 -856.26 -2.45 -29.92 16 3 C 0.21 7.61 6.07 85.63 0.52 8.13 16 4 C 0.20 7.78 8.07 88.35 0.71 8.50 16 5 N -0.48 -18.16 11.58 -302.30 -3.50 -21.66 16 6 C 0.23 8.79 8.02 136.95 1.10 9.89 16 7 C -0.17 -5.26 6.44 24.00 0.15 -5.11 16 8 C -0.09 -2.21 10.05 21.39 0.22 -2.00 16 9 C -0.15 -2.46 10.16 21.14 0.21 -2.25 16 10 C -0.18 -2.66 11.23 66.79 0.75 -1.91 16 11 S 0.18 4.00 23.32 -56.49 -1.32 2.69 16 12 N -0.40 -17.13 12.16 -58.81 -0.72 -17.84 16 13 O 0.06 2.81 11.29 74.53 0.84 3.65 16 14 C 0.54 29.91 7.61 86.36 0.66 30.57 16 15 O -0.61 -39.61 14.60 -4.33 -0.06 -39.67 16 16 C -0.56 -30.91 8.74 24.83 0.22 -30.69 16 17 H 0.10 4.64 6.00 -2.91 -0.02 4.62 16 18 C 0.03 1.61 5.50 85.30 0.47 2.08 16 19 N -0.82 -49.25 11.83 21.84 0.26 -48.99 16 20 Si 0.99 40.21 29.56 68.60 2.03 42.23 16 21 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 23 H -0.24 -8.98 7.11 99.48 0.71 -8.27 16 24 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 2.59 6.09 -2.39 -0.01 2.58 16 26 H 0.09 2.30 7.89 -2.39 -0.02 2.28 16 27 H 0.16 4.00 7.89 -2.39 -0.02 3.99 16 28 H 0.10 3.92 7.42 -2.38 -0.02 3.90 16 29 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 30 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.27 15.08 8.29 -92.71 -0.77 14.32 16 Total: -1.00 -79.04 306.50 2.57 -76.47 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.17 Total: 11.19 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 6.31 Total: 21.85 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -6.40 Total: -118.41 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: 0.78 Total: -36.02 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.23 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.32 Total: 2.69 kcal Total: -79.04 2.57 -76.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285902348.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.689 kcal (2) G-P(sol) polarization free energy of solvation -79.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds