Wall clock time and date at job start Tue Mar 31 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47302 * 299.99600 * 3 2 1 6 6 H 1.48504 * 109.47337 * 59.99836 * 3 2 1 7 7 C 1.38797 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00082 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00121 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00133 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46894 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99691 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99640 * 179.72559 * 11 10 9 14 14 C 1.39955 * 119.99655 * 175.49362 * 13 11 10 15 15 C 1.39142 * 120.10501 * 34.76167 * 14 13 11 16 16 C 1.38221 * 120.14417 * 179.97438 * 15 14 13 17 17 C 1.38030 * 120.40668 * 0.02562 * 16 15 14 18 18 C 1.39618 * 119.94153 * 0.02562 * 17 16 15 19 19 C 1.38148 * 120.09780 * 214.48804 * 14 13 11 20 20 C 1.50782 * 133.38776 * 359.97438 * 19 14 13 21 21 O 1.45398 * 106.40719 * 180.02562 * 20 19 14 22 22 C 1.34351 * 108.99740 * 359.47217 * 21 20 19 23 23 O 1.21473 * 124.89954 * 179.89770 * 22 21 20 24 24 H 0.97002 * 119.99763 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46795 * 60.00492 * 10 9 7 26 26 H 1.09001 * 109.47298 * 299.99831 * 10 9 7 27 27 H 0.96998 * 120.00535 * 355.48963 * 13 11 10 28 28 H 1.08007 * 119.92818 * 0.02562 * 15 14 13 29 29 H 1.07997 * 119.79696 * 180.02562 * 16 15 14 30 30 H 1.08003 * 120.02625 * 179.97438 * 17 16 15 31 31 H 1.08994 * 110.07153 * 299.23651 * 20 19 14 32 32 H 1.09000 * 110.06837 * 60.71549 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7909 -5.5022 -0.0010 13 7 2.8441 -6.3431 -0.0058 14 6 2.3565 -7.6516 0.0888 15 6 1.1442 -7.9893 -0.5046 16 6 0.6622 -9.2814 -0.4121 17 6 1.3767 -10.2465 0.2685 18 6 2.5939 -9.9187 0.8688 19 6 3.0803 -8.6132 0.7670 20 6 4.3972 -8.5923 1.5012 21 8 4.6102 -9.9410 2.0008 22 6 3.5671 -10.7092 1.6448 23 8 3.4490 -11.8883 1.9120 24 1 -0.4850 0.8401 -0.0004 25 1 3.1244 -3.7313 0.8906 26 1 3.1245 -3.7314 -0.8895 27 1 3.7985 -6.1851 -0.0755 28 1 0.5789 -7.2403 -1.0395 29 1 -0.2793 -9.5374 -0.8752 30 1 0.9941 -11.2542 0.3373 31 1 5.2011 -8.3151 0.8194 32 1 4.3514 -7.8876 2.3314 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289919889.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:48 Heat of formation + Delta-G solvation = -75.981688 kcal Electronic energy + Delta-G solvation = -19737.482175 eV Core-core repulsion = 16368.973510 eV Total energy + Delta-G solvation = -3368.508665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.92719 -40.18006 -38.18138 -37.55506 -34.90291 -32.54794 -32.17307 -30.94857 -28.81980 -27.37320 -25.61514 -24.59211 -22.59282 -21.64268 -20.28832 -18.38592 -18.07573 -17.45635 -17.11236 -16.54208 -16.23974 -15.96430 -15.49954 -14.90900 -14.70691 -14.23207 -14.13876 -14.00744 -13.67163 -13.58616 -13.21041 -12.72483 -12.44526 -12.26553 -11.87403 -11.26978 -11.15608 -11.14735 -10.87639 -10.72005 -10.59957 -9.95121 -9.74922 -9.28689 -9.18655 -8.48034 -8.41519 -6.65784 -6.33677 -4.06123 0.28811 0.82517 2.17775 2.61592 2.70347 2.72697 3.14260 3.17199 3.23500 3.34474 3.40508 3.42445 3.78666 4.07996 4.50905 4.64326 4.72331 4.83561 4.91389 5.02347 5.05821 5.14803 5.28495 5.46429 5.62584 5.68274 5.83337 5.91278 6.03657 6.12903 6.28851 6.59449 7.14275 7.17413 7.48628 8.11916 8.23451 9.12232 10.73750 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.036429 B = 0.003034 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.435161 B = 9225.340793 C = 9843.142991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.075 0.925 9 S -0.056 6.056 10 C -0.155 4.155 11 C 0.534 3.466 12 O -0.493 6.493 13 N -0.682 5.682 14 C 0.183 3.817 15 C -0.081 4.081 16 C -0.105 4.105 17 C -0.053 4.053 18 C -0.179 4.179 19 C -0.141 4.141 20 C 0.097 3.903 21 O -0.318 6.318 22 C 0.525 3.475 23 O -0.455 6.455 24 H 0.269 0.731 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.412 0.588 28 H 0.158 0.842 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.116 0.884 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.701 -15.960 -0.872 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.686 4.686 8 H 0.093 0.907 9 S 0.171 5.829 10 C -0.305 4.305 11 C 0.322 3.678 12 O -0.365 6.365 13 N -0.329 5.329 14 C 0.087 3.913 15 C -0.101 4.101 16 C -0.124 4.124 17 C -0.072 4.072 18 C -0.181 4.181 19 C -0.144 4.144 20 C 0.023 3.977 21 O -0.234 6.234 22 C 0.368 3.632 23 O -0.340 6.340 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.248 0.752 28 H 0.175 0.825 29 H 0.159 0.841 30 H 0.154 0.846 31 H 0.133 0.867 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.695 -16.690 -0.605 17.645 hybrid contribution 2.338 1.530 -0.063 2.795 sum 8.033 -15.160 -0.667 17.169 Atomic orbital electron populations 1.70012 1.05983 1.27562 1.46571 1.25002 0.95052 0.99138 0.94341 0.86093 0.79562 0.81708 0.77996 1.19565 1.20496 1.20499 1.22879 0.94950 0.91389 1.59369 0.90716 1.85441 1.04227 0.96474 1.96784 1.23558 1.07213 0.94216 1.05528 1.20629 0.86437 0.86284 0.74440 1.90710 1.15223 1.85071 1.45463 1.43725 1.11267 1.03389 1.74527 1.16839 0.94642 0.83412 0.96370 1.21765 0.94641 0.97124 0.96572 1.21161 1.00241 0.92110 0.98862 1.20851 0.91670 1.00268 0.94446 1.20554 0.98354 0.94504 1.04684 1.20457 0.98540 0.94963 1.00489 1.22315 0.94722 0.81463 0.99181 1.87239 1.42601 1.22502 1.71013 1.20490 0.80169 0.85889 0.76691 1.90883 1.76017 1.12970 1.54144 0.92090 0.88588 0.88582 0.75235 0.82470 0.84051 0.84575 0.86664 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.01 13.22 55.49 0.73 -24.28 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 20.45 29.55 -169.99 -5.02 15.42 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.39 9.50 30.94 0.29 -14.10 16 8 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 9 S -0.06 -1.39 20.57 -107.50 -2.21 -3.60 16 10 C -0.15 -2.68 6.16 36.01 0.22 -2.46 16 11 C 0.53 8.36 7.70 -10.98 -0.08 8.27 16 12 O -0.49 -9.47 13.28 5.55 0.07 -9.40 16 13 N -0.68 -7.44 5.34 -9.96 -0.05 -7.50 16 14 C 0.18 2.05 6.29 -83.85 -0.53 1.52 16 15 C -0.08 -0.95 8.71 -39.25 -0.34 -1.29 16 16 C -0.11 -1.02 10.01 -39.66 -0.40 -1.41 16 17 C -0.05 -0.53 10.10 -39.14 -0.40 -0.92 16 18 C -0.18 -1.97 6.27 -105.09 -0.66 -2.63 16 19 C -0.14 -1.40 6.30 -104.07 -0.66 -2.05 16 20 C 0.10 0.73 7.92 36.05 0.29 1.01 16 21 O -0.32 -3.45 11.13 -39.20 -0.44 -3.88 16 22 C 0.53 6.54 8.58 34.48 0.30 6.84 16 23 O -0.45 -6.92 18.04 -18.92 -0.34 -7.26 16 24 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.10 1.51 8.14 -51.92 -0.42 1.09 16 26 H 0.10 1.50 8.14 -51.92 -0.42 1.07 16 27 H 0.41 2.98 8.82 -40.82 -0.36 2.62 16 28 H 0.16 2.10 6.20 -52.48 -0.33 1.77 16 29 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 31 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 305.30 15.07 4.60 4.60 Total: -1.00 -34.03 305.30 -7.48 -41.51 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -2.77 Total: -0.32 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.06 Total: -5.30 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.68 Total: -31.78 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.70 Total: -20.54 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.21 Total: -3.60 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.03 -7.48 -41.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289919889.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.468 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds