Wall clock time and date at job start Tue Mar 31 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47302 * 299.99600 * 3 2 1 6 6 H 1.48504 * 109.47337 * 59.99836 * 3 2 1 7 7 C 1.38797 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00082 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00121 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00133 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46894 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99691 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99640 * 179.72559 * 11 10 9 14 14 C 1.39955 * 119.99655 * 175.49362 * 13 11 10 15 15 C 1.39142 * 120.10501 * 34.76167 * 14 13 11 16 16 C 1.38221 * 120.14417 * 179.97438 * 15 14 13 17 17 C 1.38030 * 120.40668 * 0.02562 * 16 15 14 18 18 C 1.39618 * 119.94153 * 0.02562 * 17 16 15 19 19 C 1.38148 * 120.09780 * 214.48804 * 14 13 11 20 20 C 1.50782 * 133.38776 * 359.97438 * 19 14 13 21 21 O 1.45398 * 106.40719 * 180.02562 * 20 19 14 22 22 C 1.34351 * 108.99740 * 359.47217 * 21 20 19 23 23 O 1.21473 * 124.89954 * 179.89770 * 22 21 20 24 24 H 0.97002 * 119.99763 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46795 * 60.00492 * 10 9 7 26 26 H 1.09001 * 109.47298 * 299.99831 * 10 9 7 27 27 H 0.96998 * 120.00535 * 355.48963 * 13 11 10 28 28 H 1.08007 * 119.92818 * 0.02562 * 15 14 13 29 29 H 1.07997 * 119.79696 * 180.02562 * 16 15 14 30 30 H 1.08003 * 120.02625 * 179.97438 * 17 16 15 31 31 H 1.08994 * 110.07153 * 299.23651 * 20 19 14 32 32 H 1.09000 * 110.06837 * 60.71549 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7909 -5.5022 -0.0010 13 7 2.8441 -6.3431 -0.0058 14 6 2.3565 -7.6516 0.0888 15 6 1.1442 -7.9893 -0.5046 16 6 0.6622 -9.2814 -0.4121 17 6 1.3767 -10.2465 0.2685 18 6 2.5939 -9.9187 0.8688 19 6 3.0803 -8.6132 0.7670 20 6 4.3972 -8.5923 1.5012 21 8 4.6102 -9.9410 2.0008 22 6 3.5671 -10.7092 1.6448 23 8 3.4490 -11.8883 1.9120 24 1 -0.4850 0.8401 -0.0004 25 1 3.1244 -3.7313 0.8906 26 1 3.1245 -3.7314 -0.8895 27 1 3.7985 -6.1851 -0.0755 28 1 0.5789 -7.2403 -1.0395 29 1 -0.2793 -9.5374 -0.8752 30 1 0.9941 -11.2542 0.3373 31 1 5.2011 -8.3151 0.8194 32 1 4.3514 -7.8876 2.3314 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289919889.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:48 Heat of formation + Delta-G solvation = -98.555579 kcal Electronic energy + Delta-G solvation = -19738.461053 eV Core-core repulsion = 16368.973510 eV Total energy + Delta-G solvation = -3369.487542 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.78090 -41.27014 -39.19647 -38.48142 -35.95957 -34.57512 -32.98686 -32.07442 -29.92901 -28.16601 -27.63344 -25.49419 -23.43872 -22.68106 -21.28857 -19.93393 -19.11049 -18.61205 -17.95529 -17.71438 -17.16360 -16.86906 -16.84460 -16.65909 -15.98268 -15.59183 -15.06851 -14.94261 -14.77011 -14.53726 -14.41923 -14.10607 -13.62150 -13.27135 -13.12508 -12.91636 -12.67654 -12.58325 -12.04848 -11.73320 -11.68136 -11.60314 -11.15163 -10.98685 -10.27119 -10.12958 -9.37265 -8.65343 -8.34567 -6.11680 -0.57671 -0.00738 1.21656 1.23635 1.42534 1.45192 1.53051 1.57790 1.94290 2.03750 2.27160 2.52415 2.59669 3.00766 3.01187 3.27232 3.72434 3.78910 4.04553 4.15202 4.24076 4.28357 4.30526 4.37993 4.52376 4.54198 4.86516 5.01413 5.18767 5.26803 5.44197 5.46338 5.70862 6.20852 6.21910 6.25119 7.00601 7.08203 8.74501 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.036429 B = 0.003034 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.435161 B = 9225.340793 C = 9843.142991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.086 0.914 9 S -0.147 6.147 10 C -0.130 4.130 11 C 0.540 3.460 12 O -0.536 6.536 13 N -0.656 5.656 14 C 0.167 3.833 15 C -0.095 4.095 16 C -0.102 4.102 17 C -0.048 4.048 18 C -0.196 4.196 19 C -0.123 4.123 20 C 0.093 3.907 21 O -0.325 6.325 22 C 0.527 3.473 23 O -0.493 6.493 24 H 0.270 0.730 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.432 0.568 28 H 0.138 0.862 29 H 0.165 0.835 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.143 -15.988 -0.861 18.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.080 5.920 10 C -0.281 4.281 11 C 0.327 3.673 12 O -0.411 6.411 13 N -0.304 5.304 14 C 0.072 3.928 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.067 4.067 18 C -0.198 4.198 19 C -0.126 4.126 20 C 0.020 3.980 21 O -0.240 6.240 22 C 0.371 3.629 23 O -0.382 6.382 24 H 0.079 0.921 25 H 0.137 0.863 26 H 0.138 0.862 27 H 0.272 0.728 28 H 0.156 0.844 29 H 0.182 0.818 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.201 -16.733 -0.598 18.644 hybrid contribution 1.623 1.405 -0.075 2.147 sum 9.823 -15.328 -0.673 18.218 Atomic orbital electron populations 1.70174 1.07936 1.28510 1.48145 1.26080 0.95907 1.03260 0.93859 0.84942 0.78781 0.76585 0.77889 1.17835 1.20193 1.20254 1.23241 0.95457 0.91897 1.58564 0.89596 1.85606 1.10085 0.99189 1.97086 1.23372 1.03958 0.93040 1.07731 1.20274 0.86143 0.86526 0.74327 1.90714 1.17094 1.85513 1.47757 1.43255 1.11718 1.02350 1.73072 1.16799 0.95015 0.83359 0.97641 1.21780 0.95066 0.97626 0.97014 1.21359 1.00989 0.91157 0.98546 1.21108 0.91183 1.01049 0.93373 1.20622 0.98869 0.94894 1.05460 1.20521 0.99113 0.93824 0.99162 1.22774 0.94499 0.80188 1.00507 1.87222 1.42038 1.23782 1.70913 1.20632 0.80477 0.85576 0.76181 1.90858 1.76931 1.14576 1.55814 0.92063 0.86297 0.86248 0.72792 0.84406 0.81794 0.83002 0.82770 0.84214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.68 13.22 21.65 0.29 -53.40 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 41.50 29.55 68.60 2.03 43.53 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.54 -28.93 9.50 67.95 0.65 -28.28 16 8 H 0.09 4.20 7.80 -2.91 -0.02 4.17 16 9 S -0.15 -7.43 20.57 -56.49 -1.16 -8.59 16 10 C -0.13 -4.28 6.16 71.24 0.44 -3.84 16 11 C 0.54 16.17 7.70 87.66 0.67 16.84 16 12 O -0.54 -20.76 13.28 -3.05 -0.04 -20.80 16 13 N -0.66 -12.60 5.34 -303.81 -1.62 -14.22 16 14 C 0.17 3.39 6.29 38.04 0.24 3.63 16 15 C -0.09 -2.15 8.71 22.48 0.20 -1.95 16 16 C -0.10 -1.84 10.01 22.22 0.22 -1.62 16 17 C -0.05 -0.88 10.10 22.55 0.23 -0.65 16 18 C -0.20 -3.98 6.27 -20.17 -0.13 -4.10 16 19 C -0.12 -2.11 6.30 -19.51 -0.12 -2.23 16 20 C 0.09 1.05 7.92 71.26 0.56 1.61 16 21 O -0.32 -6.27 11.13 -52.95 -0.59 -6.86 16 22 C 0.53 12.45 8.58 70.25 0.60 13.05 16 23 O -0.49 -14.86 18.04 19.61 0.35 -14.50 16 24 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.12 3.40 8.14 -2.40 -0.02 3.38 16 26 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 27 H 0.43 4.54 8.82 -92.71 -0.82 3.72 16 28 H 0.14 3.74 6.20 -2.91 -0.02 3.72 16 29 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 30 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -76.79 305.30 3.65 -73.14 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.37 Total: 8.03 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 4.03 Total: -6.32 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -1.33 Total: -67.62 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.28 Total: -42.16 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: -7.43 SS G_CDS: -1.16 Total: -8.59 kcal Total: -76.79 3.65 -73.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289919889.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.420 kcal (2) G-P(sol) polarization free energy of solvation -76.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds