Wall clock time and date at job start Tue Mar 31 2020 07:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39850 * 120.08274 * 260.27818 * 3 2 1 5 5 C 1.37604 * 119.93191 * 179.74890 * 4 3 2 6 6 C 1.39236 * 120.11061 * 0.54743 * 5 4 3 7 7 N 1.39186 * 119.91034 * 179.72426 * 6 5 4 8 8 N 1.40100 * 120.00295 * 359.97438 * 7 6 5 9 9 C 1.34776 * 119.99603 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00512 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.99611 * 180.02562 * 9 8 7 12 12 C 1.53000 * 109.47088 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47273 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99991 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00027 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00067 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99645 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47375 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47010 * 120.00202 * 17 15 13 20 20 H 1.48505 * 109.46943 * 239.99502 * 17 15 13 21 21 C 1.39092 * 120.17106 * 359.70676 * 6 5 4 22 22 C 1.37832 * 120.06391 * 0.02562 * 21 6 5 23 23 Cl 1.73594 * 120.05530 * 179.97438 * 22 21 6 24 24 H 1.08001 * 120.03108 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.94631 * 180.25483 * 5 4 3 26 26 H 0.97006 * 119.99675 * 179.97438 * 7 6 5 27 27 H 0.96998 * 119.99727 * 0.02562 * 8 7 6 28 28 H 1.09001 * 109.46921 * 300.00256 * 11 9 8 29 29 H 1.08995 * 109.47390 * 60.00024 * 11 9 8 30 30 H 1.09001 * 109.47044 * 299.99685 * 12 11 9 31 31 H 1.08995 * 109.47390 * 59.99529 * 12 11 9 32 32 H 0.97001 * 119.99653 * 180.02562 * 16 15 13 33 33 H 1.08001 * 119.96955 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.2053 1.1927 5 6 4.6449 0.2002 1.1901 6 6 5.3404 0.0029 0.0001 7 7 6.7322 0.0042 0.0012 8 7 7.4316 0.2044 1.1985 9 6 8.7794 0.2051 1.1996 10 8 9.3867 0.0330 0.1640 11 6 9.5317 0.4198 2.4876 12 6 11.0362 0.3754 2.2130 13 6 11.7885 0.5894 3.5011 14 1 11.2477 0.7423 4.4233 15 6 13.1673 0.5901 3.5022 16 7 13.8259 0.4034 2.3793 17 14 14.0998 0.8562 5.0988 18 1 13.1338 1.0404 6.2114 19 1 14.9539 -0.3266 5.3762 20 1 14.9532 2.0655 4.9780 21 6 4.6478 -0.1958 -1.1897 22 6 3.2695 -0.1975 -1.1943 23 17 2.4053 -0.4449 -2.6794 24 1 2.7307 0.3628 2.1158 25 1 5.1864 0.3541 2.1117 26 1 7.2180 -0.1335 -0.8271 27 1 6.9458 0.3416 2.0268 28 1 9.2674 1.3914 2.9051 29 1 9.2683 -0.3643 3.1974 30 1 11.3008 -0.5961 1.7953 31 1 11.2994 1.1597 1.5034 32 1 14.7959 0.4035 2.3802 33 1 5.1905 -0.3489 -2.1108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291837666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:14 Heat of formation + Delta-G solvation = 39.281810 kcal Electronic energy + Delta-G solvation = -19029.285171 eV Core-core repulsion = 15696.023751 eV Total energy + Delta-G solvation = -3333.261420 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44504 -39.33875 -37.26143 -36.79817 -35.72212 -33.65442 -32.62668 -31.36591 -31.03793 -29.02014 -25.82264 -23.85347 -23.39551 -21.85632 -20.33569 -19.40619 -18.41204 -17.74278 -16.72446 -15.83045 -15.70274 -15.43362 -14.94932 -14.69583 -14.55325 -14.45098 -14.06245 -13.65081 -13.61684 -13.00866 -12.89831 -12.65704 -12.38873 -12.32059 -11.84248 -11.43096 -11.35155 -11.35016 -11.03872 -10.68974 -10.16151 -9.92659 -9.66913 -9.57122 -9.35350 -9.22520 -8.44473 -7.63845 -6.07907 -4.13186 0.40706 0.73314 1.43894 1.86785 2.44963 2.56947 2.87578 3.25691 3.33489 3.35907 3.43984 3.61032 3.95936 4.29521 4.37905 4.50324 4.80205 4.91273 5.05005 5.23134 5.27844 5.48598 5.62504 5.74958 5.94581 5.95228 5.97410 6.45759 6.70358 7.14159 7.27629 7.47495 7.60434 7.66939 7.91757 8.21685 8.41383 8.94597 9.51481 11.02933 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.042134 B = 0.002344 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.381491 B =11940.118998 C =12584.053849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.262 3.738 3 C -0.098 4.098 4 C 0.003 3.997 5 C -0.205 4.205 6 C 0.268 3.732 7 N -0.522 5.522 8 N -0.540 5.540 9 C 0.512 3.488 10 O -0.527 6.527 11 C -0.118 4.118 12 C 0.037 3.963 13 C -0.530 4.530 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.888 5.888 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.192 4.192 22 C 0.067 3.933 23 Cl -0.051 7.051 24 H 0.143 0.857 25 H 0.136 0.864 26 H 0.438 0.562 27 H 0.421 0.579 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.262 0.738 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.597 -0.679 -4.053 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.053 4.053 3 C -0.105 4.105 4 C -0.019 4.019 5 C -0.229 4.229 6 C 0.157 3.843 7 N -0.241 5.241 8 N -0.291 5.291 9 C 0.301 3.699 10 O -0.400 6.400 11 C -0.160 4.160 12 C -0.001 4.001 13 C -0.568 4.568 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.526 5.526 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.217 4.217 22 C 0.036 3.964 23 Cl -0.022 7.022 24 H 0.161 0.839 25 H 0.154 0.846 26 H 0.282 0.718 27 H 0.263 0.737 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.582 -0.810 -4.850 22.135 hybrid contribution 0.937 0.114 0.686 1.167 sum -20.645 -0.696 -4.163 21.072 Atomic orbital electron populations 1.81227 1.11891 1.09731 1.06948 1.25364 0.92317 0.93562 0.94046 1.15525 0.84699 1.16683 0.93579 1.20818 0.93099 0.91852 0.96102 1.20458 0.93995 1.11356 0.97050 1.17753 0.81762 0.90955 0.93870 1.43519 1.00549 1.76312 1.03684 1.45679 1.04985 1.76923 1.01520 1.22154 0.78813 0.75201 0.93743 1.90717 1.67067 1.47909 1.34259 1.21921 0.99881 1.02991 0.91171 1.18949 0.84993 0.98876 0.97269 1.21193 0.91401 1.50267 0.93947 0.92354 1.25026 0.97873 0.95146 0.96304 1.69996 1.07620 1.49192 1.25840 0.86509 0.79939 0.77832 0.83519 1.19687 1.20967 1.20961 1.20122 0.91594 1.12026 0.97966 1.20459 0.91532 0.97919 0.86484 1.98415 1.76430 1.94587 1.32771 0.83880 0.84640 0.71774 0.73674 0.89396 0.89391 0.95595 0.95595 0.92862 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.19 18.54 41.83 0.78 -4.42 16 2 C 0.26 2.65 14.38 -22.47 -0.32 2.33 16 3 C -0.10 -0.80 5.75 -106.74 -0.61 -1.41 16 4 C 0.00 0.02 9.75 -39.21 -0.38 -0.36 16 5 C -0.20 -1.33 9.45 -39.44 -0.37 -1.70 16 6 C 0.27 2.13 6.72 -83.83 -0.56 1.56 16 7 N -0.52 -5.13 6.43 32.41 0.21 -4.92 16 8 N -0.54 -5.86 6.21 31.22 0.19 -5.67 16 9 C 0.51 8.10 7.95 -10.98 -0.09 8.01 16 10 O -0.53 -10.64 15.82 5.56 0.09 -10.55 16 11 C -0.12 -2.01 5.64 -27.88 -0.16 -2.16 16 12 C 0.04 0.90 4.26 -27.88 -0.12 0.78 16 13 C -0.53 -13.95 9.11 -34.44 -0.31 -14.27 16 14 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 17 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 C -0.19 -1.45 9.65 -39.41 -0.38 -1.83 16 22 C 0.07 0.55 6.34 -39.10 -0.25 0.30 16 23 Cl -0.05 -0.45 28.02 -51.86 -1.45 -1.90 16 24 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 25 H 0.14 0.63 6.17 -52.49 -0.32 0.31 16 26 H 0.44 4.52 8.00 -182.59 -1.46 3.06 16 27 H 0.42 3.16 6.57 -182.60 -1.20 1.96 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -32.93 319.01 -8.38 -41.31 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -5.06 Total: -1.66 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -3.66 Total: -7.23 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 1.91 Total: -40.37 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.45 Total: -1.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.93 -8.38 -41.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291837666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.592 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds