Wall clock time and date at job start Tue Mar 31 2020 07:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39850 * 120.08274 * 260.27818 * 3 2 1 5 5 C 1.37604 * 119.93191 * 179.74890 * 4 3 2 6 6 C 1.39236 * 120.11061 * 0.54743 * 5 4 3 7 7 N 1.39186 * 119.91034 * 179.72426 * 6 5 4 8 8 N 1.40100 * 120.00295 * 359.97438 * 7 6 5 9 9 C 1.34776 * 119.99603 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00512 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.99611 * 180.02562 * 9 8 7 12 12 C 1.53000 * 109.47088 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47273 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99991 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00027 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00067 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99645 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47375 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47010 * 120.00202 * 17 15 13 20 20 H 1.48505 * 109.46943 * 239.99502 * 17 15 13 21 21 C 1.39092 * 120.17106 * 359.70676 * 6 5 4 22 22 C 1.37832 * 120.06391 * 0.02562 * 21 6 5 23 23 Cl 1.73594 * 120.05530 * 179.97438 * 22 21 6 24 24 H 1.08001 * 120.03108 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.94631 * 180.25483 * 5 4 3 26 26 H 0.97006 * 119.99675 * 179.97438 * 7 6 5 27 27 H 0.96998 * 119.99727 * 0.02562 * 8 7 6 28 28 H 1.09001 * 109.46921 * 300.00256 * 11 9 8 29 29 H 1.08995 * 109.47390 * 60.00024 * 11 9 8 30 30 H 1.09001 * 109.47044 * 299.99685 * 12 11 9 31 31 H 1.08995 * 109.47390 * 59.99529 * 12 11 9 32 32 H 0.97001 * 119.99653 * 180.02562 * 16 15 13 33 33 H 1.08001 * 119.96955 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.2053 1.1927 5 6 4.6449 0.2002 1.1901 6 6 5.3404 0.0029 0.0001 7 7 6.7322 0.0042 0.0012 8 7 7.4316 0.2044 1.1985 9 6 8.7794 0.2051 1.1996 10 8 9.3867 0.0330 0.1640 11 6 9.5317 0.4198 2.4876 12 6 11.0362 0.3754 2.2130 13 6 11.7885 0.5894 3.5011 14 1 11.2477 0.7423 4.4233 15 6 13.1673 0.5901 3.5022 16 7 13.8259 0.4034 2.3793 17 14 14.0998 0.8562 5.0988 18 1 13.1338 1.0404 6.2114 19 1 14.9539 -0.3266 5.3762 20 1 14.9532 2.0655 4.9780 21 6 4.6478 -0.1958 -1.1897 22 6 3.2695 -0.1975 -1.1943 23 17 2.4053 -0.4449 -2.6794 24 1 2.7307 0.3628 2.1158 25 1 5.1864 0.3541 2.1117 26 1 7.2180 -0.1335 -0.8271 27 1 6.9458 0.3416 2.0268 28 1 9.2674 1.3914 2.9051 29 1 9.2683 -0.3643 3.1974 30 1 11.3008 -0.5961 1.7953 31 1 11.2994 1.1597 1.5034 32 1 14.7959 0.4035 2.3802 33 1 5.1905 -0.3489 -2.1108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291837666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:13 Heat of formation + Delta-G solvation = 17.996180 kcal Electronic energy + Delta-G solvation = -19030.208185 eV Core-core repulsion = 15696.023751 eV Total energy + Delta-G solvation = -3334.184434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28332 -40.34198 -38.07735 -37.55552 -36.62363 -35.53658 -33.66969 -32.72943 -31.86832 -29.93806 -27.53094 -24.51939 -24.43269 -23.20528 -21.55150 -20.07502 -19.33425 -18.92772 -18.20504 -17.07070 -16.65229 -16.49643 -16.32970 -15.72281 -15.46313 -15.15576 -15.05730 -14.65777 -14.59685 -14.21013 -14.03964 -13.82920 -13.37945 -13.35133 -13.21333 -12.83255 -12.46115 -12.41799 -12.14901 -12.07922 -11.89111 -11.62632 -11.26289 -10.98403 -10.55460 -10.45928 -9.96895 -8.42481 -8.15331 -6.28062 -0.26166 0.17426 0.68987 1.09239 1.46648 1.47008 1.57556 1.59903 1.66295 1.94540 2.45257 2.77240 2.87897 3.13804 3.19228 3.73379 3.86222 4.02704 4.20434 4.28193 4.50623 4.60214 4.68997 4.86391 5.04790 5.09024 5.18766 5.35438 5.55495 5.67473 5.72878 5.89368 6.18779 6.25709 6.49950 6.59238 6.91867 7.31991 7.42525 8.97281 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.042134 B = 0.002344 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.381491 B =11940.118998 C =12584.053849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.280 3.720 3 C -0.104 4.104 4 C 0.015 3.985 5 C -0.197 4.197 6 C 0.262 3.738 7 N -0.530 5.530 8 N -0.514 5.514 9 C 0.516 3.484 10 O -0.582 6.582 11 C -0.108 4.108 12 C 0.039 3.961 13 C -0.537 4.537 14 H 0.081 0.919 15 C -0.008 4.008 16 N -0.938 5.938 17 Si 0.969 3.031 18 H -0.250 1.250 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.188 4.188 22 C 0.059 3.941 23 Cl -0.061 7.061 24 H 0.172 0.828 25 H 0.161 0.839 26 H 0.435 0.565 27 H 0.441 0.559 28 H 0.117 0.883 29 H 0.117 0.883 30 H -0.015 1.015 31 H -0.015 1.015 32 H 0.261 0.739 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.995 -0.260 -1.546 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.033 4.033 3 C -0.111 4.111 4 C -0.007 4.007 5 C -0.220 4.220 6 C 0.152 3.848 7 N -0.250 5.250 8 N -0.264 5.264 9 C 0.304 3.696 10 O -0.459 6.459 11 C -0.148 4.148 12 C 0.001 3.999 13 C -0.575 4.575 14 H 0.099 0.901 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.794 3.206 18 H -0.173 1.173 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.212 4.212 22 C 0.029 3.971 23 Cl -0.031 7.031 24 H 0.189 0.811 25 H 0.178 0.822 26 H 0.278 0.722 27 H 0.287 0.713 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.003 0.997 31 H 0.003 0.997 32 H 0.070 0.930 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -23.090 -0.384 -2.294 23.207 hybrid contribution 1.262 -0.025 -0.142 1.271 sum -21.827 -0.408 -2.436 21.966 Atomic orbital electron populations 1.81247 1.13173 1.11365 1.08322 1.25620 0.92565 0.92357 0.92801 1.15693 0.83734 1.17237 0.94406 1.21096 0.93005 0.90261 0.96296 1.20759 0.94121 1.09804 0.97335 1.17885 0.80819 0.91411 0.94638 1.43543 1.01052 1.77584 1.02864 1.45054 1.03796 1.74680 1.02871 1.21705 0.80261 0.75126 0.92472 1.90707 1.68623 1.50794 1.35767 1.21623 0.94989 1.05737 0.92495 1.18732 0.90496 0.95077 0.95581 1.21754 0.91871 1.48670 0.95246 0.90134 1.26089 0.99437 0.95057 0.99919 1.70171 1.07841 1.51137 1.28681 0.85334 0.78540 0.77332 0.79401 1.17345 1.21045 1.21034 1.20201 0.91326 1.11211 0.98493 1.20504 0.91718 0.98649 0.86262 1.98416 1.76613 1.94688 1.33417 0.81095 0.82164 0.72204 0.71329 0.86517 0.86513 0.99667 0.99660 0.93002 0.82732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.07 18.54 19.00 0.35 -10.72 16 2 C 0.28 5.28 14.38 88.33 1.27 6.55 16 3 C -0.10 -1.45 5.75 -21.23 -0.12 -1.57 16 4 C 0.01 0.13 9.75 22.51 0.22 0.35 16 5 C -0.20 -1.77 9.45 22.36 0.21 -1.56 16 6 C 0.26 3.44 6.72 38.42 0.26 3.70 16 7 N -0.53 -9.35 6.43 -51.36 -0.33 -9.68 16 8 N -0.51 -9.77 6.21 -173.53 -1.08 -10.85 16 9 C 0.52 15.79 7.95 87.66 0.70 16.48 16 10 O -0.58 -24.08 15.82 -3.02 -0.05 -24.13 16 11 C -0.11 -3.46 5.64 29.85 0.17 -3.29 16 12 C 0.04 1.95 4.26 29.85 0.13 2.07 16 13 C -0.54 -28.07 9.11 25.60 0.23 -27.84 16 14 H 0.08 3.76 7.74 -2.91 -0.02 3.73 16 15 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 16 N -0.94 -56.90 13.29 21.45 0.28 -56.62 16 17 Si 0.97 41.98 29.54 68.60 2.03 44.00 16 18 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 C -0.19 -2.48 9.65 22.38 0.22 -2.27 16 22 C 0.06 0.87 6.34 22.58 0.14 1.02 16 23 Cl -0.06 -1.01 28.02 -2.72 -0.08 -1.09 16 24 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 25 H 0.16 0.64 6.17 -2.91 -0.02 0.62 16 26 H 0.43 8.62 8.00 -213.31 -1.71 6.91 16 27 H 0.44 4.72 6.57 -213.32 -1.40 3.32 16 28 H 0.12 3.09 8.14 -2.39 -0.02 3.08 16 29 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 30 H -0.02 -0.87 8.10 -2.39 -0.02 -0.89 16 31 H -0.02 -0.86 8.10 -2.39 -0.02 -0.88 16 32 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 33 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -75.32 319.01 3.09 -72.23 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -1.92 Total: 3.17 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 3.88 Total: -6.32 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -0.77 Total: -87.86 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -75.32 3.09 -72.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291837666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.222 kcal (2) G-P(sol) polarization free energy of solvation -75.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds