Wall clock time and date at job start Tue Mar 31 2020 07:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47140 * 2 1 4 4 N 1.32276 * 125.90306 * 269.68733 * 3 2 1 5 5 C 1.33251 * 109.83439 * 180.26598 * 4 3 2 6 6 C 1.40618 * 131.78706 * 180.02562 * 5 4 3 7 7 C 1.36306 * 119.41038 * 180.02562 * 6 5 4 8 8 C 1.40240 * 119.60775 * 359.97438 * 7 6 5 9 9 Cl 1.73597 * 119.95102 * 180.02562 * 8 7 6 10 10 C 1.35379 * 120.09486 * 0.02562 * 8 7 6 11 11 N 1.36015 * 120.61713 * 359.97438 * 10 8 7 12 12 C 1.38300 * 132.38169 * 179.97438 * 11 10 8 13 13 C 1.41663 * 126.79948 * 0.02603 * 12 11 10 14 14 O 1.21820 * 120.00058 * 260.30449 * 13 12 11 15 15 N 1.34780 * 120.00085 * 80.29557 * 13 12 11 16 16 C 1.36916 * 120.00178 * 185.12829 * 15 13 12 17 17 H 1.07992 * 119.99626 * 0.02562 * 16 15 13 18 18 C 1.38954 * 119.99654 * 180.02562 * 16 15 13 19 19 N 1.31426 * 120.00481 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99463 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47246 * 90.00166 * 20 18 16 22 22 H 1.48505 * 109.46564 * 210.00077 * 20 18 16 23 23 H 1.48497 * 109.47045 * 329.99952 * 20 18 16 24 24 H 1.09001 * 109.47282 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47029 * 300.00423 * 1 2 3 26 26 H 1.09000 * 109.47062 * 59.99792 * 1 2 3 27 27 H 1.08998 * 109.46588 * 239.99732 * 2 1 3 28 28 H 1.08996 * 109.46621 * 120.00054 * 2 1 3 29 29 H 1.08002 * 120.29910 * 359.96840 * 6 5 4 30 30 H 1.07998 * 120.19395 * 179.97438 * 7 6 5 31 31 H 1.08003 * 119.69172 * 180.02562 * 10 8 7 32 32 H 0.96999 * 119.99985 * 5.13141 * 15 13 12 33 33 H 0.97003 * 120.00389 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2964 2.1501 -1.0714 5 6 2.7268 3.3560 -0.7026 6 6 3.1294 4.4766 -1.4507 7 6 3.5321 5.6054 -0.8015 8 6 3.5386 5.6332 0.6006 9 17 4.0492 7.0664 1.4367 10 6 3.1474 4.5441 1.3031 11 7 2.7443 3.4143 0.6619 12 6 2.3046 2.1870 1.1234 13 6 2.1602 1.7910 2.4758 14 8 3.0203 1.1109 3.0066 15 7 1.0713 2.1669 3.1755 16 6 0.9804 1.8744 4.5100 17 1 1.7815 1.3429 5.0020 18 6 -0.1425 2.2615 5.2311 19 7 -1.1176 2.9079 4.6322 20 14 -0.2661 1.8631 7.0520 21 1 0.3190 2.9754 7.8430 22 1 -1.6930 1.6878 7.4245 23 1 0.4772 0.6093 7.3359 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.1205 4.4428 -2.5302 30 1 3.8443 6.4731 -1.3635 31 1 3.1546 4.5728 2.3827 32 1 0.3519 2.6445 2.7336 33 1 -1.9013 3.1784 5.1357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291988612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:35 Heat of formation + Delta-G solvation = 37.068615 kcal Electronic energy + Delta-G solvation = -20854.582552 eV Core-core repulsion = 17521.225161 eV Total energy + Delta-G solvation = -3333.357391 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.67955 -38.41797 -37.64717 -36.37542 -34.15068 -33.80221 -32.95833 -31.41320 -29.50792 -28.80712 -25.46988 -24.35966 -23.35520 -22.70056 -20.65690 -19.66163 -18.30300 -17.48518 -17.00523 -16.32508 -15.92755 -15.52512 -14.83327 -14.78953 -14.09745 -13.91731 -13.62605 -13.16906 -13.11358 -13.00764 -12.64451 -12.27708 -12.14035 -11.73869 -11.25585 -11.21575 -11.16852 -11.02387 -10.73326 -10.70094 -10.52229 -10.40298 -9.99815 -9.70498 -8.82289 -8.48089 -8.19463 -7.60727 -6.63003 -4.02818 0.64518 1.10467 1.66767 2.63829 2.81053 3.08792 3.16938 3.22606 3.49530 3.67178 4.03537 4.17485 4.46274 4.61676 4.86095 5.01658 5.11278 5.12735 5.34707 5.56497 5.67278 5.71504 5.85080 5.90973 5.95950 6.08616 6.23224 6.35974 6.46025 6.56386 6.79326 7.10028 7.35509 7.81742 7.98832 8.36453 8.94364 9.27693 9.78780 10.52875 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.006116 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.513663 B = 4576.768796 C = 6222.384133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.109 3.891 4 N -0.483 5.483 5 C 0.211 3.789 6 C -0.063 4.063 7 C -0.100 4.100 8 C -0.068 4.068 9 Cl -0.041 7.041 10 C 0.088 3.912 11 N -0.333 5.333 12 C -0.064 4.064 13 C 0.494 3.506 14 O -0.582 6.582 15 N -0.532 5.532 16 C -0.305 4.305 17 H 0.109 0.891 18 C 0.029 3.971 19 N -0.887 5.887 20 Si 0.934 3.066 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.266 1.266 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.159 0.841 30 H 0.150 0.850 31 H 0.173 0.827 32 H 0.394 0.606 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 5.774 -9.891 12.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.028 4.028 4 N -0.203 5.203 5 C -0.029 4.029 6 C -0.084 4.084 7 C -0.125 4.125 8 C -0.097 4.097 9 Cl -0.012 7.012 10 C -0.037 4.037 11 N -0.006 5.006 12 C -0.179 4.179 13 C 0.279 3.721 14 O -0.467 6.467 15 N -0.166 5.166 16 C -0.434 4.434 17 H 0.126 0.874 18 C -0.175 4.175 19 N -0.526 5.526 20 Si 0.760 3.240 21 H -0.201 1.201 22 H -0.206 1.206 23 H -0.191 1.191 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.176 0.824 30 H 0.168 0.832 31 H 0.190 0.810 32 H 0.228 0.772 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.735 5.233 -10.112 12.331 hybrid contribution -0.401 0.728 1.586 1.790 sum 4.334 5.961 -8.526 11.270 Atomic orbital electron populations 1.21709 0.94045 1.01938 1.02510 1.19989 0.96306 0.88371 1.03628 1.21338 0.98489 0.96779 0.86157 1.70276 1.19904 1.00607 1.29515 1.20892 1.05706 0.96051 0.80288 1.20162 0.98969 0.88749 1.00504 1.20845 1.00942 0.99142 0.91533 1.19955 1.07423 0.89588 0.92783 1.98384 1.89304 1.35547 1.78004 1.21406 0.98274 0.84187 0.99819 1.42650 1.39819 1.09460 1.08638 1.20611 1.14902 0.84907 0.97502 1.15129 0.85721 0.87824 0.83393 1.90718 1.43532 1.42748 1.69672 1.42020 1.17047 1.47994 1.09584 1.19796 1.04819 1.35329 0.83496 0.87365 1.25381 0.94899 0.96135 1.01069 1.69627 1.08050 1.37253 1.37717 0.85799 0.77653 0.79317 0.81259 1.20142 1.20638 1.19059 0.92039 0.91956 0.92608 0.90111 0.89494 0.82358 0.83185 0.81003 0.77189 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 37.16 0.37 -1.86 16 2 C -0.04 -0.75 6.28 -27.88 -0.18 -0.92 16 3 C 0.11 2.12 6.42 -82.24 -0.53 1.59 16 4 N -0.48 -8.95 11.25 -8.49 -0.10 -9.04 16 5 C 0.21 3.61 7.77 -156.03 -1.21 2.40 16 6 C -0.06 -0.80 10.10 -39.38 -0.40 -1.20 16 7 C -0.10 -1.13 9.87 -39.53 -0.39 -1.52 16 8 C -0.07 -0.90 6.28 -39.85 -0.25 -1.15 16 9 Cl -0.04 -0.48 28.95 -51.86 -1.50 -1.98 16 10 C 0.09 1.45 10.58 -16.72 -0.18 1.27 16 11 N -0.33 -6.21 2.96 -60.10 -0.18 -6.39 16 12 C -0.06 -1.36 6.52 -83.48 -0.54 -1.91 16 13 C 0.49 12.04 6.86 -14.95 -0.10 11.94 16 14 O -0.58 -16.10 16.68 5.08 0.08 -16.02 16 15 N -0.53 -13.32 5.27 -13.59 -0.07 -13.39 16 16 C -0.30 -8.12 9.67 -15.02 -0.15 -8.27 16 17 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 18 C 0.03 0.74 5.50 -17.46 -0.10 0.65 16 19 N -0.89 -23.08 13.05 55.50 0.72 -22.35 16 20 Si 0.93 20.00 29.55 -169.99 -5.02 14.98 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.09 1.56 7.94 -51.93 -0.41 1.15 16 29 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.17 2.89 8.06 -52.48 -0.42 2.47 16 32 H 0.39 9.75 7.86 -40.82 -0.32 9.43 16 33 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -30.34 312.77 -8.20 -38.54 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -3.20 Total: 9.91 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -3.65 Total: 1.03 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.38 Total: -51.18 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.08 Total: -16.02 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.34 -8.20 -38.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291988612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.611 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds